PAN Blend Project
Summary
Bugs of task mx
Total bugs: 84
Open bugs: 82
Fixed bugs: 2
Links to other tasks
Tasks overview
Control-systems 23 (270)
Diffraction 30 (339)
Imaging 250 (2090)
Laue 0 (0)
Machine-learning 25 (276)
Modelling 6 (57)
Mx 82 (599)
Mx-dev 1 (10)
Powder 16 (180)
Spectroscopy 21 (264)
Tomography 64 (573)
Xas 7 (39)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 1 0
important 13 1
normal 38 0
minor 9 0
wishlist 20 0

Summary bugs page of task Mx

Immediately looking into bugs of the dependencies of this task is advised (599)*

Open bugs in dependent packages

1 serious, 13 important, 38 normal, 9 minor, 20 wishlist
apbs (2) Homepage: http://www.poissonboltzmann.org/ Vcs Debichem Team
1033528 apbs: autopkgtest regression: apbs_tester.py': [Errno 2] No such file or directory bookworm-ignore, patch
1034627 apbs: compile with PBAM and PBSAM support
cctbx (1) Homepage: https://github.com/cctbx/cctbx_project Vcs Debian Science Maintainers
1029789 FTBFS deliberately on 32 bit archs
extra-data (2) Homepage: https://github.com/European-XFEL/EXtra-data Vcs Debian Python Team
1035135 extra-data: please add autopkgtests (to add coverage for python3-numpy)
1036520 extra-data: please add autopkgtests (to add coverage for python3-matplotlib)
gnuplot (58) Homepage: https://gnuplot.sourceforge.net/ Vcs Debian Science Team
222883 gnuplot: load files and history upstream
227645 Document how to plot compressed file fixed-upstream, patch, upstream
248426 set terminal pdf doesn't work fixed-upstream
273002 Can not type non-ascii characters fixed-upstream, upstream
273245 gnuplot prevents additional axes in too many cases upstream
305501 gnuplot: home/end keys don't work
404270 gnuplot: license violation
445811 gnuplot: default y2axis labels have different offset than y1axis labels (postscript) upstream
479445 gnuplot: wrong line numbers for missing files reported during replot fixed-upstream, upstream
540406 the wxt driver deserves its own package patch
544666 completion works on filesystem object instead of gnuplot's commands upstream, wontfix
596870 gnuplot: Can not type non-ascii characters fixed-upstream, upstream
663211 gnuplot: Introduce arbitrary scaling for the (y) axis, broken bar charts
681646 gnuplot: somtimes forgets previous command (can't see it in history either)
705896 gnuplot-x11: gnuplot -persist core-dump without X11 DISPLAY moreinfo, unreproducible
711139 gnuplot-qt: the grid doesn't work with the 'qt' terminal in -persist state fixed-upstream
711141 gnuplot-qt: zooming doesn't work with the 'qt' terminal in -persist state fixed-upstream
711142 zooming in a gnuplot terminal yields blank contents when there should be a part of a segment fixed-upstream
720403 PDF and PS terminal output compress the second (and later) page(s) if text rotation is used
741074 gnuplot-nox: By default no plots (or error messages) are generated fixed-upstream
743014 unwanted space in gnuplot tab autocomplete
743247 gnuplot: Running load destroys arguments from call fixed-upstream, upstream
748400 gnuplot: Buffer overflow in epslatex terminal fixed-upstream, upstream
748966 Excess argument in call to function int_error fixed-upstream, upstream
750636 gnuplot doesn't work if $GNUTERM contains an unsupported terminal
755900 gnuplot.info has multiple copies of some nodes!
755903 Have to invoke gnuplot with two copies of same input file
757906 Dependency solution problems currently with gnuplog
761470 gnuplot-qt: please provide a desktop file and icons
762006 gnuplot-x11: incorrect tic positions with y2tics
764751 gnuplot-tex: Post-install scripts should run texhash
770189 gnuplot-qt error
834396 gnuplot-x11: assertion failure rotating splot with mouse
837869 gnuplot: autoscale on y axis buggy with smooth kdensity
841137 gnuplot5-qt: double free or corruption
844484 gnuplot-qt: "Warning: slow font initialization" + graph not displayed in the window
