Summary
55N31 Persistent homology and applications, topological data analysis
Debian Math packages for TDA (persistent homology ++)
This metapackage contains dependencies for a collection of software
useful within topological data analysis in general and persistent
homology in particular.
Description
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Debian Math 55N31 Persistent homology and applications, topological data analysis packages
Official Debian packages with high relevance
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gudhi-utils
Utilities from the GUDHI library
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| Versions of package gudhi-utils |
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| Release | Version | Architectures |
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| bullseye | 3.4.1+dfsg-1 | amd64,arm64,i386,mips64el,ppc64el,s390x |
| buster | 2.3.0+dfsg-2 | amd64,arm64,i386 |
| sid | 3.9.0+dfsg-1 | amd64,arm64,i386,mips64el,ppc64el,riscv64,s390x |
| trixie | 3.9.0+dfsg-1 | amd64,arm64,i386,mips64el,ppc64el,s390x |
| bookworm | 3.7.1+dfsg-1 | amd64,arm64,i386,mips64el,ppc64el,s390x |
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License: DFSG free
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The GUDHI library is a generic open source C++ library for
Topological Data Analysis (TDA) and Higher Dimensional Geometry
Understanding. The library offers state-of-the-art data structures
and algorithms to construct simplicial complexes and compute
persistent homology.
This package contains some utilities built with the GUDHI library.
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hera-utils
Utilities built from the Hera library
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| Versions of package hera-utils |
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| Release | Version | Architectures |
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| bullseye | 0~git20200602+dfsg-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| bookworm | 1.0.0+dfsg-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| trixie | 2.0.0+git20221115.8bfdd4b+dfsg-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
| sid | 2.0.0+git20221115.8bfdd4b+dfsg-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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Some simple utilities for efficient bottleneck and Wasserstein
distances between persistence diagrams built from the Hera library
(see libhera-dev).
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phat-utils
Utilities from the PHAT library
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| Versions of package phat-utils |
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| Release | Version | Architectures |
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| bookworm | 1.6-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| trixie | 1.6-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
| sid | 1.6-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
| bullseye | 1.6-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
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The Persistent Homology Algorithm Toolox is a header-only C++ library
for performing the filtered Z/2Z (co)boundary matrix operations
commonly needed when computing (persistent) (co)homology in
topological data analysis.
This package contains some standalone utilities built using the PHAT
library, such as persistent homology of a given filtered boundary
matrix.
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python3-gudhi
Python 3 interface to the GUDHI library
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| Versions of package python3-gudhi |
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| Release | Version | Architectures |
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| bookworm | 3.7.1+dfsg-1 | amd64,arm64,i386,mips64el,ppc64el,s390x |
| bullseye | 3.4.1+dfsg-1 | amd64,arm64,i386,mips64el,ppc64el,s390x |
| trixie | 3.9.0+dfsg-1 | amd64,arm64,i386,mips64el,ppc64el,s390x |
| buster | 2.3.0+dfsg-2 | amd64,arm64,i386 |
| sid | 3.9.0+dfsg-1 | amd64,arm64,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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The GUDHI library is a generic open source C++ library for
Topological Data Analysis (TDA) and Higher Dimensional Geometry
Understanding. The library offers state-of-the-art data structures
and algorithms to construct simplicial complexes and compute
persistent homology.
This package contains GUDHI's Python (3) interface.
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python3-phat
Python 3 interface for the PHAT library
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| Versions of package python3-phat |
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| Release | Version | Architectures |
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| bullseye | 1.6-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| bookworm | 1.6-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| trixie | 1.6-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
| sid | 1.6-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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The Persistent Homology Algorithm Toolox is a header-only C++ library
for performing the filtered Z/2Z (co)boundary matrix operations
commonly needed when computing (persistent) (co)homology in
topological data analysis.
This package contains the library's Python 3 interface.
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ripser
Fast computation of persistent homology of flag complexes
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| Versions of package ripser |
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| Release | Version | Architectures |
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| bullseye | 1.1.20200206.286d36-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| bookworm | 1.2.1-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| sid | 1.2.1-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
| trixie | 1.2.1-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
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License: DFSG free
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Ripser computes persistent homology of flag complexes (such as
Vietoris-Rips complexes) only, allowing significant gains in
computation time and memory usage over the general situation.
See https://arxiv.org/abs/1908.02518.
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