DebiChem Project
Summary
3D Visualization
DebiChem 3D Viewers

This metapackage will install 3D Viewers which might be useful for chemists.

Translate description

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for DebiChem to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the DebiChem mailing list

Links to other tasks
Index of all tasks

DebiChem 3D Visualization packages

Official Debian packages with high relevance

adun.app
??? missing short description for package adun.app :-(
Versions of package adun.app
ReleaseVersionArchitectures
bullseye0.81-14amd64,arm64,armhf,i386
sid0.81-15amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky0.81-15amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie0.81-15amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm0.81-14amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Debtags of package adun.app:
fieldbiology, biology:structural
interfacex11
roleprogram
scopeapplication
suitegnustep
uitoolkitgnustep
useanalysing, organizing, viewing
works-with3dmodel, db
x11application
Popcon: 8 users (1 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: Michael A. Johnston, Ignacio Fdez. Galván and Jordi Villà-Freixa: Framework-based design of a new all-purpose molecular simulation application: The Adun simulator. (PubMed) J. Comp. Chem. 26(15):1647-1659 (2005)
Screenshots of package adun.app
avogadro
??? missing short description for package avogadro :-(
Versions of package avogadro
ReleaseVersionArchitectures
bookworm1.97.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid1.101.0-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky1.101.0-1amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
trixie1.100.0-2amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bullseye1.93.0-2amd64,arm64,armhf,i386
upstream2.0.0
Debtags of package avogadro:
fieldchemistry
roleprogram
uitoolkitqt
useviewing
Popcon: 58 users (74 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: Marcus D Hanwell, Donald E Curtis, David C Lonie, Tim Vandermeersch, Eva Zurek and Geoffrey R Hutchison: Avogadro: An advanced semantic chemical editor, visualization, and analysis platform. (eprint) J. Cheminf. 4:17 (2012)
Registry entries: Bio.tools  SciCrunch 
Other screenshots of package avogadro
VersionURL
0.8.1-5https://screenshots.debian.net/screenshot/avogadro/1732
 Screenshots of package avogadro
ballview
??? missing short description for package ballview :-(
Versions of package ballview
ReleaseVersionArchitectures
bullseye1.5.0+git20180813.37fc53c-6amd64,arm64,i386
sid1.5.0+git20220524.d85d2dd-4amd64,arm64,i386,loong64,ppc64el,s390x
sid1.5.0+git20220524.d85d2dd-2riscv64
bookworm1.5.0+git20180813.37fc53c-11amd64,arm64,i386,mips64el,mipsel,ppc64el,s390x
upstream1.5.0+git20260515.70e23cd
Debtags of package ballview:
interfacex11
roleprogram
uitoolkitqt
x11application
Popcon: 4 users (6 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof and Oliver Kohlbacher: BALLView: a tool for research and education in molecular modeling. (PubMed,eprint) Bioinformatics 22(3):365-366 (2006)
Registry entries: SciCrunch 
Screenshots of package ballview
cclib
??? missing short description for package cclib :-(
Versions of package cclib
ReleaseVersionArchitectures
bookworm1.6.2-2all
bullseye1.6.2-2all
sid1.8.1-3all
forky1.8.1-3all
trixie1.8-1all
upstream2.0a1
Popcon: 102 users (102 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: Noel M. O'Boyle, Adam L. Tenderholt and Karol M. Langner: cclib: A library for package-independent computational chemistry algorithms. (eprint) J. Comp. Chem. 29(5):839-845 (2008)
drawxtl
??? missing short description for package drawxtl :-(
Versions of package drawxtl
ReleaseVersionArchitectures
sid5.5-6.1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm5.5-6amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie5.5-6.1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky5.5-6.1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye5.5-5amd64,arm64,armhf,i386
Debtags of package drawxtl:
interfacex11
roleprogram
uitoolkitglut
x11application
