Debian Med Project
Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Salsa page.
Summary
The Debian Med Pure Blend contains 1298 packages which are grouped by metapackages. Each metapackage will cause the installation of packages for a specific topic. The following table lists the metapackages of Debian Med

Tasks page

This is a list of the Tasks Debian Med is made of:

Table of contents

Biology - Debian Med bioinformatics packages

This metapackage will install Debian packages for use in molecular biology, structural biology and other biological sciences.

Official Debian packages with high relevance

Abacas
??? missing short description for package abacas :-(
Abpoa
??? missing short description for package abpoa :-(
Abyss
??? missing short description for package abyss :-(
Acedb-other
??? missing short description for package acedb-other :-(
Adapterremoval
??? missing short description for package adapterremoval :-(
Adun-core
??? missing short description for package adun-core :-(
Aegean
??? missing short description for package aegean :-(
Aevol
??? missing short description for package aevol :-(
Alien-hunter
??? missing short description for package alien-hunter :-(
Alter-sequence-alignment
??? missing short description for package alter-sequence-alignment :-(
Altree
??? missing short description for package altree :-(
Amap-align
??? missing short description for package amap-align :-(
Ampliconnoise
??? missing short description for package ampliconnoise :-(
Andi
??? missing short description for package andi :-(
Anfo
??? missing short description for package anfo :-(
Any2fasta
??? missing short description for package any2fasta :-(
Aragorn
??? missing short description for package aragorn :-(
Arden
??? missing short description for package arden :-(
Ariba
??? missing short description for package ariba :-(
Art-nextgen-simulation-tools
??? missing short description for package art-nextgen-simulation-tools :-(
Artemis
??? missing short description for package artemis :-(
Artfastqgenerator
??? missing short description for package artfastqgenerator :-(
Assembly-stats
??? missing short description for package assembly-stats :-(
Assemblytics
??? missing short description for package assemblytics :-(
Atac
??? missing short description for package atac :-(
Ataqv
??? missing short description for package ataqv :-(
Atropos
??? missing short description for package atropos :-(
Augur
??? missing short description for package augur :-(
Augustus
??? missing short description for package augustus :-(
Autodock
??? missing short description for package autodock :-(
Autodock-vina
??? missing short description for package autodock-vina :-(
Autogrid
??? missing short description for package autogrid :-(
Avogadro
??? missing short description for package avogadro :-(
Axe-demultiplexer
??? missing short description for package axe-demultiplexer :-(
Baitfisher
??? missing short description for package baitfisher :-(
Bali-phy
??? missing short description for package bali-phy :-(
Ballview
??? missing short description for package ballview :-(
Bamclipper
??? missing short description for package bamclipper :-(
Bamkit
??? missing short description for package bamkit :-(
Bamtools
??? missing short description for package bamtools :-(
Bandage
??? missing short description for package bandage :-(
Barrnap
??? missing short description for package barrnap :-(
Bbmap
??? missing short description for package bbmap :-(
Bcalm
??? missing short description for package bcalm :-(
Bcftools
??? missing short description for package bcftools :-(
Beads
??? missing short description for package beads :-(
Beagle
??? missing short description for package beagle :-(
Beast-mcmc
??? missing short description for package beast-mcmc :-(
Beast2-mcmc
??? missing short description for package beast2-mcmc :-(
Bedops
??? missing short description for package bedops :-(
Bedtools
??? missing short description for package bedtools :-(
Belvu
??? missing short description for package belvu :-(
Berkeley-express
??? missing short description for package berkeley-express :-(
Bifrost
??? missing short description for package bifrost :-(
Bio-eagle
??? missing short description for package bio-eagle :-(
Bio-rainbow
??? missing short description for package bio-rainbow :-(
Bio-tradis
??? missing short description for package bio-tradis :-(
Bio-vcf
??? missing short description for package bio-vcf :-(
Bioawk
??? missing short description for package bioawk :-(
Biobambam2
??? missing short description for package biobambam2 :-(
Biosyntax
??? missing short description for package biosyntax :-(
Bitseq
??? missing short description for package bitseq :-(
Blasr
??? missing short description for package blasr :-(
Blixem
??? missing short description for package blixem :-(
Bolt-lmm
??? missing short description for package bolt-lmm :-(
Bowtie
??? missing short description for package bowtie :-(
Bowtie2
??? missing short description for package bowtie2 :-(
Boxshade
??? missing short description for package boxshade :-(
Bppphyview
??? missing short description for package bppphyview :-(
Bppsuite
??? missing short description for package bppsuite :-(
Brig
??? missing short description for package brig :-(
Btllib-tools
??? missing short description for package btllib-tools :-(
Busco
??? missing short description for package busco :-(
Bustools
??? missing short description for package bustools :-(
Bwa
??? missing short description for package bwa :-(
Canu
??? missing short description for package canu :-(
Cassiopee
??? missing short description for package cassiopee :-(
Cat-bat
??? missing short description for package cat-bat :-(
Cct
??? missing short description for package cct :-(
Cd-hit
??? missing short description for package cd-hit :-(
Cdbfasta
??? missing short description for package cdbfasta :-(
Centrifuge
??? missing short description for package centrifuge :-(
Cgview
??? missing short description for package cgview :-(
Changeo
??? missing short description for package changeo :-(
Chimeraslayer
??? missing short description for package chimeraslayer :-(
Chromhmm
??? missing short description for package chromhmm :-(
Chromimpute
??? missing short description for package chromimpute :-(
Cif-tools
??? missing short description for package cif-tools :-(
Circlator
??? missing short description for package circlator :-(
Circos
??? missing short description for package circos :-(
Clearcut
??? missing short description for package clearcut :-(
Clonalframe
??? missing short description for package clonalframe :-(
Clonalframeml
??? missing short description for package clonalframeml :-(
Clonalorigin
??? missing short description for package clonalorigin :-(
Clustalo
??? missing short description for package clustalo :-(
Clustalw
??? missing short description for package clustalw :-(
Clustalx
??? missing short description for package clustalx :-(
Cnvkit
??? missing short description for package cnvkit :-(
Codonw
??? missing short description for package codonw :-(
Comet-ms
??? missing short description for package comet-ms :-(
Concavity
??? missing short description for package concavity :-(
Conservation-code
??? missing short description for package conservation-code :-(
Coot
??? missing short description for package coot :-(
Covtobed
??? missing short description for package covtobed :-(
Crac
??? missing short description for package crac :-(
Csb
??? missing short description for package csb :-(
Ctffind
??? missing short description for package ctffind :-(
Cutadapt
??? missing short description for package cutadapt :-(
Cutesv
??? missing short description for package cutesv :-(
Daligner
??? missing short description for package daligner :-(
Damapper
??? missing short description for package damapper :-(
Datamash
??? missing short description for package datamash :-(
Dawg
??? missing short description for package dawg :-(
Dazzdb
??? missing short description for package dazzdb :-(
Deblur
??? missing short description for package deblur :-(
Deepnano
??? missing short description for package deepnano :-(
Delly
??? missing short description for package delly :-(
Density-fitness
??? missing short description for package density-fitness :-(
Dextractor
??? missing short description for package dextractor :-(
Dialign
??? missing short description for package dialign :-(
Dialign-tx
??? missing short description for package dialign-tx :-(
Diamond-aligner
??? missing short description for package diamond-aligner :-(
Discosnp
??? missing short description for package discosnp :-(
Disulfinder
??? missing short description for package disulfinder :-(
Dnaclust
??? missing short description for package dnaclust :-(
Dnarrange
??? missing short description for package dnarrange :-(
Dotter
??? missing short description for package dotter :-(
Drop-seq-tools
??? missing short description for package drop-seq-tools :-(
Dssp
??? missing short description for package dssp :-(
Dwgsim
??? missing short description for package dwgsim :-(
E-mem
??? missing short description for package e-mem :-(
Ea-utils
??? missing short description for package ea-utils :-(
Ecopcr
??? missing short description for package ecopcr :-(
Edtsurf
??? missing short description for package edtsurf :-(
Eigensoft
??? missing short description for package eigensoft :-(
Elph
??? missing short description for package elph :-(
Embassy-domainatrix
??? missing short description for package embassy-domainatrix :-(
Embassy-domalign
??? missing short description for package embassy-domalign :-(
Embassy-domsearch
??? missing short description for package embassy-domsearch :-(
Emboss
??? missing short description for package emboss :-(
Emmax
??? missing short description for package emmax :-(
Estscan
??? missing short description for package estscan :-(
Examl
??? missing short description for package examl :-(
Exonerate
??? missing short description for package exonerate :-(
Fasta3
??? missing short description for package fasta3 :-(
Fastahack
??? missing short description for package fastahack :-(
Fastani
??? missing short description for package fastani :-(
Fastaq
??? missing short description for package fastaq :-(
Fastdnaml
??? missing short description for package fastdnaml :-(
Fastlink
??? missing short description for package fastlink :-(
Fastml
??? missing short description for package fastml :-(
Fastp
??? missing short description for package fastp :-(
Fastq-pair
??? missing short description for package fastq-pair :-(
Fastqc
??? missing short description for package fastqc :-(
Fastqtl
??? missing short description for package fastqtl :-(
Fasttree
??? missing short description for package fasttree :-(
Ffindex
??? missing short description for package ffindex :-(
Figtree
??? missing short description for package figtree :-(
Filtlong
??? missing short description for package filtlong :-(
