Debian Med Project
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Summary
Statistics
statistiche Debian Med

Questo metapacchetto installerà i pacchetti che sono utili per fare statistiche, in particolar modo per cose relative alla pratica medica.

Description

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Debian Med Statistics packages

Official Debian packages with high relevance

R-bioc-limma
modelli lineari per dati di microarray
Versions of package r-bioc-limma
ReleaseVersionArchitectures
jessie3.22.1+dfsg-1amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
buster3.38.3+dfsg-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
stretch3.30.8+dfsg-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
wheezy3.12.0~dfsg-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid3.38.3+dfsg-1amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,ppc64el,s390x
Popcon: 15 users (40 upd.)*
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License: DFSG free
Git

Un pacchetto Bioconductor per l'analisi di dati microarray di espressione genica, specialmente per l'uso di modelli lineari per l'analisi di esperimenti progettati e la valutazione dell'espressione differenziale. Il pacchetto include funzionalità di pre-elaborazione per array colorati con due colori. I metodi di espressione differenziale si applicano a tutte le piattaforme di array e trattano gli esperimenti Affymetrix, a singolo canale e a due canali in un modo unificato.

R-bioc-multtest
Bioconductor resampling-based multiple hypothesis testing
Versions of package r-bioc-multtest
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sid2.38.0-1amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,ppc64el,s390x
stretch2.30.0-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
buster2.38.0-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
Popcon: 7 users (19 upd.)*
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License: DFSG free
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Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution are implemented (centered, centered and scaled, quantile-transformed). Single-step and step-wise methods are available. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models as well as those based on correlation parameters) are included. When probing hypotheses with t-statistics, users may also select a potentially faster null distribution which is multivariate normal with mean zero and variance covariance matrix derived from the vector influence function. Results are reported in terms of adjusted p-values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.

R-bioc-qvalue
pacchetto GNU R per stima del valore Q per controllo FDR
Versions of package r-bioc-qvalue
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sid2.14.0-1all
wheezy1.30.0-1all
jessie1.40.0-1all
stretch2.6.0-1all
buster2.14.0-1all
Popcon: 10 users (12 upd.)*
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License: DFSG free
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Questo pacchetto prende una lista di valori p ottenuti dai test simultanei di molte ipotesi e stima i loro valori q. Il valore q di un test misura la proporzione di falsi positivi occorsi (chiamato False Discovery Rate) quando quel test particolare è risultato significativo. Vengono generati automaticamente alcuni grafici, che permettono di stabilire valori soglia di significatività ragionevoli. Diversi risultati matematici sono stati mostrati recentemente sull'accuratezza conservativa dei valori q stimati da questo software. Il software può essere applicato a problemi di genomica, immagini del cervello, astrofisica e data mining.

R-cran-ade4
analisi GNU R di dati ecologici
Versions of package r-cran-ade4
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buster1.7-13-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
stretch1.7-5-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
sid1.7-13-1amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,ppc64el,s390x
Popcon: 19 users (24 upd.)*
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License: DFSG free
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Questo pacchetto per GNU R permette l'analisi di dati ecologici e contiene metodi esploratori ed euclidei per le scienze ambientali.

Permette l'analisi e la visualizzazione grafica di dati multivariati.

R-cran-beeswarm
grafico a sciame di api, un'alternativa a stripchart
Versions of package r-cran-beeswarm
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jessie0.1.6-2all
stretch0.2.3-1all
buster0.2.3-3all
sid0.2.3-3all
Popcon: 11 users (6 upd.)*
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License: DFSG free
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Beeswarm è un pacchetto aggiuntivo per l'ambiente statistico R. Il grafico a sciame di api è un grafico di dispersione monodimensionale come "stripchart", ma con punti non sovrapposti strettamente raggruppati.

R-cran-pvclust
cluster gerarchici con p-value attraverso metodo bootstrap multiscala
Versions of package r-cran-pvclust
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jessie1.3-0-1all
stretch2.0-0-1all
buster2.0-0-4all
sid2.0-0-4all
wheezy1.2-2-1all
Popcon: 12 users (7 upd.)*
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License: DFSG free
Git

pvclust è un pacchetto per valutare il grado di incertezza in analisi di cluster gerarchici. Fornisce p-value AU (Approximately Unbiased), oltre a valori BP (probabilità bootstrap) calcolati mediante ricampionamento bootstrap multiscala.

