Debian GIS Project
Summary
Remote Sensing
Ekstern registrering og jordobservation

Debianpakker som håndterer Remote Sensing (for eksempel Synthetic Aperture Radar - SAR), behandling (interferometri, polarimetri, datavisualisering etc.) og jordobservation.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian GIS to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian GIS mailing list

Links to other tasks

Debian GIS Remote Sensing packages

Official Debian packages with high relevance

dans-gdal-scripts
GDAL-bidragede værktøjer af Geographic Information Network of Alaska
Versions of package dans-gdal-scripts
ReleaseVersionArchitectures
buster0.24-3amd64,arm64,armhf,i386
jessie0.23-2amd64,armel,armhf,i386
stretch0.24-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
Debtags of package dans-gdal-scripts:
roleprogram
Popcon: 2 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

Dan Stahlkes GDAL-bidragede værktøjer er en samling af nyttige programmer til at udføre gængse rasteroperationer. De inkluderede værktøjer er: gdal_contrast_stretch, gdal_dem2rgb, gdal_get_projected_bounds, gdal_landsat_pansharpi, gdal_list_corners, gdal_merge_simple, gdal_merge_vrt gdal_raw2geotiff, gdal_trace_outline, gdal_wkt_to_mask, gdal_make_ndv_mask.

gdal-bin
Geospatial dataabstraktionsbibliotek - redskabsprogrammer
Versions of package gdal-bin
ReleaseVersionArchitectures
bullseye3.2.2+dfsg-2+deb11u2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
stretch2.1.2+dfsg-5amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
stretch-security2.1.2+dfsg-5+deb9u1amd64,arm64,armel,armhf,i386
jessie-security1.10.1+dfsg-8+deb8u2amd64,armel,armhf,i386
buster2.4.0+dfsg-1amd64,arm64,armhf,i386
buster-security2.4.0+dfsg-1+deb10u1amd64,arm64,armhf,i386
sid3.8.5+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bookworm3.6.2+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye-security3.2.2+dfsg-2+deb11u2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie3.8.4+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
jessie1.10.1+dfsg-8amd64,armel,armhf,i386
Debtags of package gdal-bin:
fieldgeography
interfacecommandline
roleprogram
scopeutility
usechecking, converting
works-withimage, image:raster, image:vector
Popcon: 621 users (272 upd.)*
Versions and Archs
License: DFSG free
Git

GDAL er et oversætterbibliotek for geospatiale raster-dataformater. Som et bibliotek præsenterer den en enkelt abstrakt datamodel til det kaldende program for alle understøttede formater. Det forbundne OGR-bibliotek (som lever indeni GDAL-kildetræet) tilbyder en lignende kapabilitet for enkle funktioner af vektordata.

GDAL understøtter +40 populære dataformater, inklusive almindeligt brugte (GeoTIFF, JPEG, PNG og flere) samt dem brugt i GIS og softwarepakker til fjernregistrering (ERDAS Imagine, ESRI arc/Info, ENVI, PCI Geomatics). Understøtter også mange formater til fjernregistrering og videnskabelig datadistribution såsom HDF, EOS FAST, NOAA L1B, NetCDF, FITS.

OGR-biblioteket understøtter populære vektorformater som ESRI Shapefile, TIGER-data, S57, MapInfo-fil, DGN, GML med flere.

Denne pakke indeholder redskabsprogrammer, baseret på GDAL/OGR-biblioteket: gdal_translate, gdalinfo, gdaladdo, gdalwarp, ogr2ogr, ogrinfo, ogrtindex.

The package is enhanced by the following packages: pktools
libepr-api-dev
ENVISAT Product Reader API for C - udviklingsfiler
Versions of package libepr-api-dev
ReleaseVersionArchitectures
bookworm2.3~dev20150708-12amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid2.3~dev20150708-13amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
trixie2.3~dev20150708-13amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
bullseye2.3~dev20150708-10amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
buster2.3~dev20150708-8amd64,arm64,armhf,i386
stretch2.3~dev20150708-2amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
Popcon: 4 users (3 upd.)*
Versions and Archs
License: DFSG free
Git

ENVISAT Product Reader API er et sæt af C-kildekodefiler, der understøtter udviklere som ønsker at bruge MERIS-, AATSR- og ASAR-dataprodukter for ESA ENVISAT-satellitten i deres programmer.

Hovedbrugen for C API'en er indsættelsen af ENVISAT-data i

  • nye videnskabelige algoritmer udviklet for MERIS-, AATSR- og ASAR- sensorer eller endda dem alle
  • eksisterende videnskabelige programpakker skrevet i C eller C++ eller COTS-programsystemer der tillader udvidelse via en C- eller C++- grænseflade

Denne pakke indeholder udviklingsfiler (teksthoveder og statiske biblioteker).

libgdal-dev
Geospatial dataabstraktionsbibliotek - udviklingsfiler
Versions of package libgdal-dev
ReleaseVersionArchitectures
bullseye-security3.2.2+dfsg-2+deb11u2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
stretch-security2.1.2+dfsg-5+deb9u1amd64,arm64,armel,armhf,i386
buster-security2.4.0+dfsg-1+deb10u1amd64,arm64,armhf,i386
jessie1.10.1+dfsg-8amd64,armel,armhf,i386
trixie3.8.4+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
sid3.8.5+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bookworm3.6.2+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye3.2.2+dfsg-2+deb11u2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
jessie-security1.10.1+dfsg-8+deb8u2amd64,armel,armhf,i386
buster2.4.0+dfsg-1amd64,arm64,armhf,i386
stretch2.1.2+dfsg-5amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
Debtags of package libgdal-dev:
devellang:c, lang:c++, library
roledevel-lib
Popcon: 167 users (89 upd.)*
Versions and Archs
License: DFSG free
Git

GDAL er et oversætterbibliotek for geospatiale raster-dataformater. Som et bibliotek præsenterer den en enkelt abstrakt datamodel til det kaldende program for alle understøttede formater. Det forbundne OGR-bibliotek (som lever indeni GDAL-kildetræet) tilbyder en lignende kapabilitet for enkle funktioner af vektordata.

