Debian Med Imaging Development packages

Emotive is an interface to a budget Emotiv EPOC EEG headset.

Bio-Formats is a standalone Java library for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats.

Bio-Formats's primary purpose is to convert proprietary microscopy data into an open standard called the OME data model, particularly into the OME-TIFF file format.

The goals of CTK are as follows:

• Provide a unified set of basic programming constructs that are useful for medical imaging applications development
• Facilitate the exchange and combination of code and data
• Document, integrate, and adapt successful solutions
• Avoid the duplication of code and data
• Continuously extend to new tasks within the scope of the toolkit (medical imaging) without burdening existing tasks

This package provides the CTK header files required to compile C++ programs that use CTK.

OpenMEEG consists of state-of-the art solvers for forward problems in the field of MEG and EEG. Solvers are based on the symmetric Boundary Element method [Kybic et al, 2005], providing excellent accuracy, particularly for superficial cortical sources. OpenMEEG can compute four types of lead fields (EEG, MEG, Internal Potential and Electrical Impedence Tomography).

This package provides static libraries and header files.

OpenSlide is a C library that provides a simple interface to read whole-slide images also known as virtual slides.

Whole-slide images, also known as virtual slides, are large, high resolution images used in digital pathology. Reading these images using standard image tools or libraries is a challenge because these tools are typically designed for images that can comfortably be uncompressed into RAM or a swap file. Whole-slide images routinely exceed RAM sizes, often occupying tens of gigabytes when uncompressed. Additionally, whole-slide images are typically multi-resolution, and only a small amount of image data might be needed at a particular resolution.

This library currently supports:

• Trestle (.tif)
• Hamamatsu (.vms, .vmu)
• Aperio (.svs, .tif)
• MIRAX (.mrxs)
• Generic tiled TIFF (.tif)

This package contains the java module needed to run OpenSlide applications.

VIA is a volumetric image analysis suite. The included libraries provide about 70 image analysis functions.

This package provides the header files and static libraries of vialib, vxlib and viaio.

Collection of various Perl module used by other MNI software packages.