847995 gnuplot: segfault on plot, with wxt, and "Warning: Mismatch between the program and library build versions"
859206 gnuplot: Recompile with more parallel axes
868594 gnuplot: Link against GNU readline to insert non-ascii interactively
880450 gnuplot: bad right margin when xtics label are rotated and aligned
880999 gnuplot: Segfault with false formatted command input
884538 gnuplot-qt: corrupted double-linked list
901614 gnuplot: clipped line segments disappear
905102 gnuplot-doc: gnuplot.pdf does not have images
909649 gnuplot: out of range data in tikz terminal when scaling y with two decimals fixed-upstream
914705 gnuplot: set title ... boxed is undocumented
914709 gnuplot: Mouse coordinates makes little sense in multiplot mode in wxt terminal
914713 gnuplot: set errorbars fullwidth breaks normal plots that use yerrorlines
942570 gnuplot: plot not updated with wxt/gtk3/gnome-shell/wayland
951406 gnuplot: "-" and two 'using' doesn't work in plot/splot
985248 gnuplot: format string bug in PS_load_fontfile()
989028 gnuplot.info: missing terminal types patch, upstream
989029 gnuplot-doc: spurious menu at the end of Section 4 of gnuplot.info breaks navigation in info patch, upstream
991686 gnuplot: invalid utf8 input via terminal
1019249 gnuplot-qt: 5.4.4 uninstallable
1024630 gnuplot should not build-depend on emacs-nox only
1027303 gnuplot-doc: The Info manual contains a spurious Texinfo comment "@c <3 [...]" patch, upstream
1064982 with GNUTERM=wxt, "gnuplot -persist" hangs if gnuplot cannot draw before stdin is closed, e.g. with FVWM's ManualPlacement
jmol (1) Homepage: https://jmol.sourceforge.net/ Vcs Debichem Team
872418 jmol: Weblinks in Help do not work
openbabel (7) Homepage: http://openbabel.sourceforge.net Vcs Debichem Team
588248 Provide library for static linkage (libopenbabel.a)
716203 [Mayhem] Bug report on openbabel: obminimize crashes with exit status 139
716567 [Mayhem] Bug report on openbabel: obprobe crashes with exit status 139
823890 python-openbabel: doc-base error: openbabel and pybel already define html format
850546 openbabel-gui: Please add a desktop file for obgui
1046720 openbabel: Fails to build source after successful build ftbfs, sid, trixie
1059277 openbabel: CVE-2022-37331 CVE-2022-41793 CVE-2022-42885 CVE-2022-43467 CVE-2022-43607 CVE-2022-44451 CVE-2022-46280 CVE-2022-46289 CVE-2022-46290 CVE-2022-46291 CVE-2022-46292 CVE-2022-46293 CVE-2022-46294 CVE-2022-46295 security, upstream
povray (4) Homepage: http://www.povray.org Vcs Andreas Beckmann
507915 Povray unusable with non-ascii filenames
943557 povray: provide a povray-headless variant with fewer dependencies help
943567 povray on m68k shows incorrect render statistics help
1038542 povray: Depends on SDL 1.2 sid, trixie
pymol (4) Homepage: https://www.pymol.org Vcs Debichem Team
602610 Package freemol.mengine for full modeling capabilities
709306 pymol: Crashes when running within xrdp/vnc (no 3D support)
765794 Race condition when running scripts in "stdin" mode
783653 pymol: Segmentation fault immediately after loading pdb
python-mrcfile (2) Homepage: https://github.com/ccpem/mrcfile Not maintained in Vcs Debian PaN Maintainers
1035222 python-mrcfile: please add autopkgtests (to add coverage for python3-numpy)
1046311 python-mrcfile: Fails to build source after successful build ftbfs, sid, trixie

Open bugs in suggested packages

1 important
gemmi (1) Homepage: https://project-gemmi.github.io Vcs Debichem Team
1058868 gemmi: Please build shared library patch, wontfix

Done bugs

dials (1) Homepage: https://github.com/dials/dials Vcs Debian Science Maintainers
1059175 dials: FTBFS: Imported target "DXTBX::DXTBX" includes non-existent path ftbfs, patch, sid, trixie
gnuplot (1) Homepage: https://gnuplot.sourceforge.net/ Vcs Debian Science Team
1067582 gnuplot: please provide a profile to break B-D cycle ftbfs
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Thu, 25 Apr 2024 16:21:54 -0000