GDAL understøtter mange populære dataformater, inklusiv almindelig brugte (GeoTIFF, JPEG, PNG med flere) samt dem brugt i GIS og ekstern følsomhedsprogrampakker (ERDAS Imagine, ESRI Arc/Info, ENVI, PCI Geomatics). Understøtter også mange eksterne følsomheds- og videnskabelige datadistributionsformater såsom HDF, EOS FAST, NOAA L1B, NetCDF, FITS.

OGR-biblioteket understøtter populære vektorformater som ESRI Shapefile, TIGER-data, S57, MapInfo-fil, DGN, GML med flere.

Denne pakke indeholder filerne krævet for at udvikle et program som vil bruge GDAL/OGR'en (hoveder, statiske objekter, konfigurationsskript).

libossim-dev
OSSIM-bibliotek - udviklingsfiler
Versions of package libossim-dev
ReleaseVersionArchitectures
buster2.6.2-1amd64,arm64,armhf,i386
stretch1.8.20.3+ds-5amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
bullseye2.9.1-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
jessie1.8.16-3amd64,armel,armhf,i386
Debtags of package libossim-dev:
devellibrary
roledevel-lib
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Open Source Software Image Map (OSSIM) er en højtydende motor for ekstern registrering, billedbehandling, geografisk informationssystem og fotogrammetri. Det har været under udvikling siden 1996.

Designet som en serie af højtydende programbiblioteker, er det skrevet i C++ med de seneste teknikker i objektorienteret programdesign.

Dette bibliotek tilbyder avanceret funktionalitet for ekstern registrering, billedbehandling og geografisk rumlighed. Et hurtigt overblik over OSSIM-funktionalitet inkluderer ortho-berigtigelse, præcis terrænkorrektion, omhyggelige sensormodeller, meget store mosaikker og krydssensorfusioner, en bred vifte af kortprojektioner og datums, og et stort udvalg af kommercielle og offentlige dataformater. Arkitekturen i bibliotekets understøtter parallel behandling med MPI (ikke aktiveret), en dynamisk arkitektur for udvidelsesmoduler og dynamisk tilsluttede objekter tillader hurtige prototyper af brugerdefinerede kæder til billedbehandling.

Denne pakke indeholder udviklingsfilerne til at bygge programmer, der bruger biblioteket OSSIM.

libotb-dev
Frit bibliotek til billedbehandlingsalgoritmer - udvikling
Versions of package libotb-dev
ReleaseVersionArchitectures
buster6.6.1+dfsg-1amd64,i386
stretch5.8.0+dfsg-3amd64,i386
bullseye7.2.0+dfsg-1amd64,i386
bookworm8.1.1+dfsg-1amd64,i386
Popcon: 0 users (2 upd.)*
Versions and Archs
License: DFSG free
Git

ORFEO Toolbox (OTB) er distribueret som et bibliotek i åben kildekode for billedbehandlingsalgoritmer. OTB er baseret på det medicinske billedbehandlingsbibliotek ITK og tilbyder bestemte funktioner for ekstern billedbehandling generelt og specielt for billeder i høj delvis opløsning.

Denne pakke indeholder udviklingsfilerne krævet for at bygge dine egne OTB-programmer og moduler.

monteverdi
ORFEO-værktøjskasse - grafisk brugerflade for billedbehandling
Versions of package monteverdi
ReleaseVersionArchitectures
buster6.6.1+dfsg-1amd64,i386
stretch5.8.0+dfsg-3amd64,i386
bullseye7.2.0+dfsg-1amd64,i386
bookworm8.1.1+dfsg-1amd64,i386
Popcon: 3 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

ORFEO Toolbox (OTB) er distribueret som et bibliotek i åben kildekode for billedbehandlingsalgoritmer. OTB er baseret på det medicinske billedbehandlingsbibliotek ITK og tilbyder bestemte funktioner for ekstern billedbehandling generelt og specielt for billeder i høj delvis opløsning.

Denne pakke indeholder de grafiske programmer monteverdi og mapla.

ossim-core
OSSIM - grundlæggende redskaber
Versions of package ossim-core
ReleaseVersionArchitectures
jessie1.8.16-3amd64,armel,armhf,i386
bullseye2.9.1-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
buster2.6.2-1amd64,arm64,armhf,i386
stretch1.8.20.3+ds-5amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
Popcon: 4 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Open Source Software Image Map (OSSIM) er en højtydende motor for ekstern registrering, billedbehandling, geografisk informationssystem og fotogrammetri. Det har været under udvikling siden 1996.

Designet som en serie af højtydende programbiblioteker, er det skrevet i C++ med de seneste teknikker i objektorienteret programdesign.