Fitgcp
??? missing short description for package fitgcp :-(
Flash
??? missing short description for package flash :-(
Flexbar
??? missing short description for package flexbar :-(
Flye
??? missing short description for package flye :-(
Fml-asm
??? missing short description for package fml-asm :-(
Freebayes
??? missing short description for package freebayes :-(
Freecontact
??? missing short description for package freecontact :-(
Fsa
??? missing short description for package fsa :-(
Fsm-lite
??? missing short description for package fsm-lite :-(
Gamgi
??? missing short description for package gamgi :-(
Garli
??? missing short description for package garli :-(
Garlic
??? missing short description for package garlic :-(
Gasic
??? missing short description for package gasic :-(
Gatb-core
??? missing short description for package gatb-core :-(
Gdpc
??? missing short description for package gdpc :-(
Gemma
??? missing short description for package gemma :-(
Genometester
??? missing short description for package genometester :-(
Genomethreader
??? missing short description for package genomethreader :-(
Genometools
??? missing short description for package genometools :-(
Genomicsdb-tools
??? missing short description for package genomicsdb-tools :-(
Gentle
??? missing short description for package gentle :-(
Gff2aplot
??? missing short description for package gff2aplot :-(
Gff2ps
??? missing short description for package gff2ps :-(
Gffread
??? missing short description for package gffread :-(
Ggd-utils
??? missing short description for package ggd-utils :-(
Ghmm
??? missing short description for package ghmm :-(
Glam2
??? missing short description for package glam2 :-(
Gmap
??? missing short description for package gmap :-(
Grabix
??? missing short description for package grabix :-(
Graphlan
??? missing short description for package graphlan :-(
Grinder
??? missing short description for package grinder :-(
Gromacs
??? missing short description for package gromacs :-(
Gsort
??? missing short description for package gsort :-(
Gubbins
??? missing short description for package gubbins :-(
Gwama
??? missing short description for package gwama :-(
Harvest-tools
??? missing short description for package harvest-tools :-(
Hhsuite
??? missing short description for package hhsuite :-(
Hilive
??? missing short description for package hilive :-(
Hisat2
??? missing short description for package hisat2 :-(
Hmmer
??? missing short description for package hmmer :-(
Hmmer2
??? missing short description for package hmmer2 :-(
Hyphy-mpi
??? missing short description for package hyphy-mpi :-(
Hyphy-pt
??? missing short description for package hyphy-pt :-(
Idba
??? missing short description for package idba :-(
Igblast
??? missing short description for package igblast :-(
Igor
??? missing short description for package igor :-(
Igv
??? missing short description for package igv :-(
Indelible
??? missing short description for package indelible :-(
Infernal
??? missing short description for package infernal :-(
Insilicoseq
??? missing short description for package insilicoseq :-(
Ipig
??? missing short description for package ipig :-(
Iqtree
??? missing short description for package iqtree :-(
Iva
??? missing short description for package iva :-(
Jaligner
??? missing short description for package jaligner :-(
Jalview
??? missing short description for package jalview :-(
Jellyfish
??? missing short description for package jellyfish :-(
Jellyfish1
??? missing short description for package jellyfish1 :-(
Jmodeltest
??? missing short description for package jmodeltest :-(
Jmol
??? missing short description for package jmol :-(
Kalign
??? missing short description for package kalign :-(
Kallisto
??? missing short description for package kallisto :-(
Kaptive
??? missing short description for package kaptive :-(
Khmer
??? missing short description for package khmer :-(
Kineticstools
??? missing short description for package kineticstools :-(
King-probe
??? missing short description for package king-probe :-(
Kissplice
??? missing short description for package kissplice :-(
Kleborate
??? missing short description for package kleborate :-(
Kma
??? missing short description for package kma :-(
Kmc
??? missing short description for package kmc :-(
Kmer
??? missing short description for package kmer :-(
Kmerresistance
??? missing short description for package kmerresistance :-(
Kraken
??? missing short description for package kraken :-(
Kraken2
??? missing short description for package kraken2 :-(
Lagan
??? missing short description for package lagan :-(
Lamarc
??? missing short description for package lamarc :-(
Lamassemble
??? missing short description for package lamassemble :-(
Lambda-align
??? missing short description for package lambda-align :-(
Lambda-align2
??? missing short description for package lambda-align2 :-(
Last-align
??? missing short description for package last-align :-(
Lastz
??? missing short description for package lastz :-(
Leaff
??? missing short description for package leaff :-(
Lefse
??? missing short description for package lefse :-(
Libpwiz-tools
??? missing short description for package libpwiz-tools :-(
Librg-utils-perl
??? missing short description for package librg-utils-perl :-(
Libvcflib-tools
??? missing short description for package libvcflib-tools :-(
Lighter
??? missing short description for package lighter :-(
Loki
??? missing short description for package loki :-(
Ltrsift
??? missing short description for package ltrsift :-(
Lucy
??? missing short description for package lucy :-(
Lumpy-sv
??? missing short description for package lumpy-sv :-(
Macs
??? missing short description for package macs :-(
Macsyfinder
??? missing short description for package macsyfinder :-(
Maffilter
??? missing short description for package maffilter :-(
Mafft
??? missing short description for package mafft :-(
Malt
??? missing short description for package malt :-(
Mapdamage
??? missing short description for package mapdamage :-(
Mapsembler2
??? missing short description for package mapsembler2 :-(
Maq
??? missing short description for package maq :-(
Maqview
??? missing short description for package maqview :-(
Mash
??? missing short description for package mash :-(
Massxpert
??? missing short description for package massxpert :-(
Mauve-aligner
??? missing short description for package mauve-aligner :-(
Mcaller
??? missing short description for package mcaller :-(
Mecat2
??? missing short description for package mecat2 :-(
Megadepth
??? missing short description for package megadepth :-(
Megahit
??? missing short description for package megahit :-(
Megan-ce
??? missing short description for package megan-ce :-(
Melting
??? missing short description for package melting :-(
Meryl
??? missing short description for package meryl :-(
Metabat
??? missing short description for package metabat :-(
Metaeuk
??? missing short description for package metaeuk :-(
Metaphlan
??? missing short description for package metaphlan :-(
Metastudent
??? missing short description for package metastudent :-(
Mhap
??? missing short description for package mhap :-(
Microbegps
??? missing short description for package microbegps :-(
Microbiomeutil
??? missing short description for package microbiomeutil :-(
Mindthegap
??? missing short description for package mindthegap :-(
Minexpert2
??? missing short description for package minexpert2 :-(
Minia
??? missing short description for package minia :-(
Miniasm
??? missing short description for package miniasm :-(
Minimac4
??? missing short description for package minimac4 :-(
Minimap
??? missing short description for package minimap :-(
Minimap2
??? missing short description for package minimap2 :-(
Mipe
??? missing short description for package mipe :-(
Mira-assembler
??? missing short description for package mira-assembler :-(
Mirtop
??? missing short description for package mirtop :-(
Mlv-smile
??? missing short description for package mlv-smile :-(
Mmb
??? missing short description for package mmb :-(
Mmseqs2
??? missing short description for package mmseqs2 :-(
Mosdepth
??? missing short description for package mosdepth :-(
Mothur
??? missing short description for package mothur :-(
Mptp
??? missing short description for package mptp :-(
Mrbayes
??? missing short description for package mrbayes :-(
Multiqc
??? missing short description for package multiqc :-(
Mummer
??? missing short description for package mummer :-(
Murasaki
??? missing short description for package murasaki :-(
Murasaki-mpi
??? missing short description for package murasaki-mpi :-(
Muscle
??? missing short description for package muscle :-(
Muscle3
??? missing short description for package muscle3 :-(
Mustang
??? missing short description for package mustang :-(
Nanofilt
??? missing short description for package nanofilt :-(
Nanolyse
??? missing short description for package nanolyse :-(
Nanook
??? missing short description for package nanook :-(
Nanopolish
??? missing short description for package nanopolish :-(
Nanostat
??? missing short description for package nanostat :-(
Nanosv
??? missing short description for package nanosv :-(
Nast-ier
??? missing short description for package nast-ier :-(
Ncbi-acc-download
??? missing short description for package ncbi-acc-download :-(
Ncbi-blast+
??? missing short description for package ncbi-blast+ :-(
Ncbi-blast+-legacy
??? missing short description for package ncbi-blast+-legacy :-(
Ncbi-entrez-direct
??? missing short description for package ncbi-entrez-direct :-(
Ncbi-epcr
??? missing short description for package ncbi-epcr :-(
Ncbi-seg
??? missing short description for package ncbi-seg :-(
Ncbi-tools-bin
??? missing short description for package ncbi-tools-bin :-(
Ncbi-tools-x11
??? missing short description for package ncbi-tools-x11 :-(
Ncl-tools
??? missing short description for package ncl-tools :-(
Ncoils
??? missing short description for package ncoils :-(
Neobio
??? missing short description for package neobio :-(
Ngmlr
??? missing short description for package ngmlr :-(
Njplot
??? missing short description for package njplot :-(
Norsnet
??? missing short description for package norsnet :-(
Norsp
??? missing short description for package norsp :-(
Ntcard
??? missing short description for package ntcard :-(
Nxtrim
??? missing short description for package nxtrim :-(
Obitools
??? missing short description for package obitools :-(
Openms
??? missing short description for package openms :-(
Optimir
??? missing short description for package optimir :-(
Pal2nal
??? missing short description for package pal2nal :-(
Paleomix
??? missing short description for package paleomix :-(
Paml
??? missing short description for package paml :-(
Paraclu
??? missing short description for package paraclu :-(