Popcon: 12 users (3 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: Larry W. Finger, Martin Kroeker and Brian H. Toby: DRAWxtl, an open-source computer program to produce crystal-structure drawings. (eprint) J. Appl. Cryst. 40:188-192 (2007)
Screenshots of package drawxtl
gabedit
??? missing short description for package gabedit :-(
Versions of package gabedit
ReleaseVersionArchitectures
bookworm2.5.1+ds-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye2.5.1~20200828-1amd64,arm64,armhf,i386
Debtags of package gabedit:
fieldchemistry
roleprogram
uitoolkitgtk
Popcon: 8 users (5 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: Abdul-Rahman Allouche: Gabedit - A graphical user interface for computational chemistry softwares. (eprint) J. Comp. Chem. 32:174-182 (2011)
gamgi
??? missing short description for package gamgi :-(
Versions of package gamgi
ReleaseVersionArchitectures
bookworm0.17.5-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye0.17.3-3amd64,arm64,armhf,i386
Debtags of package gamgi:
roleprogram
uitoolkitgtk
Popcon: 7 users (1 upd.)*
Versions and Archs
 License: DFSG free
Git
The package is enhanced by the following packages: gamgi-data gamgi-doc
Registry entries: SciCrunch 
Screenshots of package gamgi
garlic
??? missing short description for package garlic :-(
Versions of package garlic
ReleaseVersionArchitectures
trixie1.6-3amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky1.6-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
sid1.6-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye1.6-3amd64,arm64,armhf,i386
bookworm1.6-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Debtags of package garlic:
fieldbiology, chemistry
interfacex11
roleprogram
scopeutility
uitoolkitxlib
useviewing
x11application
Popcon: 21 users (37 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: Damir Zucic and Davor Juretic: Precise Annotation of Transmembrane Segments with Garlic - a Free Molecular Visualization Program (eprint) Croatica Chemica Acta 77(1-2):397-401 (2004)
Registry entries: Bio.tools 
gausssum
??? missing short description for package gausssum :-(
Versions of package gausssum
ReleaseVersionArchitectures
bookworm3.0.2-2all
bullseye3.0.2-2all
trixie3.0.2-2all
forky3.0.2-3all
sid3.0.2-3all
Debtags of package gausssum:
fieldchemistry
roleprogram
Popcon: 11 users (1 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: Noel M. O'Boyle, Adam L. Tenderholt and Karol M. Langner: cclib: A library for package-independent computational chemistry algorithms. J. Comp. Chem. 29(5):839-845 (2008)
gdis
??? missing short description for package gdis :-(
Versions of package gdis
ReleaseVersionArchitectures
bookworm0.90-6amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye0.90-6amd64,arm64,armhf,i386
Debtags of package gdis:
fieldchemistry
interface3d, x11
roleprogram
uitoolkitgtk
useediting, learning, viewing
works-with3dmodel
x11application
Popcon: 10 users (1 upd.)*
Versions and Archs
 License: DFSG free
Git
Screenshots of package gdis
gdpc
??? missing short description for package gdpc :-(
Versions of package gdpc
ReleaseVersionArchitectures
sid2.2.5-19amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye2.2.5-14amd64,arm64
bookworm2.2.5-15amd64,arm64,mips64el,ppc64el
trixie2.2.5-16amd64,arm64,ppc64el,riscv64
forky2.2.5-19amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
Debtags of package gdpc:
fieldbiology, biology:structural, chemistry, physics
interfacex11
roleprogram
scopeapplication
uitoolkitgtk
useviewing
works-with3dmodel, image, video
works-with-formatjpg, png
x11application
Popcon: 16 users (44 upd.)*
Versions and Archs
 License: DFSG free
Git
Other screenshots of package gdpc
VersionURL
2.2.5-1https://screenshots.debian.net/screenshot/gdpc/7396
 Screenshots of package gdpc
jmol
??? missing short description for package jmol :-(
Versions of package jmol
ReleaseVersionArchitectures
forky16.3.55+dfsg-1all
sid16.3.55+dfsg-1all
bookworm14.32.83+dfsg-2all
trixie16.2.33+dfsg-1all
bullseye14.6.4+2016.11.05+dfsg1-4all
trixie-backports16.3.55+dfsg-1~bpo13+1all