Dette bibliotek tilbyder avanceret funktionalitet for ekstern registrering, billedbehandling og geografisk rumlighed. Et hurtigt overblik over OSSIM-funktionalitet inkluderer ortho-berigtigelse, præcis terrænkorrektion, omhyggelige sensormodeller, meget store mosaikker og krydssensorfusioner, en bred vifte af kortprojektioner og datums, og et stort udvalg af kommercielle og offentlige dataformater. Arkitekturen i bibliotekets understøtter parallel behandling med MPI (ikke aktiveret), en dynamisk arkitektur for udvidelsesmoduler og dynamisk tilsluttede objekter tillader hurtige prototyper af brugerdefinerede kæder til billedbehandling.

Denne pakke inkluderer nogle grundlæggende værktøjer, som bruger OSSIM-biblioteket til at udføre nogle grundlæggende opgaver.

otb-bin
ORFEO Toolbox - programmer for kommandolinjen
Versions of package otb-bin
ReleaseVersionArchitectures
bookworm8.1.1+dfsg-1amd64,i386
stretch5.8.0+dfsg-3amd64,i386
buster6.6.1+dfsg-1amd64,i386
bullseye7.2.0+dfsg-1amd64,i386
Popcon: 4 users (3 upd.)*
Versions and Archs
License: DFSG free
Git

ORFEO Toolbox (OTB) er distribueret som et bibliotek i åben kildekode for billedbehandlingsalgoritmer. OTB er baseret på det medicinske billedbehandlingsbibliotek ITK og tilbyder bestemte funktioner for ekstern billedbehandling generelt og specielt for billeder i høj delvis opløsning.

Denne pakke indeholder programopstart for kommandolinjen, som kan afvikle ethvert OTB-program tilbudt af pakken libotb-apps.

otb-bin-qt
ORFEO Toolbox - grafiske brugerfladeprogrammer
Versions of package otb-bin-qt
ReleaseVersionArchitectures
bullseye7.2.0+dfsg-1amd64,i386
stretch5.8.0+dfsg-3amd64,i386
bookworm8.1.1+dfsg-1amd64,i386
buster6.6.1+dfsg-1amd64,i386
Popcon: 7 users (2 upd.)*
Versions and Archs
License: DFSG free
Git

ORFEO Toolbox (OTB) er distribueret som et bibliotek i åben kildekode for billedbehandlingsalgoritmer. OTB er baseret på det medicinske billedbehandlingsbibliotek ITK og tilbyder bestemte funktioner for ekstern billedbehandling generelt og specielt for billeder i høj delvis opløsning.

Denne pakke indeholder opstartsprogrammet for den grafiske brugerflade, som kan afvikle ethvert OTB-program leveret af pakken liboth-apps.

python-epr
Python ENVISAT Product Reader API - Python 2
Versions of package python-epr
ReleaseVersionArchitectures
jessie0.8.1-2amd64,armel,armhf,i386
buster0.9.5-2amd64,arm64,armhf,i386
stretch0.9.3-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
Debtags of package python-epr:
devellang:python, library
roledevel-lib
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

PyEPR tilbyder Pythonbindinger for ENVISAT Product Reader C API (EPR API) for læsning af satellitdata fra ENVISAT ESA-mission (European Space Agency).

PyEPR, samt EPR API'en for C, understøtter supports ENVISAT MERIS-, AATSR Level 1B- og Level 2- og også ASAR dataprodukter. API'en tilbyder adgang til data enten på en geofysisk (afkodede, klar til brug billedpunktsprøver) eller på et råt datalag. Den rå dataadgang gør det muligt at læse ethvert datafelt indeholdt i en produktfil.

Dette er Python 2-versionen af pakken.

python-gdal
??? missing short description for package python-gdal :-(
Maintainer: Debian GIS Project
Versions of package python-gdal
ReleaseVersionArchitectures
stretch-security2.1.2+dfsg-5+deb9u1amd64,arm64,armel,armhf,i386
buster-security2.4.0+dfsg-1+deb10u1amd64,arm64,armhf,i386
jessie1.10.1+dfsg-8amd64,armel,armhf,i386
buster2.4.0+dfsg-1amd64,arm64,armhf,i386
jessie-security1.10.1+dfsg-8+deb8u2amd64,armel,armhf,i386
stretch2.1.2+dfsg-5amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
Debtags of package python-gdal:
devellang:python, library
fieldgeography
roledevel-lib
Popcon: 54 users (2 upd.)*
Versions and Archs
License: DFSG free
Git
python-mipp
Meteorological data Ingest-Processing Package (mipp)
Versions of package python-mipp
ReleaseVersionArchitectures
jessie0.9.1-2all
buster1.1.0-1all
stretch1.0.0-1all
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Pakkens hovedformål er at konvertere satellitdata på lavt niveau til et format forstået af mpop (http://github.com/mraspaud/mpop). Det primære formål er at understøtte geostationære satellitdata (niveau 1.5) men der er også understøttelse for lænsing af nogle polarkredsende SAR-data.

En mere sofistikeret grænseflade til satellitdataobjekter er understøttet af mpop.

I øjeblikket håndteres data fra alle nuværende Meteosat Second Generation-satellitter (MSG), Meteosat 7, GOES 11-15, MTSAT's og GOMS alle hentet via EUMETCast.

Derudover håndterer mipp Synthetic Apperture Radar-data (SAR) fra Terrscan-X, Cosmo-Sky Med og Radarsat 2.

Denne pakke er en del af PyTroll-værktøjssættet.

python-mpop
Meteorologisk efterbehandlingspakke (MPop)
Versions of package python-mpop
ReleaseVersionArchitectures
buster1.5.0-4all
jessie1.0.0-1all
stretch1.3.1-1all
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Pakken Meteorological Post-Processing er et Pythonbibliotek for oprettelse af RGB-produkter for meteorologisk ekstern registrering. Som sådan kan pakken oprette RGB-kompositter direkte fra satellitinstrumentkanaler eller udnytte præberegnede PGE'er.

