PAN Blend Project
Summary
The PAN Blend Pure Blend contains 59 packages which are grouped by metapackages. Each metapackage will cause the installation of packages for a specific topic. The following table lists the metapackages of PAN Blend

Tasks page

This is a list of the Tasks PAN Blend is made of:

Table of contents

Coherent-diffraction - coherent diffraction software

This metapackage will install PAN Blend coherent diffraction packages.

Official Debian packages with lower relevance

Pynx
Python tools for Nano-structures Crystallography

No known packages available

Bonsu
phase retrieval software package for real-time visualisation
Hawk
diffraction pattern reconstruction
Ptypy
Ptychography Reconstruction for Python

Control-systems - Debian PAN Control Systems

This metapackage will install Debian PAN packages related to control systems acquisition used in the PAN facilities.

Official Debian packages with high relevance

Ghkl
??? missing short description for package ghkl :-(
Python3-sardana
??? missing short description for package python3-sardana :-(
Python3-tango
??? missing short description for package python3-tango :-(
Python3-taurus
??? missing short description for package python3-taurus :-(
Python3-taurus-pyqtgraph
??? missing short description for package python3-taurus-pyqtgraph :-(
Tango-accesscontrol
??? missing short description for package tango-accesscontrol :-(
Tango-db
??? missing short description for package tango-db :-(
Tango-starter
??? missing short description for package tango-starter :-(

Packaging has started and developers might try the packaging code in VCS

Micromanager
Microscopy Software

No known packages available

Opengda
framework for creating customised data acquisition software for science
Tomographie-preexperiment-data-collector
gather all information from the user that can be

Control-systems-dev - Debian PAN Control System development packages

This metapackage will install Debian PAN packages which might be helpful for development of applications related to control system acquisition.

You might also be interested in the control-system metapackage.

Official Debian packages with high relevance

Libhkl-dev
??? missing short description for package libhkl-dev :-(
Libtango-dev
??? missing short description for package libtango-dev :-(
Python3-sardana
??? missing short description for package python3-sardana :-(
Python3-tango
??? missing short description for package python3-tango :-(
Python3-taurus
??? missing short description for package python3-taurus :-(
Python3-taurus-pyqtgraph
??? missing short description for package python3-taurus-pyqtgraph :-(

No known packages available

Libuca
generic solution to access two-dimensional detectors
Lima
Library for Image Acquisition

Data-reduction-frameworks - Data reduction frameworks

This metapackage will install framework dedicated to the data reduction

Official Debian packages with high relevance

Fityk
??? missing short description for package fityk :-(
Gnuplot
??? missing short description for package gnuplot :-(
Imagej
??? missing short description for package imagej :-(
Libxy-bin
??? missing short description for package libxy-bin :-(
Ngraph-gtk
??? missing short description for package ngraph-gtk :-(
Octave
??? missing short description for package octave :-(
Pymca
??? missing short description for package pymca :-(
Scilab
??? missing short description for package scilab :-(
Silx
??? missing short description for package silx :-(
Spyder3
??? missing short description for package spyder3 :-(
Vistrails
??? missing short description for package vistrails :-(
Xmaxima
??? missing short description for package xmaxima :-(

No known packages available but some record of interest (WNPP bug)

Thredds
The THREDDS Data Server (TDS) is a web server that

No known packages available

Dawn
general purpose data acquisition and processing
Disp
Diffraction Image Statistics Package for R
Edna
Framework to build online data analysis programs
Graphlab
A New Parallel Framework for Machine Learning
Gumtree
general purpose data acq and processing
Mantid
?
Nexpy
A Python GUI to analyze NeXus data

Data-reduction-framework-dev - PAN Debian data reduction framework dev

This metapackage will install all PAN Blend packages. This is a temporary package until we sorted all packages into the right categories.

Official Debian packages with high relevance

Libmgl-dev
??? missing short description for package libmgl-dev :-(
Libnexus-dev
??? missing short description for package libnexus-dev :-(

No known packages available

Cdma
Common Data Model API
Comete
widget toolkit

Diffraction - diffraction software suit

This metapackage will install all diffraction softwares

Official Debian packages with high relevance

Binoculars
??? missing short description for package binoculars :-(
Xrayutilities
??? missing short description for package xrayutilities :-(

Official Debian packages with lower relevance

Nebula
three-dimensional reciprocal space visualization.