Parasail
??? missing short description for package parasail :-(
Parsinsert
??? missing short description for package parsinsert :-(
Parsnp
??? missing short description for package parsnp :-(
Patman
??? missing short description for package patman :-(
Pbdagcon
??? missing short description for package pbdagcon :-(
Pbhoney
??? missing short description for package pbhoney :-(
Pbjelly
??? missing short description for package pbjelly :-(
Pbsim
??? missing short description for package pbsim :-(
Pbsuite
??? missing short description for package pbsuite :-(
Pdb2pqr
??? missing short description for package pdb2pqr :-(
Perlprimer
??? missing short description for package perlprimer :-(
Perm
??? missing short description for package perm :-(
Pftools
??? missing short description for package pftools :-(
Phast
??? missing short description for package phast :-(
Phipack
??? missing short description for package phipack :-(
Phybin
??? missing short description for package phybin :-(
Phylip
??? missing short description for package phylip :-(
Phylonium
??? missing short description for package phylonium :-(
Phyml
??? missing short description for package phyml :-(
Physamp
??? missing short description for package physamp :-(
Phyutility
??? missing short description for package phyutility :-(
Phyx
??? missing short description for package phyx :-(
Picard-tools
??? missing short description for package picard-tools :-(
Picopore
??? missing short description for package picopore :-(
Pigx-rnaseq
??? missing short description for package pigx-rnaseq :-(
Piler
??? missing short description for package piler :-(
Pilercr
??? missing short description for package pilercr :-(
Pilon
??? missing short description for package pilon :-(
Pinfish
??? missing short description for package pinfish :-(
Pique
??? missing short description for package pique :-(
Pirs
??? missing short description for package pirs :-(
Pizzly
??? missing short description for package pizzly :-(
Placnet
??? missing short description for package placnet :-(
Plasmidid
??? missing short description for package plasmidid :-(
Plasmidomics
??? missing short description for package plasmidomics :-(
Plasmidseeker
??? missing short description for package plasmidseeker :-(
Plast
??? missing short description for package plast :-(
Plink
??? missing short description for package plink :-(
Plink1.9
??? missing short description for package plink1.9 :-(
Plink2
??? missing short description for package plink2 :-(
Plip
??? missing short description for package plip :-(
Poa
??? missing short description for package poa :-(
Populations
??? missing short description for package populations :-(
Porechop
??? missing short description for package porechop :-(
Poretools
??? missing short description for package poretools :-(
Pplacer
??? missing short description for package pplacer :-(
Prank
??? missing short description for package prank :-(
Predictnls
??? missing short description for package predictnls :-(
Presto
??? missing short description for package presto :-(
Prime-phylo
??? missing short description for package prime-phylo :-(
Primer3
??? missing short description for package primer3 :-(
Prinseq-lite
??? missing short description for package prinseq-lite :-(
Proalign
??? missing short description for package proalign :-(
Probabel
??? missing short description for package probabel :-(
Probalign
??? missing short description for package probalign :-(
Probcons
??? missing short description for package probcons :-(
Proda
??? missing short description for package proda :-(
Prodigal
??? missing short description for package prodigal :-(
Profbval
??? missing short description for package profbval :-(
Profisis
??? missing short description for package profisis :-(
Profnet-bval
??? missing short description for package profnet-bval :-(
Profnet-chop
??? missing short description for package profnet-chop :-(
Profnet-con
??? missing short description for package profnet-con :-(
Profnet-isis
??? missing short description for package profnet-isis :-(
Profnet-md
??? missing short description for package profnet-md :-(
Profnet-norsnet
??? missing short description for package profnet-norsnet :-(
Profnet-prof
??? missing short description for package profnet-prof :-(
Profnet-snapfun
??? missing short description for package profnet-snapfun :-(
Profphd-net
??? missing short description for package profphd-net :-(
Profphd-utils
??? missing short description for package profphd-utils :-(
Proftmb
??? missing short description for package proftmb :-(
Progressivemauve
??? missing short description for package progressivemauve :-(
Prokka
??? missing short description for package prokka :-(
Proteinortho
??? missing short description for package proteinortho :-(
Prottest
??? missing short description for package prottest :-(
Provean
??? missing short description for package provean :-(
Pscan-chip
??? missing short description for package pscan-chip :-(
Pscan-tfbs
??? missing short description for package pscan-tfbs :-(
Psortb
??? missing short description for package psortb :-(
Pullseq
??? missing short description for package pullseq :-(
Pycoqc
??? missing short description for package pycoqc :-(
Pycorrfit
??? missing short description for package pycorrfit :-(
Pyensembl
??? missing short description for package pyensembl :-(
Pyfastx
??? missing short description for package pyfastx :-(
Pymol
??? missing short description for package pymol :-(
Pyscanfcs
??? missing short description for package pyscanfcs :-(
Python3-biomaj3-daemon
??? missing short description for package python3-biomaj3-daemon :-(
Python3-bioxtasraw
??? missing short description for package python3-bioxtasraw :-(
Python3-cogent3
??? missing short description for package python3-cogent3 :-(
Python3-emperor
??? missing short description for package python3-emperor :-(
Python3-geneimpacts
??? missing short description for package python3-geneimpacts :-(
Python3-gffutils
??? missing short description for package python3-gffutils :-(
Python3-pairtools
??? missing short description for package python3-pairtools :-(
Python3-pybedtools
??? missing short description for package python3-pybedtools :-(
Python3-sqt
??? missing short description for package python3-sqt :-(
Python3-treetime
??? missing short description for package python3-treetime :-(
Pyvcf
??? missing short description for package pyvcf :-(
Qcat
??? missing short description for package qcat :-(
Qcumber
??? missing short description for package qcumber :-(
Qiime
??? missing short description for package qiime :-(
Qtltools
??? missing short description for package qtltools :-(
Quicktree
??? missing short description for package quicktree :-(
Quorum
??? missing short description for package quorum :-(
Qutemol
??? missing short description for package qutemol :-(
R-bioc-annotate
??? missing short description for package r-bioc-annotate :-(
R-bioc-biostrings
??? missing short description for package r-bioc-biostrings :-(
R-bioc-bitseq
??? missing short description for package r-bioc-bitseq :-(
R-bioc-cner
??? missing short description for package r-bioc-cner :-(
R-bioc-cummerbund
??? missing short description for package r-bioc-cummerbund :-(
R-bioc-deseq2
??? missing short description for package r-bioc-deseq2 :-(
R-bioc-ebseq
??? missing short description for package r-bioc-ebseq :-(
R-bioc-edger
??? missing short description for package r-bioc-edger :-(
R-bioc-genefilter
??? missing short description for package r-bioc-genefilter :-(
R-bioc-geoquery
??? missing short description for package r-bioc-geoquery :-(
R-bioc-hilbertvis
??? missing short description for package r-bioc-hilbertvis :-(
R-bioc-htsfilter
??? missing short description for package r-bioc-htsfilter :-(
R-bioc-impute
??? missing short description for package r-bioc-impute :-(
R-bioc-limma
??? missing short description for package r-bioc-limma :-(
R-bioc-megadepth
??? missing short description for package r-bioc-megadepth :-(
R-bioc-mergeomics
??? missing short description for package r-bioc-mergeomics :-(
R-bioc-metagenomeseq
??? missing short description for package r-bioc-metagenomeseq :-(
R-bioc-mofa
??? missing short description for package r-bioc-mofa :-(
R-bioc-mofa2
??? missing short description for package r-bioc-mofa2 :-(
R-bioc-multiassayexperiment
??? missing short description for package r-bioc-multiassayexperiment :-(
R-bioc-mutationalpatterns
??? missing short description for package r-bioc-mutationalpatterns :-(
R-bioc-phyloseq
??? missing short description for package r-bioc-phyloseq :-(
R-bioc-rtracklayer
??? missing short description for package r-bioc-rtracklayer :-(
R-bioc-scater
??? missing short description for package r-bioc-scater :-(
R-bioc-tfbstools
??? missing short description for package r-bioc-tfbstools :-(
R-cran-adegenet
??? missing short description for package r-cran-adegenet :-(
R-cran-adephylo
??? missing short description for package r-cran-adephylo :-(
R-cran-alakazam
??? missing short description for package r-cran-alakazam :-(
R-cran-ape
??? missing short description for package r-cran-ape :-(
R-cran-bio3d
??? missing short description for package r-cran-bio3d :-(
R-cran-distory
??? missing short description for package r-cran-distory :-(
R-cran-genabel
??? missing short description for package r-cran-genabel :-(
R-cran-kaos
??? missing short description for package r-cran-kaos :-(
R-cran-phangorn
??? missing short description for package r-cran-phangorn :-(
R-cran-phytools
??? missing short description for package r-cran-phytools :-(
R-cran-pscbs
??? missing short description for package r-cran-pscbs :-(
R-cran-qtl
??? missing short description for package r-cran-qtl :-(
R-cran-rotl
??? missing short description for package r-cran-rotl :-(
R-cran-samr
??? missing short description for package r-cran-samr :-(
R-cran-seqinr
??? missing short description for package r-cran-seqinr :-(
R-cran-seurat
??? missing short description for package r-cran-seurat :-(
R-cran-shazam
??? missing short description for package r-cran-shazam :-(
R-cran-spp
??? missing short description for package r-cran-spp :-(
R-cran-tigger
??? missing short description for package r-cran-tigger :-(
R-cran-treespace
??? missing short description for package r-cran-treespace :-(
R-cran-tsne
??? missing short description for package r-cran-tsne :-(
R-cran-vegan
??? missing short description for package r-cran-vegan :-(
R-cran-webgestaltr
??? missing short description for package r-cran-webgestaltr :-(
R-cran-wgcna
??? missing short description for package r-cran-wgcna :-(
R-other-ascat
??? missing short description for package r-other-ascat :-(
R-other-mott-happy.hbrem
??? missing short description for package r-other-mott-happy.hbrem :-(
R-other-rajewsky-dropbead
??? missing short description for package r-other-rajewsky-dropbead :-(