upstream16.4.1
Debtags of package jmol:
fieldchemistry
roleprogram
scopeutility
useviewing
Popcon: 40 users (51 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: A. Herráez: Biomolecules in the computer: Jmol to the rescue. (PubMed,eprint) Biochem Mol Biol Educ. 34(4):255-261 (2006)
Registry entries: SciCrunch 
Screenshots of package jmol
kalzium
??? missing short description for package kalzium :-(
Versions of package kalzium
ReleaseVersionArchitectures
bullseye20.12.0-1amd64,arm64,armhf,i386
forky26.04.0-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
sid26.04.0-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm22.12.3-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie25.04.0-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
upstream26.04.1
Debtags of package kalzium:
fieldchemistry
interface3d, x11
roleprogram
suitekde
uitoolkitqt
usebrowsing, learning, viewing
works-with3dmodel
x11application
Popcon: 153 users (328 upd.)*
Newer upstream!
 License: DFSG free
Git
qutemol
??? missing short description for package qutemol :-(
Versions of package qutemol
ReleaseVersionArchitectures
bookworm0.4.1~cvs20081111-15amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye0.4.1~cvs20081111-13amd64,arm64,armhf,i386
sid0.4.1~cvs20081111-15amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky0.4.1~cvs20081111-15amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
trixie0.4.1~cvs20081111-15amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
Debtags of package qutemol:
interfacex11
roleprogram
uitoolkitglut, wxwidgets
x11application
Popcon: 13 users (32 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: Marco Tarini, Paolo Cignoni and Claudio Montani: Ambient Occlusion and Edge Cueing for Enhancing Real Time Molecular Visualization. (eprint) IEEE Transactions on Visualization and Computer Graphics 12(5):1237-1244 (2006)
Registry entries: SciCrunch 
Screenshots of package qutemol
rasmol
??? missing short description for package rasmol :-(
Versions of package rasmol
ReleaseVersionArchitectures
bookworm2.7.6.0-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid2.7.6.0-5amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
bullseye2.7.6.0-2amd64,arm64,armhf,i386
trixie2.7.6.0-4amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
Debtags of package rasmol:
fieldchemistry
interfacex11
roleprogram
scopeutility
uitoolkitgtk
uselearning, viewing
x11application
Popcon: 31 users (39 upd.)*
Versions and Archs
 License: DFSG free
Git
The package is enhanced by the following packages: rasmol-doc
Please register by following this link if you are using rasmol.
Please cite: Roger A. Sayle and E. James Milner-White: RasMol: Biomolecular graphics for all. (PubMed) Trends in Biochemical Sciences (TIBS) 20(9):374 (1995)
Registry entries: Bio.tools 
Screenshots of package rasmol
raster3d
??? missing short description for package raster3d :-(
Versions of package raster3d
ReleaseVersionArchitectures
forky3.0-8-3amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
trixie3.0-7-2amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm3.0-7-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye3.0-7-2amd64,arm64,armhf,i386
sid3.0-8-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
Debtags of package raster3d:
fieldbiology, biology:structural
interfacecommandline
roleprogram
scopeapplication
useconverting, viewing
works-with3dmodel, image, image:raster
works-with-formatjpg, png
Popcon: 16 users (31 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: E.A. Merritt and D.J. Bacon: Raster3D Photorealistic Molecular Graphics. (PubMed) Methods in Enzymology 277:505-524 (1997)
Registry entries: Bio.tools 
shelxle
??? missing short description for package shelxle :-(
Versions of package shelxle
ReleaseVersionArchitectures
sid1.0.1552-1amd64,arm64,i386,ppc64el,riscv64,s390x
bullseye1.0.1179-1amd64,arm64,i386
bookworm1.0.1472-1amd64,arm64,i386,mips64el,mipsel,ppc64el,s390x
trixie1.0.1552-1amd64,arm64,i386,ppc64el,riscv64,s390x
upstream1.0.1824
Debtags of package shelxle:
uitoolkitqt