Den er designet for nem udvidelse, der kan understøtte meteorologisk satellit ved oprettelse af udvidelsesmoduler. I grunddistributionen er der understøttelse for Meteosat 7, 8, 9, MTSAT1R, MTSAT2, GOES 11, GOES 12, GOES 13 via brug af mipp og Noaa 15, 16, 17, 18, 19, og Metop A via brug af aapp og ahamap.

Genprojicering af data er også tilgængelig via brugen af pakken pyresample.

Denne pakke er en del af PyTroll-værktøjssættet.

python-otb
ORFEO Toolbox Python API for programmer - Python 2
Versions of package python-otb
ReleaseVersionArchitectures
buster6.6.1+dfsg-1amd64,i386
stretch5.8.0+dfsg-3amd64,i386
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

ORFEO Toolbox (OTB) er distribueret som et bibliotek i åben kildekode for billedbehandlingsalgoritmer. OTB er baseret på det medicinske billedbehandlingsbibliotek ITK og tilbyder bestemte funktioner for ekstern billedbehandling generelt og specielt for billeder i høj delvis opløsning.

Denne pakke indeholder Python 2-API'en, som kan bruges til at oprette Pythonversioner af eksisterende OTB-programmer tilbudt af pakken libotb-apps.

python-pycoast
Tegn kystlinjer, grænser og floder på billeder
Versions of package python-pycoast
ReleaseVersionArchitectures
stretch0.5.4+dfsg-1all
buster1.2.2+dfsg-1all
jessie0.5.2-1all
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Pycoast er en Pythonpakke til at tilføje kystlinjer, grænser og floder til rasterbilleder via data fra GSHHS- (tidligere kendt som GSHHS) WDBII-datasæt.

Denne pakke er en del af PyTroll-værktøjssættet.

Denne pakke indeholder pycoast for Python 2.

python-pykdtree
Hurtig kd-tree-implementering med OpenMP-aktiverede forespørgsler - Python 2-version
Versions of package python-pykdtree
ReleaseVersionArchitectures
buster1.3.1-2amd64,arm64,armhf,i386
stretch1.2.1-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
jessie0.2-1amd64,armel,armhf,i386
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Pykdtree er en kd-tree-implementering for hurtige nærmeste nabosøgninger i Python. Formålet er at være den hurtigste implementering for gængs brug (små dimensioner og et lille antal naboer) for både trækonstruktion og forespørgsler.

Implementeringen er baseret på scipy.spatial.cKDTree og libANN ved at kombinere de bedste funktioner fra begge og fokusere på implementeringseffektivitet.

Grænsefladen svarer til scipy.spatial.cKDTree med undtagelse af, at kun euklidiske afstandsmåling er understøttet.

Forespørgsler kan valgfrit benytte flere tråde via brug af OpenMP.

Dette er Python 2-versionen af pakken.

python-pyorbital
Orbitale beregninger og astronomiberegninger i Python 2
Versions of package python-pyorbital
ReleaseVersionArchitectures
jessie0.3.2-1all
buster1.5.0-2all
stretch1.1.1-1all
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Pythonpakke for beregning af orbitale parametre fra TLE-filer og udarbejdelse af diverse astronomiske beregninger.

Denne pakke er en del af PyTroll-værktøjssættet.

Dette er Python 2-versionen af pakken.

python-pyresample
Nysampling af eksterne sensing-data i Python 2
Versions of package python-pyresample
ReleaseVersionArchitectures
buster1.10.3-1amd64,arm64,armhf,i386
jessie1.1.0-1all
stretch1.2.9-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Pyresample er en Pythonpakke for nysampling (reprojektion) for jordobserverende satellitdata. Pakken håndterer både nysampling af gitteropdelte data (f.eks. geostationære satellitter) og swath-data (satellitter i kredsløb om polen).

Pyresample kan bruger flere processorkerner for nysampling. Pyresample understøtter maskerede tabeller.

Dette er Python 2-versionen af pakken.

snap
Placering af gener fra DNA-sekvens med skjult Markovmodel
Versions of package snap
ReleaseVersionArchitectures
bullseye2013-11-29-11amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bookworm2013-11-29-11amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie2013-11-29-11amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
jessie2013-11-29-1amd64,armel,armhf,i386
sid2013-11-29-11amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
stretch2013-11-29-6amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
buster2013-11-29-9amd64,arm64,armhf,i386
Popcon: 1289 users (98 upd.)*
Versions and Archs
License: DFSG free
Git

SNAP er et alment program til at finde gener. Programmet er egnet for både eukaryote og prokaryote arvemasser. SNAP er et akronym for Semi-HMM-baseret Nucleic Acid Parser.

