Summary
Pharmacology
paquet de Debian Med pour la recherche en pharmacologie
Ce métapaquet contient les dépendances pour une collection de logiciels et de documentations
utiles pour la recherche en pharmacologie.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Med
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Med mailing list
Links to other tasks
|
Debian Med Pharmacology packages
Official Debian packages with high relevance
|
Chemtool
programme de dessin de structures chimiques
|
| Versions of package chemtool |
|---|
| Release | Version | Architectures |
|---|
| sid | 1.6.14-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| bookworm | 1.6.14-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| jessie | 1.6.14-1 | amd64,armel,armhf,i386 |
| stretch | 1.6.14-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| buster | 1.6.14-3 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| bullseye | 1.6.14-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| Debtags of package chemtool: |
|---|
| field | chemistry |
| interface | x11 |
| role | program |
| scope | application |
| uitoolkit | gtk |
| use | editing, learning |
| works-with | image, image:vector |
| works-with-format | svg |
| x11 | application |
|
License: DFSG free
|
|
Chemtool est un éditeur de structure chimique 2D en GTK+ pour X11. Il prend
en charge plusieurs types de liaisons, la plupart des formats de texte
nécessaires à l'écriture en chimie et les flèches en forme de cerce, d'arc
ou courbées.
Les dessins peuvent être exportés dans les formats MOL et PDB, SVG ou XFig
pour des annotations ultérieures, en tant que dessin PiCTex ou comme
fichier bitmap ou Postscript (plusieurs de ces formats grâce au programme
fig2dev, pendant de XFig).
Le paquet contient également un programme d'aide, cht, pour calculer des
formules et des masses moléculaires exactes à partir d'un fichier de dessin
chemtool. Cht peut être appelé directement depuis Chemtool ou bien depuis
la ligne de commande.
|
|
|
R-cran-dosefinding
Planning and Analyzing Dose Finding experiments
|
| Versions of package r-cran-dosefinding |
|---|
| Release | Version | Architectures |
|---|
| jessie | 0.9-12-1 | amd64,armel,armhf,i386 |
| stretch | 0.9-15-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| buster | 0.9-16-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| bullseye | 0.9-17-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| bookworm | 1.0-3-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| sid | 1.0-3-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| upstream | 1.0-4 |
|
License: DFSG free
|
|
The DoseFinding GNU R package provides functions for the design and
analysis of dose-finding experiments (with focus on pharmaceutical Phase
II clinical trials). It provides functions for: multiple contrast tests,
fitting non-linear dose-response models (using Bayesian and non-Bayesian
estimation), calculating optimal designs and an implementation of the
MCPMod methodology.
|
|
|
R-cran-rpact
Confirmatory Adaptive Clinical Trial Design and Analysis
|
| Versions of package r-cran-rpact |
|---|
| Release | Version | Architectures |
|---|
| buster | 1.0.0-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| bullseye | 3.0.3-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| bookworm | 3.3.4-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| sid | 3.3.4-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
|
License: DFSG free
|
|
Design and analysis of confirmatory adaptive clinical trials with
continuous, binary, and survival endpoints according to the methods
described in the monograph by Wassmer and Brannath (2016). This
includes classical group sequential as well as multi-stage adaptive
hypotheses tests that are based on the combination testing principle.
|
|
Debian packages in contrib or non-free
|
Raccoon
preparation of in silico drug screening projects
|
| Versions of package raccoon |
|---|
| Release | Version | Architectures |
|---|
| jessie | 1.0b-1 (contrib) | all |
|
License: DFSG free, but needs non-free components
|
|
The field of computational biology is all about modeling
physiochemical entities. Structural biology is about how
those entities look in 3D and behave. And we have a drug
when we can change that behaviour in a way that we want it
to be changed - and only that behaviour.
Some good part of the characterisation of promising
drug-like compounds for their interaction with a larger protein
can be done on computers. This package helps with getting
collections of small ligands prepared to be fitted against
a particular protein of known structure. That docking itself
is then to be performed by autodock or autodock-vina.
Raccoon may not find the drug, but it may well find a
lead to it. To have this package with Debian shall help
smaller biochemistry labs and grants an opportunity for the
general public to educate itself and/or actively join in to
help the world .... just a bit.
|
|
