PAN Blend Project
Summary
Bugs of task mx
Total bugs: 89
Open bugs: 86
Fixed bugs: 3
Links to other tasks
Tasks overview
Control-systems 22 (255)
Diffraction 25 (258)
Imaging 251 (2111)
Laue 0 (0)
Machine-learning 44 (590)
Modelling 13 (132)
Mx 86 (718)
Mx-dev 1 (5)
Powder 13 (138)
Spectroscopy 13 (171)
Tomography 44 (434)
Xas 11 (117)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 4 0
important 16 2
normal 36 0
minor 8 0
wishlist 20 0

Summary bugs page of task Mx

Immediately looking into bugs of the dependencies of this task is advised (718)*

Open bugs in dependent packages

4 serious, 16 important, 36 normal, 8 minor, 20 wishlist
apbs (1) Homepage: http://www.poissonboltzmann.org/ Vcs Debichem Team
1034627 apbs: compile with PBAM and PBSAM support
cctbx (1) Homepage: https://github.com/cctbx/cctbx_project Vcs Debian Science Maintainers
1119699 cctbx: ftbfs with pip 25.3 fixed-upstream, forky, ftbfs, sid
coot (1) Homepage: https://github.com/pemsley/coot Vcs Debian Science Maintainers
1072286 coot: add autopkgtest for coot executable patch
dials (2) Homepage: https://github.com/dials/dials Vcs Debian Science Maintainers
1088487 python3-dials: move from twitter-bootstrap{3,4} to bootstrap-html (v5) upstream
1117996 dials: autopkgtest regression with scikit-learn 1.7.2 pending
extra-data (1) Homepage: https://github.com/European-XFEL/EXtra-data Vcs Debian Python Team
1123521 extra-data: FTBFS: FAILED ../../../extra_data/tests/test_validation.py::test_validate_run[0.5] forky, ftbfs, sid
gnuplot (58) Homepage: https://gnuplot.sourceforge.net/ Vcs Debian Science Team
222883 gnuplot: load files and history upstream
227645 Document how to plot compressed file fixed-upstream, patch, upstream
248426 set terminal pdf doesn't work fixed-upstream
273002 Can not type non-ascii characters fixed-upstream, upstream
273245 gnuplot prevents additional axes in too many cases upstream
305501 gnuplot: home/end keys don't work
404270 gnuplot: license violation
445811 gnuplot: default y2axis labels have different offset than y1axis labels (postscript) upstream
479445 gnuplot: wrong line numbers for missing files reported during replot fixed-upstream, upstream
540406 the wxt driver deserves its own package patch
544666 completion works on filesystem object instead of gnuplot's commands upstream, wontfix
596870 gnuplot: Can not type non-ascii characters fixed-upstream, upstream
663211 gnuplot: Introduce arbitrary scaling for the (y) axis, broken bar charts
681646 gnuplot: somtimes forgets previous command (can't see it in history either)
705896 gnuplot-x11: gnuplot -persist core-dump without X11 DISPLAY moreinfo, unreproducible
711139 gnuplot-qt: the grid doesn't work with the 'qt' terminal in -persist state fixed-upstream
711141 gnuplot-qt: zooming doesn't work with the 'qt' terminal in -persist state fixed-upstream
711142 zooming in a gnuplot terminal yields blank contents when there should be a part of a segment fixed-upstream
720403 PDF and PS terminal output compress the second (and later) page(s) if text rotation is used
741074 gnuplot-nox: By default no plots (or error messages) are generated fixed-upstream
743014 unwanted space in gnuplot tab autocomplete
743247 gnuplot: Running load destroys arguments from call fixed-upstream, upstream
748400 gnuplot: Buffer overflow in epslatex terminal fixed-upstream, upstream
748966 Excess argument in call to function int_error fixed-upstream, upstream
750636 gnuplot doesn't work if $GNUTERM contains an unsupported terminal
755900 gnuplot.info has multiple copies of some nodes!
755903 Have to invoke gnuplot with two copies of same input file
757906 Dependency solution problems currently with gnuplog
761470 gnuplot-qt: please provide a desktop file and icons
762006 gnuplot-x11: incorrect tic positions with y2tics
764751 gnuplot-tex: Post-install scripts should run texhash
770189 gnuplot-qt error
834396 gnuplot-x11: assertion failure rotating splot with mouse
837869 gnuplot: autoscale on y axis buggy with smooth kdensity
841137 gnuplot5-qt: double free or corruption
844484 gnuplot-qt: "Warning: slow font initialization" + graph not displayed in the window
847995 gnuplot: segfault on plot, with wxt, and "Warning: Mismatch between the program and library build versions"
859206 gnuplot: Recompile with more parallel axes