Gid - Grazing incidence X-ray and neutron diffraction

This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS softwares

Official Debian packages with high relevance

Xrayutilities
??? missing short description for package xrayutilities :-(

No known packages available

Fitgisaxs
?
Gsas
?
Isgisaxs
gisaxs -- diffraction

Laue - laue software suit

This metapackage will install all laue saoftwares

No known packages available

Esmeralda
Esmeralda Laue Suite

Microscopy - microscopy IR

This metapackage will install all microscopy softwares.

Official Debian packages with high relevance

Gwyddion
??? missing short description for package gwyddion :-(

Official Debian packages with lower relevance

Threeb
??? missing short description for package threeb :-(

Mx - Macro Molecular diffraction

This metapackage will install all MX diffraction softwares.

Official Debian packages with high relevance

Apbs
??? missing short description for package apbs :-(
Autodock
??? missing short description for package autodock :-(
Clustalw
??? missing short description for package clustalw :-(
Gnuplot
??? missing short description for package gnuplot :-(
Imagej
??? missing short description for package imagej :-(
Jmol
??? missing short description for package jmol :-(
Libmmdb2-0
??? missing short description for package libmmdb2-0 :-(
Openbabel
??? missing short description for package openbabel :-(
Povray
??? missing short description for package povray :-(
Pymol
??? missing short description for package pymol :-(
Rasmol
??? missing short description for package rasmol :-(
Raster3d
??? missing short description for package raster3d :-(
Theseus
??? missing short description for package theseus :-(

Official Debian packages with lower relevance

Coot
Crystallographic Object-Oriented Toolkit
Dials
Diffraction Integration for Advance Light Source
Gemmi

Debian packages in contrib or non-free

Powder
?

Packaging has started and developers might try the packaging code in VCS

Cctbx
CCTBX is a toolbox for developing crystallographic
Crystfel
Suite of programs for processing "serial" diffraction data "snapshots"
Nmoldyn
?
Rosetta
molecular biophysics for structural biology

Unofficial packages built by somebody else

Evrouter
?

No known packages available

3dna
3DNA is a versatile, integrated software system for
Adxv
The principal application of adxv is to display
Aimless
This program scales together multiple observations of
Albula
Dectris diffraction image viewer and analysis tool
Aplx
?
Atsas
?
Autoproc
MX data processing
Balbes
BALBES is a system for solving protein structures
Best
optimal planning of X-ray data collection from protein crystals
Biox-xds
?
Bioxhit
?
Bobscript
?
Bp3-old
?
C3d
?
Cath
CATH is a manually curated classification of protein
Ccp4
CCP4 exists to produce and support a world-leading,
Chart
?
Chimera
UCSF Chimera is a highly extensible program for
Chooch
CHOOCH is a program that will automatically determine
Cn2coot
?
Cns
Crystallography & NMR System (CNS) is the result of
Crank
Crank [1] is a program to automate macromolecular
Das
The Distributed Annotation System (DAS) defines a
Dna
?
Domain-finder
DomainFinder is an interactive program for the
Dps2ar
The EMBL-Hamburg automated crystal structure
Dviewer
?
Dyndom3d
DynDom3D is a new program for the analysis of domain
Edna
Framework to build online data analysis programs
Edna
EDNA is a framework for developing plugin-based
Elves
?
Epmr
EPMR is a general-purpose molecular replacement
Escet
?
Fit2d
?
Fobscom
?
Gramm
?
Grasp
?
Harker
?
Hbplus
?
Hca
?
Hkl2map
?
Hyss
?
Imosflm
?
Induced-rad-dam
?
Ipymol
?
Ispyb-client
?
Labelit
?
Lam
?
Laue
?
Liged
?
Ligplot
?
Ligplus
?
Lscale
?
Maid
?
Main
?
Mar345
?
Marutils
?
Mercury
?
Mlfsom
?
Molscriptmolscript-2.1.2
?
Mosflm
?
Msi
?
Nuccyl
?
Nucplot
?
Onoono80ono90
?
Phaser
?
Phases
?
Phenix
automated determination of macromolecular structures
Phenix
?
Pirate
?
Plotmtv
?
Pointless
?
Promotif
?
Pxpy
?
Raddose
?
Refmac
?
Replace
?
Ribbons
?
Ringer
?
Rmerge
?
Rtools
?
Saxs
?
Shakerr
?
Sharp
?
Shelx
?SHELX is a set of programs for crystal structure
Sir
?
Sir2002
?
Snb2.2
?
Snow
?
Solvesolve-2.08
?
Stac-stac2
?
Strategy
?
Surfnet
?
Tcltkblt
?
Testcase
?
Textal
?
Tools
?
Tops
?
Usf
?
Viewhkl
?
Wink
?
Workflow-ds
?
Workflow-executor
?
Xds
?
Xdsme
XDS Made Easier
Xiaxia2
?
Xprep
?
Xrec
?
Xtalview
?