Racon
??? missing short description for package racon :-(
Radiant
??? missing short description for package radiant :-(
Ragout
??? missing short description for package ragout :-(
Rambo-k
??? missing short description for package rambo-k :-(
Rampler
??? missing short description for package rampler :-(
Rapmap
??? missing short description for package rapmap :-(
Rasmol
??? missing short description for package rasmol :-(
Raster3d
??? missing short description for package raster3d :-(
Rate4site
??? missing short description for package rate4site :-(
Raxml
??? missing short description for package raxml :-(
Ray
??? missing short description for package ray :-(
Rdp-alignment
??? missing short description for package rdp-alignment :-(
Rdp-classifier
??? missing short description for package rdp-classifier :-(
Rdp-readseq
??? missing short description for package rdp-readseq :-(
Readseq
??? missing short description for package readseq :-(
Readucks
??? missing short description for package readucks :-(
Reapr
??? missing short description for package reapr :-(
Recan
??? missing short description for package recan :-(
Relion
??? missing short description for package relion :-(
Relion-gui
??? missing short description for package relion-gui :-(
Repeatmasker-recon
??? missing short description for package repeatmasker-recon :-(
Reprof
??? missing short description for package reprof :-(
Resfinder
??? missing short description for package resfinder :-(
Rna-star
??? missing short description for package rna-star :-(
Rnahybrid
??? missing short description for package rnahybrid :-(
Roary
??? missing short description for package roary :-(
Rockhopper
??? missing short description for package rockhopper :-(
Roguenarok
??? missing short description for package roguenarok :-(
Rsem
??? missing short description for package rsem :-(
Rtax
??? missing short description for package rtax :-(
Runcircos-gui
??? missing short description for package runcircos-gui :-(
Saint
??? missing short description for package saint :-(
Salmid
??? missing short description for package salmid :-(
Salmon
??? missing short description for package salmon :-(
Sambamba
??? missing short description for package sambamba :-(
Samblaster
??? missing short description for package samblaster :-(
Samclip
??? missing short description for package samclip :-(
Samtools
??? missing short description for package samtools :-(
Savvy-util
??? missing short description for package savvy-util :-(
Scoary
??? missing short description for package scoary :-(
Scrappie
??? missing short description for package scrappie :-(
Scrm
??? missing short description for package scrm :-(
Scythe
??? missing short description for package scythe :-(
Seaview
??? missing short description for package seaview :-(
Seer
??? missing short description for package seer :-(
Segemehl
??? missing short description for package segemehl :-(
Sepp
??? missing short description for package sepp :-(
Seqan-apps
??? missing short description for package seqan-apps :-(
Seqan-needle
??? missing short description for package seqan-needle :-(
Seqan-raptor
??? missing short description for package seqan-raptor :-(
Seqkit
??? missing short description for package seqkit :-(
Seqmagick
??? missing short description for package seqmagick :-(
Seqprep
??? missing short description for package seqprep :-(
Seqsero
??? missing short description for package seqsero :-(
Seqtk
??? missing short description for package seqtk :-(
Sga
??? missing short description for package sga :-(
Shasta
??? missing short description for package shasta :-(
Shovill
??? missing short description for package shovill :-(
Sibelia
??? missing short description for package sibelia :-(
Sibsim4
??? missing short description for package sibsim4 :-(
Sickle
??? missing short description for package sickle :-(
Sideretro
??? missing short description for package sideretro :-(
Sigma-align
??? missing short description for package sigma-align :-(
Sim4
??? missing short description for package sim4 :-(
Sim4db
??? missing short description for package sim4db :-(
Simka
??? missing short description for package simka :-(
Simkamin
??? missing short description for package simkamin :-(
Ska
??? missing short description for package ska :-(
Skesa
??? missing short description for package skesa :-(
Skewer
??? missing short description for package skewer :-(
Smalt
??? missing short description for package smalt :-(
Smithwaterman
??? missing short description for package smithwaterman :-(
Smrtanalysis
??? missing short description for package smrtanalysis :-(
Snap
??? missing short description for package snap :-(
Snap-aligner
??? missing short description for package snap-aligner :-(
Sniffles
??? missing short description for package sniffles :-(
Snippy
??? missing short description for package snippy :-(
Snp-sites
??? missing short description for package snp-sites :-(
Snpeff
??? missing short description for package snpeff :-(
Snpomatic
??? missing short description for package snpomatic :-(
Snpsift
??? missing short description for package snpsift :-(
Soapaligner
??? missing short description for package soapaligner :-(
Soapdenovo
??? missing short description for package soapdenovo :-(
Soapdenovo2
??? missing short description for package soapdenovo2 :-(
Soapsnp
??? missing short description for package soapsnp :-(
Sortmerna
??? missing short description for package sortmerna :-(
Sourmash
??? missing short description for package sourmash :-(
Spaced
??? missing short description for package spaced :-(
Spades
??? missing short description for package spades :-(
Spaln
??? missing short description for package spaln :-(
Spoa
??? missing short description for package spoa :-(
Sprai
??? missing short description for package sprai :-(
Spread-phy
??? missing short description for package spread-phy :-(
Sra-toolkit
??? missing short description for package sra-toolkit :-(
Srst2
??? missing short description for package srst2 :-(
Ssake
??? missing short description for package ssake :-(
Sspace
??? missing short description for package sspace :-(
Ssw-align
??? missing short description for package ssw-align :-(
Stacks
??? missing short description for package stacks :-(
Staden
??? missing short description for package staden :-(
Staden-io-lib-utils
??? missing short description for package staden-io-lib-utils :-(
Stringtie
??? missing short description for package stringtie :-(
Subread
??? missing short description for package subread :-(
Suitename
??? missing short description for package suitename :-(
Sumaclust
??? missing short description for package sumaclust :-(
Sumatra
??? missing short description for package sumatra :-(
Sumtrees
??? missing short description for package sumtrees :-(
Surankco
??? missing short description for package surankco :-(
Surpyvor
??? missing short description for package surpyvor :-(
Survivor
??? missing short description for package survivor :-(
Svim
??? missing short description for package svim :-(
Swarm
??? missing short description for package swarm :-(
Sweed
??? missing short description for package sweed :-(
T-coffee
??? missing short description for package t-coffee :-(
Tabix
??? missing short description for package tabix :-(
Tantan
??? missing short description for package tantan :-(
Terraphast
??? missing short description for package terraphast :-(
Theseus
??? missing short description for package theseus :-(
Thesias
??? missing short description for package thesias :-(
Tiddit
??? missing short description for package tiddit :-(
Tigr-glimmer
??? missing short description for package tigr-glimmer :-(
Tipp
??? missing short description for package tipp :-(
Tm-align
??? missing short description for package tm-align :-(
Tnseq-transit
??? missing short description for package tnseq-transit :-(
Toil
??? missing short description for package toil :-(
Tombo
??? missing short description for package tombo :-(
Tophat-recondition
??? missing short description for package tophat-recondition :-(
Topp
??? missing short description for package topp :-(
Toppred
??? missing short description for package toppred :-(
Tortoize
??? missing short description for package tortoize :-(
Trace2dbest
??? missing short description for package trace2dbest :-(
Tracetuner
??? missing short description for package tracetuner :-(
Transdecoder
??? missing short description for package transdecoder :-(
Transrate-tools
??? missing short description for package transrate-tools :-(
Transtermhp
??? missing short description for package transtermhp :-(
Tree-ppuzzle
??? missing short description for package tree-ppuzzle :-(
Tree-puzzle
??? missing short description for package tree-puzzle :-(
Treeview
??? missing short description for package treeview :-(
Treeviewx
??? missing short description for package treeviewx :-(
Trf
??? missing short description for package trf :-(
Trim-galore
??? missing short description for package trim-galore :-(
Trimmomatic
??? missing short description for package trimmomatic :-(
Trinityrnaseq
??? missing short description for package trinityrnaseq :-(
Tvc
??? missing short description for package tvc :-(
Twopaco
??? missing short description for package twopaco :-(
Uc-echo
??? missing short description for package uc-echo :-(
Ugene
??? missing short description for package ugene :-(
Umap-learn
??? missing short description for package umap-learn :-(
Umis
??? missing short description for package umis :-(
Uncalled
??? missing short description for package uncalled :-(
Unicycler
??? missing short description for package unicycler :-(
Unikmer
??? missing short description for package unikmer :-(
Varna
??? missing short description for package varna :-(
Vcfanno
??? missing short description for package vcfanno :-(
Vcftools
??? missing short description for package vcftools :-(
Velvet
??? missing short description for package velvet :-(
Velvet-long
??? missing short description for package velvet-long :-(
Velvetoptimiser
??? missing short description for package velvetoptimiser :-(
Veryfasttree
??? missing short description for package veryfasttree :-(
Vg
??? missing short description for package vg :-(
Virulencefinder
??? missing short description for package virulencefinder :-(
Vmatch
??? missing short description for package vmatch :-(
Vsearch
??? missing short description for package vsearch :-(
Vt
??? missing short description for package vt :-(
Wham-align
??? missing short description for package wham-align :-(
Wigeon
??? missing short description for package wigeon :-(
Wise
??? missing short description for package wise :-(
Xpore
??? missing short description for package xpore :-(
Yaha
??? missing short description for package yaha :-(
Yanagiba
??? missing short description for package yanagiba :-(
Yanosim
??? missing short description for package yanosim :-(

