Summary

Bugs of task bio-ngs

Total bugs: 8

Open bugs: 4

Fixed bugs: 4

Links to other tasks

Tasks overview

Biology 228 (1744)

Biology development 109 (800)

Next generation sequencing 4 (57)

Phylogeny 10 (60)

Cloud 43 (441)

Content management 0 (0)

Covid-19 146 (1367)

Medical data 1 (1)

Dental 1 (3)

Epidemiology 8 (110)

Hospital information systems 1 (9)

Imaging 213 (1029)

Imaging development 79 (674)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 24 (159)

Practice 7 (48)

Psychology 7 (55)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 3 (7)

Tools 39 (241)

Typesetting 62 (499)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	1	0
important	1	0
normal	1	0
minor	1	0
wishlist	0	0

Summary bugs page of task Next generation sequencing

Looking into bugs of this task is recommended^*

Open bugs in dependent packages

1 serious, 1 important, 1 normal, 1 minor

bcftools (1) Homepage: https://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
870060	bcftools FTBFS on big endian: 107 tests failed	ftbfs, upstream
blasr (1) Homepage: https://github.com/PacificBiosciences/blasr Vcs Debian Med Packaging Team
1067374	blasr: FTBFS: ./obj-x86_64-linux-gnu/../extrautils/StoreQualityByContextFromCmpH5.cpp:40: multiple definition of `main'; toAfg.p/utils_ToAfg.cpp.o:./obj-x86_64-linux-gnu/../utils/ToAfg.cpp:30: first defined here	ftbfs, sid, trixie
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396	last-align: Fails to build source after successful build	ftbfs, sid, trixie
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1053411	sra-sdk: FTBFS with re2 >= 20230601 (which requires abseil)	upstream

Open bugs in suggested packages

Done bugs

bcftools (1) Homepage: https://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
1069234	bcftools: gff2gff.py and guess-ploidy.py fails to run
htslib (1) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
1062344	htslib: NMU diff for 64-bit time_t transition	patch
sra-sdk (2) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1040391	sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
1065961	sra-sdk: Please drop dependencies on python3-distutils	ftbfs

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0