Please cite: Ian Korf: Gene finding in novel Genomes. (PubMed,eprint) BMC Bioinformatics 5:59 (2004)
Registry entries: Bio.tools 
Screenshots of package snap
Remark of Debian GIS team: includes/uses the JAI package that is non-free

Official Debian packages with lower relevance

nco
Kommandolinjeoperatører til at analysere netCDF-filer
Versions of package nco
ReleaseVersionArchitectures
jessie4.4.2-1amd64,armel,armhf,i386
stretch4.6.3-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
stretch-backports4.7.9-1~bpo9+1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
buster4.7.9-1amd64,arm64,armhf,i386
sid5.2.4-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
trixie5.2.3-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
bookworm5.1.4-1+deb12u1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye4.9.7-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Debtags of package nco:
fieldmeteorology
interfacecommandline
roleprogram
scopeutility
Popcon: 29 users (12 upd.)*
Versions and Archs
License: DFSG free
Git

NCO er et programpakke kendt som operatører. Operatørerne er uafhængige, kommandolinjeprogrammer der kan køres i en POSIX-skal. Operatører tager en eller flere netCDF-filer som inddata, udføre handlinger (f.eks. gennemsnit, hyperslabbing), og laver en netCDF-uddatafil. NCO blev oprindelig udviklet til at manipulere og analysere klimadata. Programmet virker dog på alle datasæt i netCDF-formatet.

Please cite: Charles S. Zender: Analysis of Self-describing Gridded Geoscience Data with netCDF Operators (NCO). (eprint) Environmental Modelling & Software 23(10):1338-1342 (2008)
ncview
Visuel browser til X11 for NetCDF-formatfiler
Versions of package ncview
ReleaseVersionArchitectures
bookworm2.1.8+ds-5amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
jessie1.93g-1amd64,armel,armhf,i386
trixie2.1.8+ds-5amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
buster2.1.8+ds-3amd64,arm64,armhf,i386
stretch2.1.7+ds-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
bullseye2.1.8+ds-4amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid2.1.8+ds-5amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
Debtags of package ncview:
fieldmeteorology
interfacex11
roleprogram
uitoolkitathena
useviewing
x11application
Popcon: 37 users (10 upd.)*
Versions and Archs
License: DFSG free
Git

Du kan bruge ncview til at få et hurtigt og nemt, trykknapsudseende af dine NetCDF-filer. Du kan vise simple film over dataene, se langs med forskellige dimensioner, tage et kig på de aktuelle dataværdier, ændre farvekort, vende dataene om og andre simple visuelle handlinger.

Screenshots of package ncview
netcdf-bin
Programmer for læsning og skrivning af NetCDF-filer
Versions of package netcdf-bin
ReleaseVersionArchitectures
stretch4.4.1.1-2amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
sid4.9.2-5amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
trixie4.9.2-4amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
bookworm4.9.0-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye4.7.4-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
buster4.6.2-1amd64,arm64,armhf,i386
jessie4.1.3-7.2amd64,armel,armhf,i386
Debtags of package netcdf-bin:
interfacecommandline
roleprogram
scopeutility
Popcon: 95 users (59 upd.)*
Versions and Archs
License: DFSG free
Git

Indeholder programmerne ncdump og ncgen, som konverterer NetCDF-filer til ASCII og tilbage igen. NetCDF (network Common Data Form) er en brugerflade for videnskabelig dataadgang og et frit distribueret programbibliotek, som tilbyder en implementering af brugerfladen. Biblioteket netCDF definerer også et maskinuafhængigt format til repræsentation af videnskabelige data. Tilsammen understøtter brugerfladen, biblioteket og formatet oprettelsen, adgangen og delingen af videnskabelige data.

Debian packages in contrib or non-free

doris
Delft object-oriented radar interferometric software
Versions of package doris
ReleaseVersionArchitectures
stretch4.06~beta2+dfsg-3 (contrib)amd64,i386
jessie4.06~beta2+dfsg-3 (contrib)amd64,i386
sid5.0.3~beta+dfsg-17 (contrib)amd64
trixie5.0.3~beta+dfsg-17 (contrib)amd64
bookworm5.0.3~beta+dfsg-16 (contrib)amd64,i386
bullseye5.0.3~beta+dfsg-14 (contrib)amd64,i386
buster5.0.3~beta+dfsg-7 (contrib)amd64,i386
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free, but needs non-free components
Git

DORIS is an Interferometric Synthetic Aperture Radar (InSAR) processor developed by the Delft Institute of Earth Observation and Space Systems of Delft University of Technology.

Interferometric products and endproducts such as Digital Elevation Models and displacement maps can be generated with this software from Single Look Complex data. Data from the satellites ERS, ENVISAT (first ENVISAT interferogram, DEM, and perspective view, JERS (first JERS interferogram), and RADARSAT (first RADARSAT interferogram) can be processed with the Doris software.

googleearth-package
utility to automatically build a Debian package of Google Earth
Maintainer: Adnan Hodzic
Versions of package googleearth-package
ReleaseVersionArchitectures
jessie1.2.2 (contrib)all
stretch1.2.2 (contrib)all
Debtags of package googleearth-package:
develpackaging
fieldgeography
interfacecommandline
roleprogram
scopeutility
usedownloading
Popcon: 11 users (0 upd.)*
Versions and Archs
License: DFSG free, but needs non-free components
Git

Google Earth is a 3D planet viewer that lets you interactively navigate satellite imagery, maps, terrain, and so forth.

Google Earth is available for GNU/Linux from their web site, but is non-free software and is undistributable. It also does not integrate well into a Debian system.

This utility makes it possible to build your own personal Debian package of Google Earth. The packaging itself is Free Software, but the Google Earth program is governed by the copyright holder (Google), so you may be limited as to what you can do with the resulting package (i.e. no redistribution, etc). This package will simply help you create the package, it is your responsibility to use the resulting package responsibly.

snaphu
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
Versions of package snaphu
ReleaseVersionArchitectures
stretch1.4.2-2 (non-free)amd64
sid2.0.7-1 (non-free)amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bullseye2.0.4-1 (non-free)amd64
buster1.4.2-7 (non-free)amd64
trixie2.0.7-1 (non-free)amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
bookworm2.0.5-1 (non-free)amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
jessie1.4.2-2 (non-free)amd64
Debtags of package snaphu:
roleprogram
Popcon: 4 users (0 upd.)*
Versions and Archs
License: non-free
Git

Two-dimensional phase unwrapping is the process of recovering unambiguous phase data from a 2-D array of phase values known only modulo 2pi rad.