Official Debian packages with lower relevance

Adun.app
??? missing short description for package adun.app :-(
Catfishq
??? missing short description for package catfishq :-(
Conda-package-handling
??? missing short description for package conda-package-handling :-(
Dascrubber
??? missing short description for package dascrubber :-(
Dnapi
??? missing short description for package dnapi :-(
Emboss-explorer
??? missing short description for package emboss-explorer :-(
Getdata
??? missing short description for package getdata :-(
Hts-nim-tools
??? missing short description for package hts-nim-tools :-(
Idseq-bench
??? missing short description for package idseq-bench :-(
Illustrate
??? missing short description for package illustrate :-(
Libhdf5-dev
??? missing short description for package libhdf5-dev :-(
Libhnswlib-dev
??? missing short description for package libhnswlib-dev :-(
Maude
??? missing short description for package maude :-(
Metastudent-data
??? missing short description for package metastudent-data :-(
Metastudent-data-2
??? missing short description for package metastudent-data-2 :-(
Python3-anndata
??? missing short description for package python3-anndata :-(
Python3-cgecore
??? missing short description for package python3-cgecore :-(
Python3-cyvcf2
??? missing short description for package python3-cyvcf2 :-(
Python3-deeptools
??? missing short description for package python3-deeptools :-(
Python3-deeptoolsintervals
??? missing short description for package python3-deeptoolsintervals :-(
Python3-htseq
??? missing short description for package python3-htseq :-(
Python3-intake
??? missing short description for package python3-intake :-(
Python3-loompy
??? missing short description for package python3-loompy :-(
Python3-nanoget
??? missing short description for package python3-nanoget :-(
Python3-nanomath
??? missing short description for package python3-nanomath :-(
Python3-ncls
??? missing short description for package python3-ncls :-(
Python3-py2bit
??? missing short description for package python3-py2bit :-(
Python3-pybel
??? missing short description for package python3-pybel :-(
Python3-pychopper
??? missing short description for package python3-pychopper :-(
Python3-pyfaidx
??? missing short description for package python3-pyfaidx :-(
Python3-pyflow
??? missing short description for package python3-pyflow :-(
Python3-pyranges
??? missing short description for package python3-pyranges :-(
Python3-pyrle
??? missing short description for package python3-pyrle :-(
Python3-pysam
??? missing short description for package python3-pysam :-(
Python3-tinyalign
??? missing short description for package python3-tinyalign :-(
Q2-alignment
??? missing short description for package q2-alignment :-(
Q2-cutadapt
??? missing short description for package q2-cutadapt :-(
Q2-dada2
??? missing short description for package q2-dada2 :-(
Q2-demux
??? missing short description for package q2-demux :-(
Q2-emperor
??? missing short description for package q2-emperor :-(
Q2-feature-classifier
??? missing short description for package q2-feature-classifier :-(
Q2-feature-table
??? missing short description for package q2-feature-table :-(
Q2-fragment-insertion
??? missing short description for package q2-fragment-insertion :-(
Q2-metadata
??? missing short description for package q2-metadata :-(
Q2-phylogeny
??? missing short description for package q2-phylogeny :-(
Q2-quality-control
??? missing short description for package q2-quality-control :-(
Q2-quality-filter
??? missing short description for package q2-quality-filter :-(
Q2-sample-classifier
??? missing short description for package q2-sample-classifier :-(
Q2-taxa
??? missing short description for package q2-taxa :-(
Q2-types
??? missing short description for package q2-types :-(
Q2cli
??? missing short description for package q2cli :-(
Q2templates
??? missing short description for package q2templates :-(
R-bioc-annotationhub
??? missing short description for package r-bioc-annotationhub :-(
R-bioc-aroma.light
??? missing short description for package r-bioc-aroma.light :-(
R-bioc-beachmat
??? missing short description for package r-bioc-beachmat :-(
R-bioc-biocneighbors
??? missing short description for package r-bioc-biocneighbors :-(
R-bioc-biocsingular
??? missing short description for package r-bioc-biocsingular :-(
R-bioc-ctc
??? missing short description for package r-bioc-ctc :-(
R-bioc-dnacopy
??? missing short description for package r-bioc-dnacopy :-(
R-bioc-ensembldb
??? missing short description for package r-bioc-ensembldb :-(
R-bioc-experimenthub
??? missing short description for package r-bioc-experimenthub :-(
R-bioc-geneplotter
??? missing short description for package r-bioc-geneplotter :-(
R-bioc-genomicalignments
??? missing short description for package r-bioc-genomicalignments :-(
R-bioc-genomicfiles
??? missing short description for package r-bioc-genomicfiles :-(
R-bioc-genomicranges
??? missing short description for package r-bioc-genomicranges :-(
R-bioc-go.db
??? missing short description for package r-bioc-go.db :-(
R-bioc-grohmm
??? missing short description for package r-bioc-grohmm :-(
R-bioc-gviz
??? missing short description for package r-bioc-gviz :-(
R-bioc-isoformswitchanalyzer
??? missing short description for package r-bioc-isoformswitchanalyzer :-(
R-bioc-org.hs.eg.db
??? missing short description for package r-bioc-org.hs.eg.db :-(
R-bioc-qusage
??? missing short description for package r-bioc-qusage :-(
R-bioc-savr
??? missing short description for package r-bioc-savr :-(
R-bioc-singlecellexperiment
??? missing short description for package r-bioc-singlecellexperiment :-(
R-bioc-structuralvariantannotation
??? missing short description for package r-bioc-structuralvariantannotation :-(
R-bioc-tximport
??? missing short description for package r-bioc-tximport :-(
R-cran-amap
??? missing short description for package r-cran-amap :-(
R-cran-biwt
??? missing short description for package r-cran-biwt :-(
R-cran-boolnet
??? missing short description for package r-cran-boolnet :-(
R-cran-corrplot
??? missing short description for package r-cran-corrplot :-(
R-cran-dynamictreecut
??? missing short description for package r-cran-dynamictreecut :-(
R-cran-epir
??? missing short description for package r-cran-epir :-(
R-cran-fitdistrplus
??? missing short description for package r-cran-fitdistrplus :-(
R-cran-forecast
??? missing short description for package r-cran-forecast :-(
R-cran-gprofiler2
??? missing short description for package r-cran-gprofiler2 :-(
R-cran-minerva
??? missing short description for package r-cran-minerva :-(
R-cran-optimalcutpoints
??? missing short description for package r-cran-optimalcutpoints :-(
R-cran-parmigene
??? missing short description for package r-cran-parmigene :-(
R-cran-pheatmap
??? missing short description for package r-cran-pheatmap :-(
R-cran-qqman
??? missing short description for package r-cran-qqman :-(
R-cran-rcpphnsw
??? missing short description for package r-cran-rcpphnsw :-(
R-cran-rentrez
??? missing short description for package r-cran-rentrez :-(
R-cran-sctransform
??? missing short description for package r-cran-sctransform :-(
Resfinder-db
??? missing short description for package resfinder-db :-(
Science-workflow
??? missing short description for package science-workflow :-(

Debian packages in contrib or non-free

Arb
??? missing short description for package arb :-(
Blimps-utils
??? missing short description for package blimps-utils :-(
Caftools
??? missing short description for package caftools :-(
Cluster3
??? missing short description for package cluster3 :-(
Cufflinks
??? missing short description for package cufflinks :-(
Relion-cuda
??? missing short description for package relion-cuda :-(
Relion-gui-cuda
??? missing short description for package relion-gui-cuda :-(
Seq-gen
??? missing short description for package seq-gen :-(
Seqcluster
??? missing short description for package seqcluster :-(
Sift
??? missing short description for package sift :-(
Solvate
??? missing short description for package solvate :-(
Trnascan-se
??? missing short description for package trnascan-se :-(
Varscan
??? missing short description for package varscan :-(
Vdjtools
??? missing short description for package vdjtools :-(
Vienna-rna
??? missing short description for package vienna-rna :-(

Packaging has started and developers might try the packaging code in VCS

Acacia
Error-corrector for pyrosequenced amplicon reads.
Agat
another GFF analysis toolkit
Amos-assembler
modular whole genome assembler
Apollo
genome annotation viewer and editor
Arvados
managing and analyzing biomedical big data
Axparafit
optimized statistical analysis of host-parasite coevolution
Axpcoords
highly optimized and parallelized porting of pcoords
Bagpipe
genomewide LD mapping
Bax2bam
Convert legacy PacBio Bax.H5, Bas.H5, and Ccs.H5 files to the new PacBio BAM format
Biceps
error-tolerant peptide identification
Bigsdb
Bacterial Isolate Genome Sequence Database
Bismark
bisulfite read mapper and methylation caller
Blat
BLAST-Like Alignment Tool
Blobology
tool set for the visualisation of genome assemblies
Braker
annotating protein coding genes in genomes.
Card-rgi
analysis of genome sequences using the Resistance Gene Identifier
Cellprofiler
quantitatively measure phenotypes from images automatically
Cinema
multi-sequence alignment editor and viewer
Condetri
straight-forward trimming of FASTQ sequences
Contrafold
CONditional TRAining for RNA Secondary Structure Prediction
Covpipe
pipeline to generate consensus sequences from NGS reads
Crossbow
Genotyping from short reads using cloud computing
Crux-toolkit
toolkit for tandem mass spectrometry analysis
Cytoscape
visualizing molecular interaction networks
Dazzle
Java-based DAS server
Deepbinner
demultiplexing barcoded Oxford Nanopore sequencing reads
Dendroscope
analyzing and visualizing rooted phylogenetic trees and networks
Diann
data-independent acquisition (DIA) proteomics data processing
Ecell
Concept and environment for constructing virtual cells on computers
Embassy-phylip
EMBOSS conversions of the programs in the phylip package
Ensembl
basic Ensembl genome browser
Ensembl-vep
Variant Effect Predictor predicting the functional effects of genomic variants
Euler-sr
correcting errors in short gene sequence reads and assembling them
Euler2
de novo repeat classification and fragment assembly
Exabayes
bayesian phylogenetic tree inference for large-scale analyses
Ffp
Feature Frequency Profile Phylogeny
Fieldbioinformatics
pipeline with virus identification with Nanopore sequencer
Flappie
flip-flop basecaller for Oxford Nanopore reads
Forester
Graphical vizualiation tool Archaeopteryx
Galaxy
scientific workflow and data integration platform for computational biology
Gatk
The Genome Analysis Toolkit
Gerp++
identifies constrained elements in multiple alignments
Gramalign
multiple alignment of biological sequences
Graphbin
refined binning of metagenomic contigs using assembly graphs
Graphmap2
highly sensitive and accurate mapper for long, error-prone reads
Haploview
Analysis and visualization of LD and haplotype maps
Hawkeye
Interactive Visual Analytics Tool for Genome Assemblies
Htqc
Quality control and filtration for illumina sequencing data
Idefix
index checking for improved demultiplexing of NGS data
Inspect
mass-spectrometry database search tool
Jbrowse
genome browser with an AJAX-based interface
Kempbasu
significance tests for comparing digital gene expression profiles
Mach-haplotyper
Markov Chain based SNP haplotyper
Mage2tab
MAGE-MLv1 converter and visualiser
Manta
structural variant and indel caller for mapped sequencing data
Marginphase
simultaneous haplotyping and genotyping
Martj
distributed data integration system for biological data
Medaka
sequence correction provided by ONT Research
Meme
search for common motifs in DNA or protein sequences
Mesquite
modular system for evolutionary analysis
Metabit
analysing microbial profiles from high-throughput sequencing shotgun data
Modeller
Protein structure modeling by satisfaction of spatial restraints
Molekel
Advanced Interactive 3D-Graphics for Molecular Sciences
Mosaik-aligner
reference-guided aligner for next-generation sequencing
Mpsqed
alignment editor and multiplex pyrosequencing assay designer
Mrs
Information Retrieval System for Biomedical databanks
Mugsy
multiple whole genome alignment tool
Mview
biological sequence alignment conversion
Nano-snakemake
detection of structural variants in genome sequencing data
Nanocall
Basecaller for Oxford Nanopore Sequencing Data
Nanocomp
compare multiple runs of long biological sequences
Nanoplot
plotting scripts for long read sequencing data
Ncbi-magicblast
RNA-seq mapping tool
Nextsv
automated structural variation detection for long-read sequencing
Ngila
global pairwise alignments with logarithmic and affine gap costs
Ngsqctoolkit
toolkit for the quality control of next generation sequencing data
Nw-align
global protein sequence alignment
Oases
de novo transcriptome assembler for very short reads
Omegamap
describing selection and recombination in sequences
Oncofuse
predicting oncogenic potential of gene fusions
Optitype
precision HLA typing from next-generation sequencing data
Paipline
Pipeline for the Automatic Identification of Pathogens
Pangolin
Phylogenetic Assignment of Named Global Outbreak LINeages
Partitionfinder
choses partitioning schemes and models of molecular evolution for sequence data
Patristic
Calculate patristic distances and comparing the components of genetic change
Pcma
fast and accurate multiple sequence alignment based on profile consistency
Phylophlan
microbial Tree of Life using 400 universal proteins
Phyloviz-core
phylogenetic inference and data visualization for sequence based typing methods
Pigx-scrnaseq
pipeline for checkpointed and distributed scRNA-seq analyses
Pipasic
Protein Abundance Correction in Metaproteomic Data
Plato
Analysis, translation, and organization of large-scale genetic data
Pomoxis
analysis components from Oxford Nanopore Research
Profit
Protein structure alignment
Profphd
secondary structure and solvent accessibility predictor
Psipred
protein secondary structure prediction
Pssh2
set of scripts for mapping protein sequence to structure
Pufferfish
Efficient index for the colored, compacted, de Bruijn graph
Purple
Picking Unique Relevant Peptides for viraL Experiments
Q2-composition
QIIME2 plugin for Compositional statistics
Q2-deblur
QIIME2 plugin to wrap the Deblur software for sequence quality control
Q2-diversity
QIIME2 plugin for core diversity analysis
Q2-gneiss
QIIME2 plugin for Compositional Data Analysis and Visualization
Q2-longitudinal
QIIME2 plugin for longitudinal studies and paired comparisons
Q2-vsearch
QIIME 2 plugin for clustering and dereplicating with vsearch
Qtlreaper
QTL analysis for expression data
Qualimap
evaluating next generation sequencing alignment data
Quast
Quality Assessment Tool for Genome Assemblies
R-bioc-org.mm.eg.db
genome wide annotation for Mouse
R-cran-drinsight
drug repurposing on transcriptome sequencing data
R-other-apmswapp
GNU R Pre- and Postprocessing For Affinity Purification Mass Spectrometry
R-other-fastbaps
A fast genetic clustering algorithm that approximates a Dirichlet Process Mixture model
Raxml-ng
phylogenetic tree inference tool which uses maximum-likelihood
Repeatmasker
screen DNA sequences for interspersed repeats
Roadtrips
case-control association testing with unknown population and pedigree structure
Rosa
Removal of Spurious Antisense in biological RNA sequences
Rsat
Regulatory Sequence Analysis Tools
Sailfish
RNA-seq expression estimation
Sap
Pairwise protein structure alignment via double dynamic programming
Seq-seq-pan
workflow for the SEQuential alignment of SEQuences
Seqwish
alignment to variation graph inducer
Signalalign
HMM-HDP models for MinION signal alignments
Sina
reference based multiple sequence alignment
Sistr
Salmonella In Silico Typing Resource (SISTR)
Situs
Modeling of atomic resolution structures into low-resolution density maps
Sparta
automated reference-based bacterial RNA-seq Transcriptome Analysis
Ssaha
Sequence Search and Alignment by Hashing Algorithm
Strap
Comfortable and intuitive protein alignment editor / viewer
Strap-base
essential files for the interactive alignment viewer and editor Strap
Strelka
strelka2 germline and somatic small variant caller
Tab2mage
submitting large microarray experiment datasets to public repository database
Tacg
command line program for finding patterns in nucleic acids
Tandem-genotypes
compare lengths of duplications in DNA sequences
Tide
SEQUEST Searching for Peptide Identification from Tandem Mass Spectra
Tigr-glimmer-mg
finding genes in environmental shotgun DNA sequences
Tn-seqexplorer
explore and analyze Tn-seq data for prokaryotic genomes
Tophat
fast splice junction mapper for RNA-Seq reads
Ufasta
utility to manipulate fasta files
Umap
quantify genome and methylome mappability
Unc-fish
Fast Identification of Segmental Homology
Varmatch
robust matching of small genomic variant datasets
Viewmol
graphical front end for computational chemistry programs
Vmd
presentation of traces of molecular dynamics runs
Zodiac-zeden
ZODIAC - Zeden's Organise DIsplay And Compute

