Debian Med Project
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Summary
Oncology
Debian Med-pakker for onkologi

Denne metapakke vil installere værktøjer, som er nyttige for strålingsonkologi.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

Links to other tasks

Debian Med Oncology packages

Official Debian packages with high relevance

Dicompyler
Forskningsplatform for strålebehandling
Versions of package dicompyler
ReleaseVersionArchitectures
jessie0.4.2-2all
wheezy0.4.1-1-1all
stretch0.4.2-3all
buster0.4.2.0-2all
sid0.4.2.0+git20200106.2643e0e-1all
Popcon: 4 users (2 upd.)*
Versions and Archs
License: DFSG free
Git

Dicompyler er en forskningsplatform for strålebehandling udviklet i åben kildekode og baseret på DICOM-standarden. Den fungerer også som en DICOM RT-fremviser på flere platforme.

Funktioner:

  • Importere CT-billeder, DICOM RT-struktursæt, RT-dosis og RT plan-filer
  • Udvidelsessystem med inkluderede udvidelsesmoduler:
  • 2D-billedfremviser med dosis- og strukturoverlag
  • Histogramfremviser for dosisvolume med mulighed for at analysere DVH-parametre
  • DICOM-datatræfremviser
  • Anonymisering af patienter
Please cite: A. Panchal and R. Keyes: Dicompyler: An Open Source Radiation Therapy Research Platform with a Plugin Architecture. Medical Physics 37:3245 (2010)
Orthanc-wsi
Whole-slide-billedunderstøttelse for Orthanc - digital patologi
Versions of package orthanc-wsi
ReleaseVersionArchitectures
buster0.6-2amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
sid1.0-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye1.0-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 49 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

Orthanc-WSI har understøttelse af whole-slide-billedbehandling til digital patologi i Orthanc, den simple, RESTful Vendor Neutral Archive til medicinsk billeddannelse.

Denne pakke indeholder to kommandolinjeværktøjer til konvertering af whole-slide billeder til og fra DICOM. Understøttelse af proprietære filformater er tilgængelig via OpenSlide. Pakken indeholder også et Orthanc-udvidelsesmodul til at vise sådanne DICOM-billeder for enhver internetbrowser. Implementeringen følger DICOM-tillæg 145.

Please cite: Sebastien Jodogne: The Orthanc Ecosystem for Medical Imaging. J Digit Imaging (2018)
Simrisc
simulation model for breast cancer risk
Versions of package simrisc
ReleaseVersionArchitectures
bullseye14.02.00-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid14.02.00-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
experimental14.05.00-1~exp0amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
upstream14.04.00
Popcon: 1 users (0 upd.)*
Newer upstream!
License: DFSG free
Git

SiMRiSC is simulation model for breast cancer screening. It was originally designed by Marcel Greuter around 2010, and then updated by Chris de Jonge in 2015. This current version is a complete rewrite of the original sources by Frank B. Brokken.

Please cite: Du Y, Sidorenkov G, Heuvelmans MA, Groen HJM, Vermeulen KM, Greuter MJW and de Bock GH: Cost-effectiveness of lung cancer screening with low-dose computed tomography in heavy smokers: a microsimulation modelling study. (PubMed,eprint) Breast 135:121-129 (2020)

Official Debian packages with lower relevance

Python3-dicompylercore
core radiation therapy modules for DICOM / DICOM RT used by dicompyler
Versions of package python3-dicompylercore
ReleaseVersionArchitectures
sid0.5.5-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye0.5.5-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

This package provides a Python3 library of core radiation therapy modules for DICOM / DICOM RT used by dicompyler. It includes:

  • dicomparser: parse DICOM objects in an easy-to-use manner
  • dvh: Pythonic access to dose volume histogram (DVH) data
  • dvhcalc: Independent DVH calculation using DICOM RT Dose & RT Structure Set

Packaging has started and developers might try the packaging code in VCS

Uw-prism
software tools for radiation therapy planning
Versions of package uw-prism
ReleaseVersionArchitectures
VCS1.5-2-1all
Versions and Archs
License: LLGPL
Debian package not available
Git
Version: 1.5-2-1

The Prism project is a long term project to build software tools for radiation therapy planning, including artificial intelligence tools as well as manual simulation systems.

Please cite: I. J. Kalet, J. P. Jacky, M. M. Austin-Seymour, S. M. Hummel, K. J. Sullivan and J. M. Unger: Prism: a new approach to radiotherapy planning software. (PubMed,eprint) Int J Radiat Oncol Biol Phys. 36(2):451-61 (1996)

No known packages available

Planunc
tools for radiotherapy treatment planning
License: needs to be clarified, registration required
Debian package not available

PLanUNC (PLUNC) is a portable, adaptable, and extensible set of software tools for radiotherapy treatment planning (RTP) that has been under active development in the Department of Radiation Oncology at the University of North Carolina (UNC) for approximately 20 years. In 1992, development work branched into separate paths at UNC (PLanUNC) and Sherouse Systems, Inc. (GRATISTM). The current UNC tools encompass the full range of RTP functions including image importing and processing, virtual simulation, dose calculation, plan evaluation, and planning for intensity modulated radiotherapy. PLanUNC source code and related software are licensed without fee to qualified facilities to support research involving new methods for planning and delivering radiation therapy, and to support RTP training for dosimetrists, physicists, radiation therapists, and radiation oncology residents.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 203033