There are many applications, like Magnetic Resonance Imaging (MRI), Synthetic Aperture Radar (SAR), fringe pattern analysis, tomography and spectroscopy, which as part of their fundamental operation depend upon the extraction of a phase signal from their input image. Usually the phase is available in a form that suffers from 2-pi phase jumps due to the use of the mathematical arctangent function, which produces an inherently wrapped output. This wrapped phase is unusable until the phase discontinuities are removed.

SNAPHU is an implementation of the Statistical-cost, Network-flow Algorithm for Phase Unwrapping particularly suitable for SAR interferometry applications. This algorithm poses phase unwrapping as a maximum a posteriori probability (MAP) estimation problem, the objective of which is to compute the most likely unwrapped solution given the observable input data. Because the statistics relating the input data to the solution depend on the measured quantity, SNAPHU incorporates three built-in statistical models, for topography data, deformation data, and smooth generic data. The posed optimization problem is solved approximately with use of network-flow techniques.

As SNAPHU uses an iterative optimization procedure, its execution time depends on the difficulty of the interferogram. In single-tile mode the required memory is on the order of 100 MB per 1000000 pixels in the input interferogram.

Packaging has started and developers might try the packaging code in VCS

gsdview
Geo-Spatial Data Viewer open source edition
Versions of package gsdview
ReleaseVersionArchitectures
VCS0.6.5-1all
Versions and Archs
License: GPL-2
Debian package not available
Git
Version: 0.6.5-1

GSDView open source edition is a lightweight viewer for geo-spatial data and products written in Python and Qt4. GSDView is modular and has a simple plug-in architecture. It is mainly intended to be a graphical front-end for the GDAL library and tools.

mapready
ASF Remote Sensing Tool Kit
Versions of package mapready
ReleaseVersionArchitectures
VCS2.3.17-1all
Versions and Archs
License: non-free
Debian package not available
Git
Language: C
Version: 2.3.17-1

The MapReady Remote Sensing Tool Kit accepts level 1 detected SAR data, single look complex SAR data, and optical data from ASF and some other facilities. It can terrain correct, geocode, apply polarimetric decompositions to multi-pol SAR data, and save to several common imagery formats including GeoTIFF. Other software included in the package are an image viewer, metadata viewer, a projection coordinate converter, and a variety of command line tools.

ossim-gui
OSSIM graphical interface
Versions of package ossim-gui
ReleaseVersionArchitectures
VCS1.8.20.3+ds-1all
Versions and Archs
License: free
Debian package not available
Git
Version: 1.8.20.3+ds-1

Open Source Software Image Map (OSSIM) is a high performance engine for remote sensing, image processing, geographical information systems and photogrammetry. It has been actively developed since 1996.

Designed as a series of high performance software libraries, it is written in C++ employing the latest techniques in object-oriented software design.

The library provides advanced remote sensing, image processing, and geo-spatial functionality. A quick summary of OSSIM functionality includes ortho-rectification, precision terrain correction, rigorous sensor models, very large mosaics, and cross sensor fusions, a wide range of map projections and datums, and a large range of commercial and government data formats. The architecture of the library supports parallel processing with mpi (not enabled), a dynamic plugin architecture, and dynamically connectable objects allowing rapid prototyping of custom image processing chains.

This package contains the OSSIM graphical interface.

ossim-package-support
OSSIM package-support utilities
Versions of package ossim-package-support
ReleaseVersionArchitectures
VCS1.8.20.3+ds0-1all
Versions and Archs
License: free
Debian package not available
Git
Version: 1.8.20.3+ds0-1

Open Source Software Image Map (OSSIM) is a high performance engine for remote sensing, image processing, geographical information systems and photogrammetry. It has been actively developed since 1996.

Designed as a series of high performance software libraries, it is written in C++ employing the latest techniques in object-oriented software design.

The library provides advanced remote sensing, image processing, and geo-spatial functionality. A quick summary of OSSIM functionality includes ortho-rectification, precision terrain correction, rigorous sensor models, very large mosaics, and cross sensor fusions, a wide range of map projections and datums, and a large range of commercial and government data formats. The architecture of the library supports parallel processing with mpi (not enabled), a dynamic plugin architecture, and dynamically connectable objects allowing rapid prototyping of custom image processing chains.

This package contains the OSSIM data shared between packages.

ossim-planet
OSSIM planet utilities
Versions of package ossim-planet
ReleaseVersionArchitectures
VCS1.8.20.3+ds-1all
Versions and Archs
License: free
Debian package not available
Git
Version: 1.8.20.3+ds-1

Open Source Software Image Map (OSSIM) is a high performance engine for remote sensing, image processing, geographical information systems and photogrammetry. It has been actively developed since 1996.

Designed as a series of high performance software libraries, it is written in C++ employing the latest techniques in object-oriented software design.

The library provides advanced remote sensing, image processing, and geo-spatial functionality. A quick summary of OSSIM functionality includes ortho-rectification, precision terrain correction, rigorous sensor models, very large mosaics, and cross sensor fusions, a wide range of map projections and datums, and a large range of commercial and government data formats. The architecture of the library supports parallel processing with mpi (not enabled), a dynamic plugin architecture, and dynamically connectable objects allowing rapid prototyping of custom image processing chains.