R-cran-randomforest
pacchetto GNU R che implementa il classificatore a foresta stocastica
Versions of package r-cran-randomforest
ReleaseVersionArchitectures
wheezy4.6-6-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid4.6-14-2amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,ppc64el,s390x
buster4.6-14-2amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
stretch4.6-12-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
jessie4.6-10-1amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
squeeze4.5-34-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
Debtags of package r-cran-randomforest:
devellang:r, library
fieldbiology, biology:bioinformatics, medicine
interfacecommandline
roledevel-lib, shared-lib
Popcon: 23 users (12 upd.)*
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License: DFSG free
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RandomForest implementa l'algoritmo per foresta stocastica di Breiman (basato sul codice Fortran originale di Breiman e Cutler) per la classificazione e regressione. Può anche essere usato in modalità senza supervisione per valutare la prossimità tra punti dei dati.

La tecnica usa alberi decisionali multipli e combina i loro voti individuali.

R-cran-rwave
GNU R time-frequency analysis of 1-D signals
Versions of package r-cran-rwave
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sid2.4-8-2amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,ppc64el,s390x
buster2.4-8-2amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
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A set of R functions which provide an environment for the Time-Frequency analysis of 1-D signals (and especially for the wavelet and Gabor transforms of noisy signals). It was originally written for Splus by Rene Carmona, Bruno Torresani, and Wen L. Hwang, first at the University of California at Irvine and then at Princeton University. Credit should also be given to Andrea Wang whose functions on the dyadic wavelet transform are included. Rwave is based on the book: "Practical Time-Frequency Analysis: Gabor and Wavelet Transforms with an Implementation in S", by Rene Carmona, Wen L. Hwang and Bruno Torresani (1998, eBook ISBN:978008053942), Academic Press.

R-cran-snowfall
GNU R easier cluster computing (based on snow)
Versions of package r-cran-snowfall
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buster1.84-6.1-2all
sid1.84-6.1-2all
Popcon: 4 users (2 upd.)*
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License: DFSG free
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Usability wrapper around snow for easier development of parallel R programs. This package offers e.g. extended error checks, and additional functions. All functions work in sequential mode, too, if no cluster is present or wished. Package is also designed as connector to the cluster management tool sfCluster, but can also used without it.

R-cran-waveslim
GNU R wavelet routines for 1-, 2- and 3-D signal processing
Versions of package r-cran-waveslim
ReleaseVersionArchitectures
sid1.7.5-2amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,ppc64el,s390x
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Basic wavelet routines for time series (1D), image (2D) and array (3D) analysis. The code provided here is based on wavelet methodology developed in Percival and Walden (2000); Gencay, Selcuk and Whitcher (2001); the dual-tree complex wavelet transform (DTCWT) from Kingsbury (1999, 2001) as implemented by Selesnick; and Hilbert wavelet pairs (Selesnick 2001, 2002). All figures in chapters 4-7 of GSW (2001) are reproducible using this package and R code available at the book website(s) below.

R-cran-wavethresh
GNU R wavelets statistics and transforms
Versions of package r-cran-wavethresh
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sid4.6.8-2amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,ppc64el,s390x
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Popcon: 3 users (11 upd.)*
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Performs 1, 2 and 3D real and complex-valued wavelet transforms, nondecimated transforms, wavelet packet transforms, nondecimated wavelet packet transforms, multiple wavelet transforms, complex-valued wavelet transforms, wavelet shrinkage for various kinds of data, locally stationary wavelet time series, nonstationary multiscale transfer function modeling, density estimation.

Official Debian packages with lower relevance

Science-statistics
pacchetti Debian Science per la statistica
Versions of package science-statistics
ReleaseVersionArchitectures
wheezy1.0all
jessie1.4all
stretch1.7all
buster1.8all
sid1.8all
squeeze0.12all
Debtags of package science-statistics:
rolemetapackage
suitedebian
Popcon: 18 users (8 upd.)*
Versions and Archs
License: DFSG free
Git

Questo metapacchetto fa parte del Debian Pure Blend "Debian Science" e installa pacchetti relativi alla statistica. Questa è un'attività generica che può essere utile per qualsiasi lavoro scientifico. Dipende da moltissimi pacchetti R, oltre che da alcuni altri strumenti che sono utili per fare statistiche. Inoltre è suggerita l'attività Debian Science per la matematica per installare, in modo opzionale, tutto il software relativo alla matematica.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 200747