868594 gnuplot: Link against GNU readline to insert non-ascii interactively
880450 gnuplot: bad right margin when xtics label are rotated and aligned
880999 gnuplot: Segfault with false formatted command input
884538 gnuplot-qt: corrupted double-linked list
901614 gnuplot: clipped line segments disappear
905102 gnuplot-doc: gnuplot.pdf does not have images
909649 gnuplot: out of range data in tikz terminal when scaling y with two decimals fixed-upstream
914705 gnuplot: set title ... boxed is undocumented
914709 gnuplot: Mouse coordinates makes little sense in multiplot mode in wxt terminal
914713 gnuplot: set errorbars fullwidth breaks normal plots that use yerrorlines
942570 gnuplot: plot not updated with wxt/gtk3/gnome-shell/wayland
951406 gnuplot: "-" and two 'using' doesn't work in plot/splot
985248 gnuplot: format string bug in PS_load_fontfile()
989028 gnuplot.info: all the terminal types are missing because the build directory is not the source directory in Debian patch, upstream
991686 gnuplot: invalid utf8 input via terminal
1019249 gnuplot-qt: 5.4.4 uninstallable
1099827 gnuplot: command line options -rv and -geometry are unrecognized
1101945 gnuplot: FTBFS if qt6-base-dev is also installed ftbfs
1102921 gnuplot: Can not interact with the generated graphs
1122879 /lib/x86_64-linux-gnu/libharfbuzz.so.0: undefined symbol: FT_Get_Transform
jmol (1) Homepage: https://jmol.sourceforge.net/ Vcs Debichem Team
872418 jmol: Weblinks in Help do not work
openbabel (10) Homepage: https://openbabel.org Vcs Debichem Team
588248 Provide library for static linkage (libopenbabel.a)
716203 [Mayhem] Bug report on openbabel: obminimize crashes with exit status 139
716567 [Mayhem] Bug report on openbabel: obprobe crashes with exit status 139
823890 python-openbabel: doc-base error: openbabel and pybel already define html format
850546 openbabel-gui: Please add a desktop file for obgui
1046720 openbabel: Fails to build source after successful build forky, ftbfs, sid, trixie
1059277 openbabel: CVE-2022-37331 CVE-2022-41793 CVE-2022-42885 CVE-2022-43467 CVE-2022-43607 CVE-2022-44451 CVE-2022-46280 CVE-2022-46289 CVE-2022-46290 CVE-2022-46291 CVE-2022-46292 CVE-2022-46293 CVE-2022-46294 CVE-2022-46295 security, upstream
1073561 openbabel: FTBFS: failing tests test_tautomer_2[27] forky, ftbfs, sid, trixie, unreproducible
1107330 openbabel: autopkgtest uses large amounts of memory
1116462 openbabel: CVE-2025-10994 CVE-2025-10995 CVE-2025-10996 CVE-2025-10997 CVE-2025-10998 CVE-2025-10999 CVE-2025-11000 security, upstream
povray (4) Homepage: http://www.povray.org Vcs Andreas Beckmann
507915 Povray unusable with non-ascii filenames
943557 povray: provide a povray-headless variant with fewer dependencies help
943567 povray on m68k shows incorrect render statistics help
1038542 povray: Depends on SDL 1.2 forky, sid, trixie
pymol (3) Homepage: https://www.pymol.org Vcs Debichem Team
709306 pymol: Crashes when running within xrdp/vnc (no 3D support)
765794 Race condition when running scripts in "stdin" mode
783653 pymol: Segmentation fault immediately after loading pdb
rasmol (1) Homepage: http://rasmol.org Vcs Debian Science Maintainers
1097771 rasmol: ftbfs with GCC-15 forky, ftbfs, sid
theseus (1) Homepage: http://www.theseus3d.org Vcs Debian Med Packaging Team
1105687 theseus: FTBFS with make --shuffle=reverse: ld: cannot find -ltheseus: No such file or directory forky, ftbfs, sid, trixie

Open bugs in suggested packages

2 important
gemmi (2) Homepage: https://project-gemmi.github.io Vcs Debichem Team
1058868 gemmi: Please build shared library patch
1082878 python3-gemmi: Please add the dist-info data's

Done bugs

apbs (1) Homepage: http://www.poissonboltzmann.org/ Vcs Debichem Team
1033528 apbs: autopkgtest regression: apbs_tester.py': [Errno 2] No such file or directory bookworm, bookworm-ignore, patch, sid, trixie
cctbx (1) Homepage: https://github.com/cctbx/cctbx_project Vcs Debian Science Maintainers
1121296 src:cctbx: fails to migrate to testing for too long forky, sid
raster3d (1) Homepage: http://www.bmsc.washington.edu/raster3d/raster3d.html Vcs Debian Med Packaging Team
1119545 raster3d: please build using the default build flags
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Thu, 18 Dec 2025 04:03:08 -0000