Debian Med Project
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Summary
Oncology
Debian Med packages for oncology

This metapackage will install tools that are useful for radiation oncology.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

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Debian Med Oncology packages

Official Debian packages with high relevance

Dicompyler
radiation therapy research platform
Versions of package dicompyler
ReleaseVersionArchitectures
wheezy0.4.1-1-1all
jessie0.4.2-2all
stretch0.4.2-3all
buster0.4.2.0-2all
bullseye0.4.2.0+git20200106.2643e0e-1all
sid0.4.2.0+git20200106.2643e0e-1all
Popcon: 6 users (1 upd.)*
Versions and Archs
 License: DFSG free
Git

Dicompyler is an extensible, fully open source radiation therapy research platform based on the DICOM standard. It also functions as a cross-platform DICOM RT viewer.

Features:

  • Import CT Images, DICOM RT structure set, RT dose and RT plan files
  • Extensible plugin system with included plugins:
    • 2D image viewer with dose and structure overlay
    • Dose volume histogram viewer with the ability to analyze DVH parameters
    • DICOM data tree viewer
    • Patient anonymizer
Please cite: A. Panchal and R. Keyes: Dicompyler: An Open Source Radiation Therapy Research Platform with a Plugin Architecture. Medical Physics 37:3245 (2010)
Orthanc-wsi
Whole-slide imaging support for Orthanc (digital pathology)
Versions of package orthanc-wsi
ReleaseVersionArchitectures
buster0.6-2amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
bullseye0.7-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid0.7-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 47 users (7 upd.)*
Versions and Archs
 License: DFSG free
Git

Orthanc-WSI brings support of whole-slide imaging for digital pathology into Orthanc, the lightweight, RESTful Vendor Neutral Archive for medical imaging.

This package contains two command-line tools to convert whole-slide images to and from DICOM. Support for proprietary file formats is available through OpenSlide. The package also contains an Orthanc plugin to display such DICOM images by any standard Web browser. The implementation follows DICOM Supplement 145.
Please cite: Sebastien Jodogne: The Orthanc Ecosystem for Medical Imaging. J Digit Imaging (2018)
Simrisc
simulation model for breast cancer risk
Versions of package simrisc
ReleaseVersionArchitectures
bullseye13.03.00-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid13.03.00-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 0 users (0 upd.)*
Versions and Archs
 License: DFSG free
Git

SiMRiSC is simulation model for breast cancer screening. It was originally designed by Marcel Greuter around 2010, and then updated by Chris de Jonge in 2015. This current version is a complete rewrite of the original sources by Frank B. Brokken.
Please cite: Du Y, Sidorenkov G, Heuvelmans MA, Groen HJM, Vermeulen KM, Greuter MJW and de Bock GH: Cost-effectiveness of lung cancer screening with low-dose computed tomography in heavy smokers: a microsimulation modelling study. (PubMed,eprint) Breast 135:121-129 (2020)

Packaging has started and developers might try the packaging code in VCS

Uw-prism
software tools for radiation therapy planning
Versions of package uw-prism
ReleaseVersionArchitectures
VCS1.5-2-1all
Versions and Archs
 License: LLGPL
Debian package not available
Git
Version: 1.5-2-1

The Prism project is a long term project to build software tools for radiation therapy planning, including artificial intelligence tools as well as manual simulation systems.
Please cite: I. J. Kalet, J. P. Jacky, M. M. Austin-Seymour, S. M. Hummel, K. J. Sullivan and J. M. Unger: Prism: a new approach to radiotherapy planning software. (PubMed,eprint) Int J Radiat Oncol Biol Phys. 36(2):451-61 (1996)

No known packages available

Planunc
tools for radiotherapy treatment planning
License: needs to be clarified, registration required
Debian package not available

PLanUNC (PLUNC) is a portable, adaptable, and extensible set of software tools for radiotherapy treatment planning (RTP) that has been under active development in the Department of Radiation Oncology at the University of North Carolina (UNC) for approximately 20 years. In 1992, development work branched into separate paths at UNC (PLanUNC) and Sherouse Systems, Inc. (GRATISTM). The current UNC tools encompass the full range of RTP functions including image importing and processing, virtual simulation, dose calculation, plan evaluation, and planning for intensity modulated radiotherapy. PLanUNC source code and related software are licensed without fee to qualified facilities to support research involving new methods for planning and delivering radiation therapy, and to support RTP training for dosimetrists, physicists, radiation therapists, and radiation oncology residents.
*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 200937