Mx-dev - Debian PAN Macro-Molecular diffraction development packages

This metapackage will install Debian PAN packages which might be helpful for development of applications related to Macro-Molecular diffraction.

You might also be interested in the mx metapackage.

Official Debian packages with lower relevance

Libccp4-dev
??? missing short description for package libccp4-dev :-(
Libclipper-dev
??? missing short description for package libclipper-dev :-(
Libssm-dev
??? missing short description for package libssm-dev :-(

Packaging has started and developers might try the packaging code in VCS

Libccif-dev
<insert up to 60 chars description>

Powder - powder diffraction

This metapackage will install all powder diffraction softwares.

Official Debian packages with high relevance

Fityk
??? missing short description for package fityk :-(
Libxy-bin
??? missing short description for package libxy-bin :-(
Objcryst-fox
??? missing short description for package objcryst-fox :-(
Pyfai
??? missing short description for package pyfai :-(
Spd
??? missing short description for package spd :-(

No known packages available

Fullprof
?
Jpowder
Lightweight powder diffraction data visualizer
Pygsas
crystallography multi purpose python library
Pyxrd
matrix algorithm for X-ray diffraction patterns
Xrdua
X-ray Powder Diffraction

Small-angle-scattering - small angle scattering

This metapackage will install all PAN Blend small angle scattering.

Official Debian packages with high relevance

Fityk
??? missing short description for package fityk :-(
Pyfai
??? missing short description for package pyfai :-(
Sasview
??? missing short description for package sasview :-(
Spd
??? missing short description for package spd :-(

No known packages available

Bsl
small angle scattering
Diffraction-ring-profiler
A program for extracting electron diffraction ring pattern profiles
Sastbx
Small angle scattering
Saxsview
?

Spectroscopy - X-Rays and Neutron spectroscopy

This metapackage will install all spectroscopy software.

No known packages available

Arpys
ARPES (Angle Resolved PhotoEmission Spectroscopy) data analysis

Tomography - PAN Blend tomography

This metapackage will install all PAN Blend tomography packages.

Official Debian packages with high relevance

Libufo-bin
??? missing short description for package libufo-bin :-(
Mayavi2
??? missing short description for package mayavi2 :-(
Paraview
??? missing short description for package paraview :-(
Python3-skimage
??? missing short description for package python3-skimage :-(
Ufo-filters
??? missing short description for package ufo-filters :-(

Debian packages in contrib or non-free

Python3-pyhst2-cuda
??? missing short description for package python3-pyhst2-cuda :-(

No known packages available

Astra-toolbox
A high-performance GPU MATLAB toolbox for 2D and 3D tomography
Freeart
SART reconstruction algorithm
Imagej-pluggins-tomo
?
Pyastra-toolbox
python binding for the astra-toolbox
Rabbitct
backprojection performance-comparison
Tomographie-preexperiment-data-collector
gather all information from the user that can be
Tomopy
tomographic data processing and image reconstruction toolbox

Xas - EXAFS and XANES

This metapackage will install all EXAFS and XANES softwares.

Official Debian packages with high relevance

Pymca
??? missing short description for package pymca :-(
Quantum-espresso
??? missing short description for package quantum-espresso :-(

Packaging has started and developers might try the packaging code in VCS

Xraylarch
X-ray Analysis for Synchrotron Applications using Python

No known packages available

Prestopronto
Software for analysis of Quick Exafs data