Summary
Pharmacology
pacchetti Debian Med per la ricerca farmaceutica
Questo metapacchetto contiene le dipendenze per una raccolta di software e
documentazione che è utile per la ricerca farmacologica.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Med
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Med mailing list
Links to other tasks
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Debian Med Pharmacology packages
Official Debian packages with high relevance
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Chemtool
programma per il disegno di strutture chimiche
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| Versions of package chemtool |
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| Release | Version | Architectures |
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| sid | 1.6.14-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| bookworm | 1.6.14-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| jessie | 1.6.14-1 | amd64,armel,armhf,i386 |
| stretch | 1.6.14-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| buster | 1.6.14-3 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| bullseye | 1.6.14-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| Debtags of package chemtool: |
|---|
| field | chemistry |
| interface | x11 |
| role | program |
| scope | application |
| uitoolkit | gtk |
| use | editing, learning |
| works-with | image, image:vector |
| works-with-format | svg |
| x11 | application |
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License: DFSG free
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Chemtool è un editor 2D per X11 per strutture chimiche basato su GTK+.
Supporta molti stili per i legami, la maggior parte dei tipi di testo
necessari per impaginare testi chimici e spline/archi/frecce curve.
I disegni possono essere esportati in formato MOL e PDB, in formato SVG
* XFig per ulteriori annotazioni, come disegni PiCTex, come bitmap o
file PostScript (molti di questi grazie a fig2dev, il programma compagno
di Xfig).
Il pacchetto contiene anche un programma di aiuto, cht, per calcolare
le formule somma e il peso molecolare (esatto) a partire da un file di
disegno di chemtool. Cht può essere invocato direttamente da Chemtool o
dalla console.
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R-cran-dosefinding
pianificazione e analisi di esperimenti di determinazione della dose
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| Versions of package r-cran-dosefinding |
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| Release | Version | Architectures |
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| jessie | 0.9-12-1 | amd64,armel,armhf,i386 |
| stretch | 0.9-15-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| buster | 0.9-16-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| bullseye | 0.9-17-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| bookworm | 1.0-3-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| sid | 1.0-3-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| upstream | 1.0-4 |
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License: DFSG free
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Il pacchetto GNU R DoseFinding fornisce funzioni per la progettazione e
l'analisi di esperimenti di determinazione della dose (con attenzione agli
studi clinici farmaceutici di fase II). Fornisce funzioni per: test con
contrasti multipli, fit di modelli dose-risposta non lineari (usando stime
bayesiane e non bayesiane), calcolo del design ottimale e implementazione
della metodologia MCPMod.
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R-cran-rpact
Confirmatory Adaptive Clinical Trial Design and Analysis
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| Versions of package r-cran-rpact |
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| Release | Version | Architectures |
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| buster | 1.0.0-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
| bullseye | 3.0.3-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| bookworm | 3.3.4-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
| sid | 3.3.4-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
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Design and analysis of confirmatory adaptive clinical trials with
continuous, binary, and survival endpoints according to the methods
described in the monograph by Wassmer and Brannath (2016). This
includes classical group sequential as well as multi-stage adaptive
hypotheses tests that are based on the combination testing principle.
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Debian packages in contrib or non-free
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Raccoon
preparation of in silico drug screening projects
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| Versions of package raccoon |
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| Release | Version | Architectures |
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| jessie | 1.0b-1 (contrib) | all |
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License: DFSG free, but needs non-free components
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The field of computational biology is all about modeling
physiochemical entities. Structural biology is about how
those entities look in 3D and behave. And we have a drug
when we can change that behaviour in a way that we want it
to be changed - and only that behaviour.
Some good part of the characterisation of promising
drug-like compounds for their interaction with a larger protein
can be done on computers. This package helps with getting
collections of small ligands prepared to be fitted against
a particular protein of known structure. That docking itself
is then to be performed by autodock or autodock-vina.
Raccoon may not find the drug, but it may well find a
lead to it. To have this package with Debian shall help
smaller biochemistry labs and grants an opportunity for the
general public to educate itself and/or actively join in to
help the world .... just a bit.
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