This package contains the OSSIM planet utilities.

ossim-planet-qt
OSSIM planet Qt utility
Versions of package ossim-planet-qt
ReleaseVersionArchitectures
VCS1.8.20.3+ds-1all
Versions and Archs
License: free
Debian package not available
Git
Version: 1.8.20.3+ds-1

Open Source Software Image Map (OSSIM) is a high performance engine for remote sensing, image processing, geographical information systems and photogrammetry. It has been actively developed since 1996.

Designed as a series of high performance software libraries, it is written in C++ employing the latest techniques in object-oriented software design.

The library provides advanced remote sensing, image processing, and geo-spatial functionality. A quick summary of OSSIM functionality includes ortho-rectification, precision terrain correction, rigorous sensor models, very large mosaics, and cross sensor fusions, a wide range of map projections and datums, and a large range of commercial and government data formats. The architecture of the library supports parallel processing with mpi (not enabled), a dynamic plugin architecture, and dynamically connectable objects allowing rapid prototyping of custom image processing chains.

This package contains the OSSIM planet Qt utility.

ossim-plugins
OSSIM core plugins
Versions of package ossim-plugins
ReleaseVersionArchitectures
VCS1.8.20.3+ds-1all
Versions and Archs
License: free
Debian package not available
Git
Version: 1.8.20.3+ds-1

Open Source Software Image Map (OSSIM) is a high performance engine for remote sensing, image processing, geographical information systems and photogrammetry. It has been actively developed since 1996.

Designed as a series of high performance software libraries, it is written in C++ employing the latest techniques in object-oriented software design.

The library provides advanced remote sensing, image processing, and geo-spatial functionality. A quick summary of OSSIM functionality includes ortho-rectification, precision terrain correction, rigorous sensor models, very large mosaics, and cross sensor fusions, a wide range of map projections and datums, and a large range of commercial and government data formats. The architecture of the library supports parallel processing with mpi (not enabled), a dynamic plugin architecture, and dynamically connectable objects allowing rapid prototyping of custom image processing chains.

This package contains the OSSIM core plugins.

polsarpro
Polarimetric SAR Data Processing and Educational Tool
Versions of package polsarpro
ReleaseVersionArchitectures
VCS4.2.0+dfsg-1all
Versions and Archs
License: GPL-2.0
Debian package not available
Git
Language: C, Tcl/Tk
Version: 4.2.0+dfsg-1

The Polarimetric SAR Data Processing and Educational Tool aims to facilitate the accessibility and exploitation of multi-polarised SAR datasets including those from ESA Third Party Missions (ALOS PALSAR), Envisat ASAR Alternating Polarisation mode products, RADARSAT-2 and TerraSAR-X.

A wide-ranging tutorial and comprehensive documentation provide a grounding in polarimetry and polarimetric interferometry necessary to stimulate research and development of scientific applications that utilise such techniques; the toolbox of processing functions offers users the capability to implement them.

PolSARpro is developed under contract to ESA by a consortium comprising IETR at the University of Rennes 1, The Microwaves and Radar Institute (HR) of DLR and AEL Consultants, together with Dr Mark Williams. The initiative is a direct result of recommendations made at the POLInSAR Workshops held at ESRIN in January 2003, 2005 and 2007.

Unofficial packages built by somebody else

adore-doris
Automated DORIS Environment
Responsible: Antonio Valentino
License: GPL-2
Language: bash, python

Automated DORIS Environment (adore) is a set of bash scripts to ease use of TU-DELFT's DORIS software. ADORE stands for Automated DORIS Environment. It is development started at the University of Miami Geodesy Group, to help researchers generate interferograms with ease. Just like DORIS it is an open source project and it comes with the same license. ADORE tries to provide a streamlined user interface for generating interferograms with DORIS and has some additional features for displaying and exporting the results, and time series analysis.

eolisa
Client for ESA Earth Observation Catalogue and Ordering Services
License: to be clarified
Language: Java

EOLi (Earth Observation Link) is the European Space Agency's client for Earth Observation Catalogue and Ordering Services. Using EOLi, you can browse the metadata and preview images of Earth Observation data acquired by the satellites ENVISAT, ERS, Landsat, IKONOS, DMC, ALOS, SPOT, Kompsat, Proba, JERS, IRS, Nimbus, NOAA, SCISAT, SeaStar, Terra/Aqua.

Scientific Users with a registered account can order or download products of various processing levels.

getorb
Precise orbits interpolation utility
Responsible: Antonio Valentino
License: to be clarified
Language: Fortran

The software consists of a program, lodr, to list the content of the Orbital Data Records (ODRs), a subroutine library, getorb.a, that can be ported to some other program to interpolate the orbits and any given moment, and an example program getorb to demonstrate the use of the getorb.a library.

imcorr
Program to do cross-correlation for motion tracking
License: GPL-2+
Language: C

IMCORR takes two images and a series of input parameters and attempts to match small subscenes (called 'chips') from the two images. The program uses a fast fourier transform based version of a normalized cross-covariance method.

The most common use of this type of algorithm in image processing is to accurately locate tie-point pairs in two images to coregister them. However, if the images are already coregistered by other means, the algorithm may be used to find the displacements of moving features, provided that the features show little change in their appearance, and that the motion is strictly translational.

The correlation, peak finding, and error estimation routines in IMCORR are derived from FORTRAN subroutines from the Land Analysis System software (LAS) written at NASA Goddard Space Flight Center and USGS Eros Data Center.