Unofficial packages built by somebody else

Big-blast
Helper tool to run blast on large sequences
Estferret
processes, clusters and annotates EST data
Maxd
data warehouse and visualisation environment for genomic expression data
Migrate
estimation of population sizes and gene flow using the coalescent
Msatfinder
identification and characterization of microsatellites in a comparative genomic context
Oligoarrayaux
Prediction of Melting Profiles for Nucleic Acids
Partigene
generating partial gemomes
Pfaat
Protein Family Alignment Annotation Tool
Prot4est
EST protein translation suite
Python3-orange
Data mining framework
Qtlcart
map quantitative traits using a map of molecular markers
Rbs-finder
find ribosome binding sites(RBS)
Roche454ace2caf
convert GS20 or FLX assemblies into CAF format
Splitstree
Analyzing and Visualizing Evolutionary Data
Taverna
designing and executing myGrid workflows for bioinformatics
Taxinspector
browser for entries in the NCBI taxonomy
Tetra
tetranucleotide frequency calculator

No known packages available but some record of interest (WNPP bug)

Btk-core
biomolecule Toolkit C++ library
Mirbase
The microRNA sequence database
Phylowin
Graphical interface for molecular phylogenetic inference

No known packages available

Amoscmp
comparative genome assembly package
Annovar
annotate genetic variants detected from diverse genomes
Arachne
toolkit for Whole Genome Shotgun Assembly
Asap
organize the data associated with a genome
Bambus
hierarchical approach to building contig scaffolds
Cactus
Cdna-db
quality-control checking of finished cDNA clone sequences
Cmap
view comparisons of genetic and physical maps
Contralign
parameter learning framework for protein pairwise sequence alignment
Copycat
fast access to cophylogenetic analyses
E-hive
distributed processing system based on 'autonomous agents'
Exalt
phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Excavator
gene expression data clustering
Figaro
novel vector trimming software
Forge
genome assembler for mixed read types
Genemark
family of gene prediction programs
Genesplicer
computational method for splice site prediction
Genetrack
genomic data storage and visualization framework
Genezilla
eukaryotic gene finder
Genographer
read data and reconstruct them into a gel image
Glimmerhmm
Eukaryotic Gene-Finding System
Gmv
comparative genome browser for Murasaki
Jigsaw
gene prediction using multiple sources of evidence
Maker2
annotate genomes and create genome databases
Metarep
JCVI Metagenomics Reports
Minimus
AMOS lightweight assembler
Mummergpu
High-throughput sequence alignment using Graphics Processing Units
Obo-edit
editor for biological ontologies
Operondb
detect and analyze conserved gene pairs
Phagefinder
heuristic computer program to identify prophage regions within bacterial genomes
Phpphylotree
draw phylogenetic trees
Phylographer
Graph Visualization Tool
Pyrophosphate-tools
for assembling and searching pyrophosphate sequence data
Rose
Region-Of-Synteny Extractor
Treebuilder3d
viewer of SAGE and other types of gene expression data
Tripal
collection of Drupal modules for genomic research
Twain
syntenic genefinder employing a Generalized Pair Hidden Markov Model
Uniprime
workflow-based platform for universal primer design
X-tandem-pipeline
peptide/protein identification from MS/MS mass spectra

Biology development - Debian Med packages for development of bioinformatics applications

This metapackage will install Debian packages which might be helpful for development of applications for biological research.

