Debian Med Project
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Summary
Statistics
Debian Med statistics

This metapackage will install packages which are helpful to do statistics with a special focus on tasks in medical care.

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Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

Links to other tasks
Index of all tasks

Debian Med Statistics packages

Official Debian packages with high relevance

r-bioc-edger
??? missing short description for package r-bioc-edger :-(
Versions of package r-bioc-edger
ReleaseVersionArchitectures
trixie4.4.2+dfsg-1amd64,arm64,ppc64el,riscv64,s390x
bullseye3.32.1+dfsg-1amd64,arm64,armhf,i386
bookworm3.40.2+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid4.4.2+dfsg-2amd64,arm64,loong64,ppc64el,riscv64
upstream4.10.0
Popcon: 41 users (37 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: Mark D. Robinson, Davis J. McCarthy and Gordon K. Smyth: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. (PubMed,eprint) Bioinformatics 26,:139-140 (2010)
Registry entries: Bio.tools  SciCrunch  Bioconda 
r-bioc-limma
??? missing short description for package r-bioc-limma :-(
Versions of package r-bioc-limma
ReleaseVersionArchitectures
bookworm3.54.1+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie3.62.2+dfsg-1amd64,arm64,ppc64el,riscv64,s390x
sid3.62.2+dfsg-2amd64,arm64,loong64,ppc64el,riscv64
bullseye3.46.0+dfsg-1amd64,arm64,armhf,i386
upstream3.68.2
Popcon: 141 users (138 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: Gordon K. Smyth: Limma: linear models for microarray data. (eprint) :397-420 (2005)
Registry entries: Bio.tools  SciCrunch  Bioconda 
r-bioc-multtest
??? missing short description for package r-bioc-multtest :-(
Versions of package r-bioc-multtest
ReleaseVersionArchitectures
trixie2.62.0-2amd64,arm64,ppc64el,riscv64,s390x
bullseye2.46.0-1amd64,arm64,armhf,i386
bookworm2.54.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid2.62.0-3amd64,arm64,loong64,ppc64el,riscv64
upstream2.68.0
Popcon: 9 users (40 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: Katherine S. Pollard, Sandrine Dudoit and Mark J. van der Laan: Multiple Testing Procedures: R multtest Package and Applications to Genomics, in Bioinformatics and Computational Biology Solutions Using R and Bioconductor. :251-272 (2005)
r-bioc-qvalue
??? missing short description for package r-bioc-qvalue :-(
Versions of package r-bioc-qvalue
ReleaseVersionArchitectures
bullseye2.22.0-1all
sid2.38.0-3all
trixie2.38.0-2all
bookworm2.30.0-1all
upstream2.44.0
Popcon: 7 users (37 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: John D Storey and Robert Tibshirani: Statistical significance for genomewide studies. (PubMed,eprint) Proceedings of the National Academy of Sciences of the United States of America 100(16):9440-9445 (2003)
r-cran-ade4
??? missing short description for package r-cran-ade4 :-(
Versions of package r-cran-ade4
ReleaseVersionArchitectures
trixie1.7-23-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm1.7-22-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye1.7-16-1amd64,arm64,armhf,i386
sid1.7-24-1amd64,arm64,loong64,ppc64el,riscv64
forky1.7-24-1amd64,arm64,loong64,ppc64el,riscv64
Popcon: 142 users (161 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: Stéphane Dray and Anne-Béatrice Dufour: The ade4 Package: Implementing the Duality Diagram for Ecologists. (eprint) Journal of Statistical Software 22(4):1-20 (2007)
r-cran-beeswarm
??? missing short description for package r-cran-beeswarm :-(
Versions of package r-cran-beeswarm
ReleaseVersionArchitectures
forky0.4.0-1amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
trixie0.4.0-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm0.4.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye0.2.3-4all
sid0.4.0-2amd64,arm64,loong64,ppc64el,riscv64
sid0.4.0-1armhf,i386,s390x
Popcon: 159 users (147 upd.)*