IMCORR consists of a C code wrapper which makes the use of the routines more straightforward and automated for velocity-mapping applications.

opticks
Opticks is an open source remote sensing application and development framework
License: LGPL-2
Language: C, C++

Opticks is an expandable remote sensing and imagery analysis software platform that is free and open source. Unlike other competing tools, you can add capability to Opticks by creating an extension. Opticks provides the most advanced extension capability of any other remote sensing tool on the market.

Features:

  • Supports the following file formats: NITF 2.0/2.1, GeoTIFF, ENVI, ASPAM/PAR, CGM, DTED, Generic RAW, ESRI Shapefile, HDF5, AVI, MPEG, JPEG, GIF, PNG, BMP
  • Zoom, pan, rotate spatially large datasets
  • Quickly layer GIS features, annotations, results, and other information over your data to provide context
  • Many image display controls such as colormap, histogram, transparency, etc
  • Support for datasets larger than four gigabytes
  • Analysts can quickly combine steps using graphical wizards
  • Support for processing data in it's native interleave of BIP, BSQ or BIL
  • Get extensions to drop in new capability
points2grid
Generates Digital Elevation Models using a local gridding method
License: BSD
Language: C++

Points2Grid generates Digital Elevation Models (DEM) using a local gridding method. The local gridding algorithm computes grid cell elevation using a circular neighbourhood defined around each grid cell based on a radius provided by the user. This neighbourhood is referred to as a bin, while the grid cell is referred to as a DEM node.

Up to four values - minimum, maximum, mean, or inverse distance weighted (IDW) mean - are computed for points that fall within the bin. These values are then assigned to the corresponding DEM node and used to represent the elevation variation over the neighbourhood represented by the bin. If no points are found within a given bin, the DEM node receives a value of null.

The Points2Grid service also provides a null filing option, which applies an inverse distance weighted focal mean via a square moving window of 3, 5, or 7 pixels to fill cells in the DEM that have null values.

No known packages available

giant
Generic InSAR Analysis Toolbox
License: non-free (free for non-commercial applications)
Debian package not available
Language: Python

GIAnT is a suite of Python libraries and scripts that implement various published time-series InSAR algorithms in a common framework. GIAnT was developed for

  1, Rapid generation of time-series products from interferogram.
  2. Direct comparison of time-series InSAR products using different
     algorithms.
  3. Cal-Val for time-series InSAR.

The toolbox currently includes implementations of SBAS, N-SBAS and MInTS algorithms. The toolbox also includes support for using weather model data for stratified troposphere corrections and GPS data for orbital error corrections.

gmtsar
InSAR processing system for users familiar with GMT
License: GPL-3
Debian package not available
Language: C, csh

GMTSAR is an open source Interferometric SAR (Synthetic Aperture Radar) processing system designed for users familiar with Generic Mapping Tools (GMT). The code is written in C and will compile on any computer where GMT and NETCDF are installed. The system has three main components:

  1. a preprocessor for each satellite data type (e.g., ERS, Envisat,
     and ALOS) to convert the native format and orbital information
     into a generic format
  2. an InSAR processor to focus and align stacks of images, map
     topography into phase, and form the complex interferogram
  3. a postprocessor, mostly based on GMT, to filter the interferogram
     and construct interferometric products of phase, coherence, phase
     gradient, and line-of sight displacement in both radar and
     geographic coordinates.

GMT is used to display all the products as postscript files and KML images for Google Earth. A set of C-shell scripts has been developed for standard 2-pass processing as well as image alignment for stacking and time series. ScanSAR processing is also possible but requires a knowledgeable user.

pyaps
Tropospheric correction methods for SAR interferometry
License: non-free (free for non-commercial applications)
Debian package not available
Language: Python

PyAPS is a python implementation of stratified tropospheric correction methods using inputs from global atmospheric models (GAM).

The package currently works with ERA-Interim Reanalysis, NARR and MERRA data, but can be easily extended to support more weather models.

python-bufr
Generic BUFR file reader written in python
Responsible: Antonio Valentino
License: GPL-3
Debian package not available
Language: Python

Generic Python BUFR file reader based on the ECMWF BUFR library. File support is similar to the ECMWF BUFR library and the package currently only supports read-only mode.

This module is part of the Pytroll project.

roipac
Repeat Orbit Interferometry PACkage
License: non-free (licenses available at no charge for non-commercial use)
Debian package not available
Language: Fortran, Perl

ROI_PAC allows researchers in the area of topography and surface change to apply Interferometric Synthetic Aperture Radar (InSAR) methods.

InSAR is the synthesis of conventional SAR techniques and interferometry techniques that have been developed over several decades in radio astronomy and radar remote sensing, and in recent years has opened entirely new application areas for radar in the earth system sciences, including topographic mapping and geodesy [v. e.g., Thompson et al. 1986, Massonnet and Feigl 1998, Rosen et al. 2000].

ROI_PAC uses raw radar data, ancillary information from telemetry and navigation solutions, and digital elevation models (DEM; externally provided or interferometrically derived) to produce a variety of derived data products, including the full resolution images, interferograms, phase images measured as principal value and continuously "unwrapped," DEMs, and error estimates.

varres
Variable Resolution Interferogram Resampler
License: non-free (free for non-commercial applications)
Debian package not available
Language: Python

The Varres package implements a curvature-based quadtree-like interferogram resampler.

The original matlab package has been extended to include support for using a predefined map for resampling and estimation of an approximate covariance matrix for the samples.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 236008