Official Debian packages with high relevance

Bio-tradis
??? missing short description for package bio-tradis :-(
Biobambam2
??? missing short description for package biobambam2 :-(
Bioperl
??? missing short description for package bioperl :-(
Bioperl-run
??? missing short description for package bioperl-run :-(
Biosquid
??? missing short description for package biosquid :-(
Cwltool
??? missing short description for package cwltool :-(
Gffread
??? missing short description for package gffread :-(
Goby-java
??? missing short description for package goby-java :-(
Libace-perl
??? missing short description for package libace-perl :-(
Libai-fann-perl
??? missing short description for package libai-fann-perl :-(
Libbambamc-dev
??? missing short description for package libbambamc-dev :-(
Libbamtools-dev
??? missing short description for package libbamtools-dev :-(
Libbigwig-dev
??? missing short description for package libbigwig-dev :-(
Libbio-alignio-stockholm-perl
??? missing short description for package libbio-alignio-stockholm-perl :-(
Libbio-asn1-entrezgene-perl
??? missing short description for package libbio-asn1-entrezgene-perl :-(
Libbio-chado-schema-perl
??? missing short description for package libbio-chado-schema-perl :-(
Libbio-cluster-perl
??? missing short description for package libbio-cluster-perl :-(
Libbio-coordinate-perl
??? missing short description for package libbio-coordinate-perl :-(
Libbio-das-lite-perl
??? missing short description for package libbio-das-lite-perl :-(
Libbio-db-biofetch-perl
??? missing short description for package libbio-db-biofetch-perl :-(
Libbio-db-embl-perl
??? missing short description for package libbio-db-embl-perl :-(
Libbio-db-hts-perl
??? missing short description for package libbio-db-hts-perl :-(
Libbio-db-ncbihelper-perl
??? missing short description for package libbio-db-ncbihelper-perl :-(
Libbio-db-seqfeature-perl
??? missing short description for package libbio-db-seqfeature-perl :-(
Libbio-eutilities-perl
??? missing short description for package libbio-eutilities-perl :-(
Libbio-featureio-perl
??? missing short description for package libbio-featureio-perl :-(
Libbio-graphics-perl
??? missing short description for package libbio-graphics-perl :-(
Libbio-mage-perl
??? missing short description for package libbio-mage-perl :-(
Libbio-mage-utils-perl
??? missing short description for package libbio-mage-utils-perl :-(
Libbio-primerdesigner-perl
??? missing short description for package libbio-primerdesigner-perl :-(
Libbio-samtools-perl
??? missing short description for package libbio-samtools-perl :-(
Libbio-scf-perl
??? missing short description for package libbio-scf-perl :-(
Libbio-tools-phylo-paml-perl
??? missing short description for package libbio-tools-phylo-paml-perl :-(
Libbio-tools-run-alignment-clustalw-perl
??? missing short description for package libbio-tools-run-alignment-clustalw-perl :-(
Libbio-tools-run-alignment-tcoffee-perl
??? missing short description for package libbio-tools-run-alignment-tcoffee-perl :-(
Libbio-tools-run-remoteblast-perl
??? missing short description for package libbio-tools-run-remoteblast-perl :-(
Libbio-variation-perl
??? missing short description for package libbio-variation-perl :-(
Libbiojava-java
??? missing short description for package libbiojava-java :-(
Libbiojava6-java
??? missing short description for package libbiojava6-java :-(
Libbioparser-dev
??? missing short description for package libbioparser-dev :-(
Libblasr-dev
??? missing short description for package libblasr-dev :-(
Libbpp-core-dev
??? missing short description for package libbpp-core-dev :-(
Libbpp-phyl-dev
??? missing short description for package libbpp-phyl-dev :-(
Libbpp-phyl-omics-dev
??? missing short description for package libbpp-phyl-omics-dev :-(
Libbpp-popgen-dev
??? missing short description for package libbpp-popgen-dev :-(
Libbpp-qt-dev
??? missing short description for package libbpp-qt-dev :-(
Libbpp-raa-dev
??? missing short description for package libbpp-raa-dev :-(
Libbpp-seq-dev
??? missing short description for package libbpp-seq-dev :-(
Libbpp-seq-omics-dev
??? missing short description for package libbpp-seq-omics-dev :-(
Libcdk-java
??? missing short description for package libcdk-java :-(
Libchado-perl
??? missing short description for package libchado-perl :-(
Libcifpp-dev
??? missing short description for package libcifpp-dev :-(
Libconsensuscore-dev
??? missing short description for package libconsensuscore-dev :-(
Libdivsufsort-dev
??? missing short description for package libdivsufsort-dev :-(
Libedlib-dev
??? missing short description for package libedlib-dev :-(
Libfast5-dev
??? missing short description for package libfast5-dev :-(
Libfastahack-dev
??? missing short description for package libfastahack-dev :-(
Libffindex0-dev
??? missing short description for package libffindex0-dev :-(
Libfml-dev
??? missing short description for package libfml-dev :-(
Libgatbcore-dev
??? missing short description for package libgatbcore-dev :-(
Libgclib-dev
??? missing short description for package libgclib-dev :-(
Libgenome-dev
??? missing short description for package libgenome-dev :-(
Libgenome-model-tools-music-perl
??? missing short description for package libgenome-model-tools-music-perl :-(
Libgenome-perl
??? missing short description for package libgenome-perl :-(
Libgenometools0-dev
??? missing short description for package libgenometools0-dev :-(
Libgff-dev
??? missing short description for package libgff-dev :-(
Libgkarrays-dev
??? missing short description for package libgkarrays-dev :-(
Libgo-perl
??? missing short description for package libgo-perl :-(
Libhdf5-dev
??? missing short description for package libhdf5-dev :-(
Libhmsbeagle-dev
??? missing short description for package libhmsbeagle-dev :-(
Libhts-dev
??? missing short description for package libhts-dev :-(
Libhtscodecs-dev
??? missing short description for package libhtscodecs-dev :-(
Libhtsjdk-java
??? missing short description for package libhtsjdk-java :-(
Libjebl2-java
??? missing short description for package libjebl2-java :-(
Libjloda-java
??? missing short description for package libjloda-java :-(
Libkmer-dev
??? missing short description for package libkmer-dev :-(
Libmems-dev
??? missing short description for package libmems-dev :-(
Libminimap2-dev
??? missing short description for package libminimap2-dev :-(
Libmmblib-dev
??? missing short description for package libmmblib-dev :-(
Libmuscle-dev
??? missing short description for package libmuscle-dev :-(
Libncbi-vdb-dev
??? missing short description for package libncbi-vdb-dev :-(
Libncbi6-dev
??? missing short description for package libncbi6-dev :-(
Libncl-dev
??? missing short description for package libncl-dev :-(
Libngs-java
??? missing short description for package libngs-java :-(
Libngs-sdk-dev
??? missing short description for package libngs-sdk-dev :-(
Libnhgri-blastall-perl
??? missing short description for package libnhgri-blastall-perl :-(
Libopenmm-dev
??? missing short description for package libopenmm-dev :-(
Libopenms-dev
??? missing short description for package libopenms-dev :-(
Libpal-java
??? missing short description for package libpal-java :-(
Libparasail-dev
??? missing short description for package libparasail-dev :-(
Libpbbam-dev
??? missing short description for package libpbbam-dev :-(
Libpbdata-dev
??? missing short description for package libpbdata-dev :-(
Libpbihdf-dev
??? missing short description for package libpbihdf-dev :-(
Libpbseq-dev
??? missing short description for package libpbseq-dev :-(
Libpdb-redo-dev
??? missing short description for package libpdb-redo-dev :-(
Libpll-dev
??? missing short description for package libpll-dev :-(
Libpwiz-dev
??? missing short description for package libpwiz-dev :-(
Libqes-dev
??? missing short description for package libqes-dev :-(
Librcsb-core-wrapper0-dev
??? missing short description for package librcsb-core-wrapper0-dev :-(
Librdp-taxonomy-tree-java
??? missing short description for package librdp-taxonomy-tree-java :-(
Librg-blast-parser-perl
??? missing short description for package librg-blast-parser-perl :-(
Librg-reprof-bundle-perl
??? missing short description for package librg-reprof-bundle-perl :-(
Librostlab-blast0-dev
??? missing short description for package librostlab-blast0-dev :-(
Librostlab3-dev
??? missing short description for package librostlab3-dev :-(
Libsbml5-dev
??? missing short description for package libsbml5-dev :-(
Libseqan2-dev
??? missing short description for package libseqan2-dev :-(
Libseqan3-dev
??? missing short description for package libseqan3-dev :-(
Libseqlib-dev
??? missing short description for package libseqlib-dev :-(
Libslow5-dev
??? missing short description for package libslow5-dev :-(
Libsmithwaterman-dev
??? missing short description for package libsmithwaterman-dev :-(
Libsnp-sites1-dev
??? missing short description for package libsnp-sites1-dev :-(
Libsort-key-top-perl
??? missing short description for package libsort-key-top-perl :-(
Libspoa-dev
??? missing short description for package libspoa-dev :-(
Libsrf-dev
??? missing short description for package libsrf-dev :-(
Libssm-dev
??? missing short description for package libssm-dev :-(
Libssu-dev
??? missing short description for package libssu-dev :-(
Libssw-dev
??? missing short description for package libssw-dev :-(
Libssw-java
??? missing short description for package libssw-java :-(
Libstaden-read-dev
??? missing short description for package libstaden-read-dev :-(
Libstatgen-dev
??? missing short description for package libstatgen-dev :-(
Libswiss-perl
??? missing short description for package libswiss-perl :-(
Libtabixpp-dev
??? missing short description for package libtabixpp-dev :-(
Libthread-pool-dev
??? missing short description for package libthread-pool-dev :-(
Libvcflib-dev
??? missing short description for package libvcflib-dev :-(
Libvibrant6-dev
??? missing short description for package libvibrant6-dev :-(
Libwfa2-dev
??? missing short description for package libwfa2-dev :-(
Libzerg-perl
??? missing short description for package libzerg-perl :-(
Libzerg0-dev
??? missing short description for package libzerg0-dev :-(
Mcl
??? missing short description for package mcl :-(
Nim-hts-dev
??? missing short description for package nim-hts-dev :-(
Nim-kexpr-dev
??? missing short description for package nim-kexpr-dev :-(
Nim-lapper-dev
??? missing short description for package nim-lapper-dev :-(
Ont-fast5-api
??? missing short description for package ont-fast5-api :-(
Pyfai
??? missing short description for package pyfai :-(
Python3-airr
??? missing short description for package python3-airr :-(
Python3-anndata
??? missing short description for package python3-anndata :-(
Python3-bioframe
??? missing short description for package python3-bioframe :-(
Python3-biom-format
??? missing short description for package python3-biom-format :-(
Python3-biomaj3
??? missing short description for package python3-biomaj3 :-(
Python3-biopython
??? missing short description for package python3-biopython :-(
Python3-biotools
??? missing short description for package python3-biotools :-(
Python3-bx
??? missing short description for package python3-bx :-(
Python3-cgecore
??? missing short description for package python3-cgecore :-(
Python3-cigar
??? missing short description for package python3-cigar :-(
Python3-cobra
??? missing short description for package python3-cobra :-(
Python3-cogent3
??? missing short description for package python3-cogent3 :-(
Python3-cooler
??? missing short description for package python3-cooler :-(
Python3-corepywrap
??? missing short description for package python3-corepywrap :-(
Python3-csb
??? missing short description for package python3-csb :-(
Python3-cutadapt
??? missing short description for package python3-cutadapt :-(
Python3-cyvcf2
??? missing short description for package python3-cyvcf2 :-(
Python3-deeptools
??? missing short description for package python3-deeptools :-(
Python3-deeptoolsintervals
??? missing short description for package python3-deeptoolsintervals :-(
Python3-dendropy
??? missing short description for package python3-dendropy :-(
Python3-dnaio
??? missing short description for package python3-dnaio :-(
Python3-ete3
??? missing short description for package python3-ete3 :-(
Python3-fast5
??? missing short description for package python3-fast5 :-(
Python3-freecontact
??? missing short description for package python3-freecontact :-(
Python3-gfapy
??? missing short description for package python3-gfapy :-(
Python3-gffutils
??? missing short description for package python3-gffutils :-(
Python3-gtfparse
??? missing short description for package python3-gtfparse :-(
Python3-htseq
??? missing short description for package python3-htseq :-(
Python3-intervaltree-bio
??? missing short description for package python3-intervaltree-bio :-(
Python3-kineticstools
??? missing short description for package python3-kineticstools :-(
Python3-loompy
??? missing short description for package python3-loompy :-(
Python3-mirtop
??? missing short description for package python3-mirtop :-(
Python3-nanoget
??? missing short description for package python3-nanoget :-(
Python3-ngs
??? missing short description for package python3-ngs :-(
Python3-pairix
??? missing short description for package python3-pairix :-(
Python3-pangolearn
??? missing short description for package python3-pangolearn :-(
Python3-parasail
??? missing short description for package python3-parasail :-(
Python3-pbcommand
??? missing short description for package python3-pbcommand :-(
Python3-pbconsensuscore
??? missing short description for package python3-pbconsensuscore :-(
Python3-pbcore
??? missing short description for package python3-pbcore :-(
Python3-peptidebuilder
??? missing short description for package python3-peptidebuilder :-(
Python3-presto
??? missing short description for package python3-presto :-(
Python3-propka
??? missing short description for package python3-propka :-(
Python3-py2bit
??? missing short description for package python3-py2bit :-(
Python3-pyabpoa
??? missing short description for package python3-pyabpoa :-(
Python3-pyani
??? missing short description for package python3-pyani :-(
Python3-pybedtools
??? missing short description for package python3-pybedtools :-(
Python3-pybel
??? missing short description for package python3-pybel :-(
Python3-pybigwig
??? missing short description for package python3-pybigwig :-(
Python3-pyfaidx
??? missing short description for package python3-pyfaidx :-(
Python3-pyfastx
??? missing short description for package python3-pyfastx :-(
Python3-pymummer
??? missing short description for package python3-pymummer :-(
Python3-pyranges
??? missing short description for package python3-pyranges :-(
Python3-pysam
??? missing short description for package python3-pysam :-(
Python3-pyspoa
??? missing short description for package python3-pyspoa :-(
Python3-rdkit
??? missing short description for package python3-rdkit :-(
Python3-ruffus
??? missing short description for package python3-ruffus :-(
Python3-screed
??? missing short description for package python3-screed :-(
Python3-shasta
??? missing short description for package python3-shasta :-(
Python3-skbio
??? missing short description for package python3-skbio :-(
Python3-slow5
??? missing short description for package python3-slow5 :-(
Python3-sqt
??? missing short description for package python3-sqt :-(
Python3-streamz
??? missing short description for package python3-streamz :-(
Python3-tinyalign
??? missing short description for package python3-tinyalign :-(
Python3-torch
??? missing short description for package python3-torch :-(
Python3-treetime
??? missing short description for package python3-treetime :-(
Python3-unifrac
??? missing short description for package python3-unifrac :-(
Python3-wdlparse
??? missing short description for package python3-wdlparse :-(
R-bioc-biobase
??? missing short description for package r-bioc-biobase :-(
R-cran-boolnet
??? missing short description for package r-cran-boolnet :-(
R-cran-corrplot
??? missing short description for package r-cran-corrplot :-(
R-cran-distory
??? missing short description for package r-cran-distory :-(
R-cran-fitdistrplus
??? missing short description for package r-cran-fitdistrplus :-(
R-cran-forecast
??? missing short description for package r-cran-forecast :-(
R-cran-genetics
??? missing short description for package r-cran-genetics :-(
R-cran-gprofiler2
??? missing short description for package r-cran-gprofiler2 :-(
R-cran-haplo.stats
??? missing short description for package r-cran-haplo.stats :-(
R-cran-phangorn
??? missing short description for package r-cran-phangorn :-(
R-cran-pheatmap
??? missing short description for package r-cran-pheatmap :-(
R-cran-phylobase
??? missing short description for package r-cran-phylobase :-(
R-cran-pscbs
??? missing short description for package r-cran-pscbs :-(
R-cran-qqman
??? missing short description for package r-cran-qqman :-(
R-cran-rentrez
??? missing short description for package r-cran-rentrez :-(
R-cran-rncl
??? missing short description for package r-cran-rncl :-(
R-cran-rnexml
??? missing short description for package r-cran-rnexml :-(
R-cran-rotl
??? missing short description for package r-cran-rotl :-(
R-cran-samr
??? missing short description for package r-cran-samr :-(
R-cran-sctransform
??? missing short description for package r-cran-sctransform :-(
R-cran-seqinr
??? missing short description for package r-cran-seqinr :-(
R-cran-seurat
??? missing short description for package r-cran-seurat :-(
R-cran-tsne
??? missing short description for package r-cran-tsne :-(
R-cran-vegan
??? missing short description for package r-cran-vegan :-(
R-cran-webgestaltr
??? missing short description for package r-cran-webgestaltr :-(
Ruby-bio
??? missing short description for package ruby-bio :-(
Ruby-crb-blast
??? missing short description for package ruby-crb-blast :-(
Sbmltoolbox
??? missing short description for package sbmltoolbox :-(
Snakemake
??? missing short description for package snakemake :-(
Toil
??? missing short description for package toil :-(