Popcon: 4 users (0 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: Christian B. Hübschle, George M. Sheldrick and Birger Dittrich: ShelXle: a Qt graphical user interface for SHELXL. (eprint) J. Appl. Cryst. 44(6):1281-1284 (2011)
Other screenshots of package shelxle
VersionURL
1.0.564-1https://screenshots.debian.net/screenshot/shelxle/9864
 Screenshots of package shelxle
v-sim
??? missing short description for package v-sim :-(
Versions of package v-sim
ReleaseVersionArchitectures
bullseye3.7.2-8amd64,arm64,armhf,i386
forky3.9.1-2amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie3.8.0-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm3.7.2-9amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid3.9.1-2amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
Debtags of package v-sim:
fieldchemistry, physics
interfacex11
roleprogram
sciencevisualisation
scopeapplication
uitoolkitgtk
useviewing
x11application
Popcon: 16 users (9 upd.)*
Versions and Archs
 License: DFSG free
Git
Screenshots of package v-sim
xbs
??? missing short description for package xbs :-(
Maintainer: Matthew Vernon
Versions of package xbs
ReleaseVersionArchitectures
bookworm0-11amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye0-10amd64,arm64,armhf,i386
sid0-12amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky0-12amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie0-12amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
Debtags of package xbs:
fieldchemistry
interface3d
roleprogram
scopeapplication
uitoolkitxlib
useprinting, viewing
works-withtext
works-with-formatpostscript
x11application
Popcon: 11 users (13 upd.)*
Versions and Archs
 License: DFSG free
Screenshots of package xbs
xcrysden
??? missing short description for package xcrysden :-(
Versions of package xcrysden
ReleaseVersionArchitectures
sid1.6.2-5amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky1.6.2-5amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie1.6.2-4amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm1.6.2-4amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye1.6.2-4amd64,arm64,armhf,i386
upstream1.6.3-rc2
Popcon: 17 users (2 upd.)*
Newer upstream!
 License: DFSG free
Git
Please cite: Anton Kokalj: Computer graphics and graphical user interfaces as tools in simulations of matter at the atomic scale. (eprint) Comp. Mater. Sci. 28(2):155-168 (2003)
Screenshots of package xcrysden
xmakemol
??? missing short description for package xmakemol :-(
Versions of package xmakemol
ReleaseVersionArchitectures
bullseye5.16-10amd64,arm64,armhf,i386
trixie5.16-11amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky5.16-12amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
sid5.16-12amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm5.16-10amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Debtags of package xmakemol:
fieldchemistry
hardwareinput, input:mouse
interfacex11
roleprogram
scopeapplication
uitoolkitmotif
useediting, viewing
x11application
Popcon: 8 users (11 upd.)*
Versions and Archs
 License: DFSG free
Git
Screenshots of package xmakemol

Packaging has started and developers might try the packaging code in VCS

viewmol
graphical front end for computational chemistry programs
Responsible: Debichem Team (Drew Parsons)
Versions of package viewmol
ReleaseVersionArchitectures
VCS2.4.1-26all
Versions and Archs
 License: GPL-2.0+
Debian package not available
Git
Version: 2.4.1-26

Viewmol is able to graphically aid in the generation of molecular structures for computations and to visualize their results.

At present Viewmol includes input filters for Discover, DMol3, Gamess, Gaussian 9x/03, Gulp, Mopac, PQS, Turbomole, and Vamp outputs as well as for PDB files. Structures can be saved as Accelrys' car-files, MDL files, and Turbomole coordinate files. Viewmol can generate input files for Gaussian 9x/03. Viewmol's file format has been added to OpenBabel so that OpenBabel can serve as an input as well as an output filter for coordinates.
Registry entries: SciCrunch 
*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 284137