Debian Math Project
Summary
55N31 Persistent homology and applications, topological data analysis
Debian Math packages for TDA (persistent homology ++)

This metapackage contains dependencies for a collection of software useful within topological data analysis in general and persistent homology in particular.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Math to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Math mailing list

Links to other tasks

Debian Math 55N31 Persistent homology and applications, topological data analysis packages

Official Debian packages with high relevance

gudhi-utils
Redskaber fra GUDHI-biblioteket
Maintainer: Gard Spreemann
Versions of package gudhi-utils
ReleaseVersionArchitectures
bullseye3.4.1+dfsg-1amd64,arm64,i386,mips64el,ppc64el,s390x
buster2.3.0+dfsg-2amd64,arm64,i386
sid3.9.0+dfsg-1amd64,arm64,i386,mips64el,ppc64el,riscv64,s390x
trixie3.9.0+dfsg-1amd64,arm64,i386,mips64el,ppc64el,s390x
bookworm3.7.1+dfsg-1amd64,arm64,i386,mips64el,ppc64el,s390x
Popcon: 2 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

GUDHI-biblioteket er et generisk C++-bibliotek til Topological Data Analysis (TDA) og Higher Dimensional Geometry Understanding. Biblioteket tilbyder moderne datastrukturer og algoritmer til at konstruere simple komplekser og beregne vedvarende homologi.

Denne pakke indeholder nogle redskaber bygget med GUDHI-biblioteket.

hera-utils
Redskaber bygget fra biblioteket Hera
Maintainer: Gard Spreemann
Versions of package hera-utils
ReleaseVersionArchitectures
bullseye0~git20200602+dfsg-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bookworm1.0.0+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie2.0.0+git20221115.8bfdd4b+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
sid2.0.0+git20221115.8bfdd4b+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
Popcon: 1 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Nogle simple redskaber for effektive Bottleneck- og Wasserstein-afstande mellem persistensdiagrammer bygget fra biblioteket Hera (se libhera-dev).

phat-utils
Utilities from the PHAT library
Maintainer: Gard Spreemann
Versions of package phat-utils
ReleaseVersionArchitectures
bookworm1.6-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie1.6-2amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
sid1.6-2amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bullseye1.6-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 1 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

The Persistent Homology Algorithm Toolox is a header-only C++ library for performing the filtered Z/2Z (co)boundary matrix operations commonly needed when computing (persistent) (co)homology in topological data analysis.

This package contains some standalone utilities built using the PHAT library, such as persistent homology of a given filtered boundary matrix.

python3-gudhi
Python 3-grænseflade til GUDHI-biblioteket
Maintainer: Gard Spreemann
Versions of package python3-gudhi
ReleaseVersionArchitectures
bookworm3.7.1+dfsg-1amd64,arm64,i386,mips64el,ppc64el,s390x
bullseye3.4.1+dfsg-1amd64,arm64,i386,mips64el,ppc64el,s390x
trixie3.9.0+dfsg-1amd64,arm64,i386,mips64el,ppc64el,s390x
buster2.3.0+dfsg-2amd64,arm64,i386
sid3.9.0+dfsg-1amd64,arm64,i386,mips64el,ppc64el,riscv64,s390x
Popcon: 1 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

GUDHI-biblioteket er et generisk C++-bibliotek til Topological Data Analysis (TDA) og Higher Dimensional Geometry Understanding. Biblioteket tilbyder moderne datastrukturer og algoritmer til at konstruere simple komplekser og beregne vedvarende homologi.

Denne pakke indeholder GUDHI's Python 3-grænseflade.

python3-phat
Python 3 interface for the PHAT library
Maintainer: Gard Spreemann
Versions of package python3-phat
ReleaseVersionArchitectures
bullseye1.6-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bookworm1.6-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie1.6-2amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
sid1.6-2amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

The Persistent Homology Algorithm Toolox is a header-only C++ library for performing the filtered Z/2Z (co)boundary matrix operations commonly needed when computing (persistent) (co)homology in topological data analysis.

This package contains the library's Python 3 interface.

ripser
Hurtig beregning af vedvarende homologi for flag-komplekser
Maintainer: Gard Spreemann
Versions of package ripser
ReleaseVersionArchitectures
bullseye1.1.20200206.286d36-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bookworm1.2.1-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid1.2.1-3amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
trixie1.2.1-3amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
Popcon: 1 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Ripser beregner kun vedvarende homologi for flag-komplekser (såsom Vietoris-Rips-komplekser), hvilket giver stor forøgelse af beregningsforbruget og brugen af hukommelse i forhold til den generelle situation.

Se https://arxiv.org/abs/1908.02518.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 238262