Versions and Archs
 License: DFSG free
Git
r-cran-pvclust
??? missing short description for package r-cran-pvclust :-(
Versions of package r-cran-pvclust
ReleaseVersionArchitectures
bullseye2.2-0-2all
bookworm2.2-0-2all
trixie2.2-0-2all
forky2.2-0-4all
sid2.2-0-4all
Popcon: 135 users (138 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: Ryota Suzuki and Hidetoshi Shimodaira: Pvclust: an R package for assessing the uncertainty in hierarchical clustering. (PubMed,eprint) Bioinformatics 22(12):1540-1542 (2006)
r-cran-randomforest
??? missing short description for package r-cran-randomforest :-(
Versions of package r-cran-randomforest
ReleaseVersionArchitectures
trixie4.7-1.2-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bullseye4.6-14-3amd64,arm64,armhf,i386
bookworm4.7-1.1-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
forky4.7-1.2-1amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
sid4.7-1.2-1armhf,i386,s390x
sid4.7-1.2-2amd64,arm64,loong64,ppc64el,riscv64
Debtags of package r-cran-randomforest:
devellang:r, library
fieldbiology, biology:bioinformatics, medicine
interfacecommandline
roledevel-lib, shared-lib
Popcon: 162 users (142 upd.)*
Versions and Archs
 License: DFSG free
Git
r-cran-rwave
??? missing short description for package r-cran-rwave :-(
Versions of package r-cran-rwave
ReleaseVersionArchitectures
bullseye2.4-8-3amd64,arm64,armhf,i386
bookworm2.6-5-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie2.6-5-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky2.6-5-1amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
sid2.6-5-1armhf,i386,s390x
sid2.6-5-2amd64,arm64,loong64,ppc64el,riscv64
Popcon: 5 users (37 upd.)*
Versions and Archs
 License: DFSG free
Git
r-cran-snowfall
??? missing short description for package r-cran-snowfall :-(
Versions of package r-cran-snowfall
ReleaseVersionArchitectures
sid1.84-6.3-2all
bookworm1.84-6.2-1all
trixie1.84-6.3-1all
forky1.84-6.3-2all
bullseye1.84-6.1-3all
Popcon: 7 users (37 upd.)*
Versions and Archs
 License: DFSG free
Git
r-cran-waveslim
??? missing short description for package r-cran-waveslim :-(
Versions of package r-cran-waveslim
ReleaseVersionArchitectures
sid1.8.5-2amd64,arm64,loong64,ppc64el,riscv64
sid1.8.5-1armhf,i386,s390x
forky1.8.5-1amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
bullseye1.8.2-1amd64,arm64,armhf,i386
trixie1.8.5-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm1.8.4-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 4 users (38 upd.)*
Versions and Archs
 License: DFSG free
Git
r-cran-wavethresh
??? missing short description for package r-cran-wavethresh :-(
Versions of package r-cran-wavethresh
ReleaseVersionArchitectures
bullseye4.6.8-3amd64,arm64,armhf,i386
bookworm4.7.2-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie4.7.3-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky4.7.3-1amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
sid4.7.3-1armhf,i386,s390x
sid4.7.3-2amd64,arm64,loong64,ppc64el,riscv64
Popcon: 5 users (37 upd.)*
Versions and Archs
 License: DFSG free
Git

Official Debian packages with lower relevance

science-statistics
??? missing short description for package science-statistics :-(
Versions of package science-statistics
ReleaseVersionArchitectures
sid1.15all
bullseye1.14.2all
bookworm1.14.5all
trixie1.15all
forky1.15all
Debtags of package science-statistics:
rolemetapackage
suitedebian
Popcon: 24 users (104 upd.)*
Versions and Archs
 License: DFSG free
Git

Packaging has started and developers might try the packaging code in VCS

rstudio
GNU R IDE
Versions of package rstudio
ReleaseVersionArchitectures
VCS2022.07.1+554-1all
Versions and Archs
 License: AGPL-3.0
Debian package not available
Git
Version: 2022.07.1+554-1

RStudio is an integrated development environment (IDE) for R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management.
*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 284384