Official Debian packages with lower relevance

Capsule-nextflow
??? missing short description for package capsule-nextflow :-(
Conda-package-handling
??? missing short description for package conda-package-handling :-(
Ctdconverter
??? missing short description for package ctdconverter :-(
Cthreadpool-dev
??? missing short description for package cthreadpool-dev :-(
Cwlformat
??? missing short description for package cwlformat :-(
Cwltest
??? missing short description for package cwltest :-(
Libargs-dev
??? missing short description for package libargs-dev :-(
Libbam-dev
??? missing short description for package libbam-dev :-(
Libbbhash-dev
??? missing short description for package libbbhash-dev :-(
Libbifrost-dev
??? missing short description for package libbifrost-dev :-(
Libbiojava4-java
??? missing short description for package libbiojava4-java :-(
Libbiosoup-dev
??? missing short description for package libbiosoup-dev :-(
Libbtllib-dev
??? missing short description for package libbtllib-dev :-(
Libcapsule-maven-nextflow-java
??? missing short description for package libcapsule-maven-nextflow-java :-(
Libconcurrentqueue-dev
??? missing short description for package libconcurrentqueue-dev :-(
Libdisorder-dev
??? missing short description for package libdisorder-dev :-(
Libfreecontact-dev
??? missing short description for package libfreecontact-dev :-(
Libfreecontact-doc
??? missing short description for package libfreecontact-doc :-(
Libfreecontact-perl
??? missing short description for package libfreecontact-perl :-(
Libgatk-bwamem-java
??? missing short description for package libgatk-bwamem-java :-(
Libgatk-bwamem-jni
??? missing short description for package libgatk-bwamem-jni :-(
Libgatk-fermilite-java
??? missing short description for package libgatk-fermilite-java :-(
Libgatk-fermilite-jni
??? missing short description for package libgatk-fermilite-jni :-(
Libgatk-native-bindings-java
??? missing short description for package libgatk-native-bindings-java :-(
Libgenomicsdb-dev
??? missing short description for package libgenomicsdb-dev :-(
Libgenomicsdb-java
??? missing short description for package libgenomicsdb-java :-(
Libicb-utils-java
??? missing short description for package libicb-utils-java :-(
Libmaus2-dev
??? missing short description for package libmaus2-dev :-(
Libmilib-java
??? missing short description for package libmilib-java :-(
Libminimap-dev
??? missing short description for package libminimap-dev :-(
Libmodhmm-dev
??? missing short description for package libmodhmm-dev :-(
Libpbcopper-dev
??? missing short description for package libpbcopper-dev :-(
Librostlab-blast-doc
??? missing short description for package librostlab-blast-doc :-(
Librostlab-doc
??? missing short description for package librostlab-doc :-(
Libsavvy-dev
??? missing short description for package libsavvy-dev :-(
Libsuma-dev
??? missing short description for package libsuma-dev :-(
Libsvmloc-dev
??? missing short description for package libsvmloc-dev :-(
Libterraces-dev
??? missing short description for package libterraces-dev :-(
Libtfbs-perl
??? missing short description for package libtfbs-perl :-(
Libvbz-hdf-plugin-dev
??? missing short description for package libvbz-hdf-plugin-dev :-(
Libxxsds-dynamic-dev
??? missing short description for package libxxsds-dynamic-dev :-(
Python-biopython-doc
??? missing short description for package python-biopython-doc :-(
Python3-bel-resources
??? missing short description for package python3-bel-resources :-(
Python3-bioblend
??? missing short description for package python3-bioblend :-(
Python3-biopython-sql
??? missing short description for package python3-biopython-sql :-(
Python3-cgelib
??? missing short description for package python3-cgelib :-(
Python3-conda-package-streaming
??? missing short description for package python3-conda-package-streaming :-(
Python3-ctdopts
??? missing short description for package python3-ctdopts :-(
Python3-intake
??? missing short description for package python3-intake :-(
Python3-joypy
??? missing short description for package python3-joypy :-(
Python3-ncls
??? missing short description for package python3-ncls :-(
Python3-networkx
??? missing short description for package python3-networkx :-(
Python3-pycosat
??? missing short description for package python3-pycosat :-(
Python3-pyflow
??? missing short description for package python3-pyflow :-(
Q2-alignment
??? missing short description for package q2-alignment :-(
Q2-cutadapt
??? missing short description for package q2-cutadapt :-(
Q2-dada2
??? missing short description for package q2-dada2 :-(
Q2-demux
??? missing short description for package q2-demux :-(
Q2-emperor
??? missing short description for package q2-emperor :-(
Q2-feature-classifier
??? missing short description for package q2-feature-classifier :-(
Q2-feature-table
??? missing short description for package q2-feature-table :-(
Q2-fragment-insertion
??? missing short description for package q2-fragment-insertion :-(
Q2-metadata
??? missing short description for package q2-metadata :-(
Q2-phylogeny
??? missing short description for package q2-phylogeny :-(
Q2-quality-control
??? missing short description for package q2-quality-control :-(
Q2-quality-filter
??? missing short description for package q2-quality-filter :-(
Q2-sample-classifier
??? missing short description for package q2-sample-classifier :-(
Q2-taxa
??? missing short description for package q2-taxa :-(
Q2-types
??? missing short description for package q2-types :-(
Q2cli
??? missing short description for package q2cli :-(
Q2templates
??? missing short description for package q2templates :-(
Qiime
??? missing short description for package qiime :-(
R-bioc-affxparser
??? missing short description for package r-bioc-affxparser :-(
R-bioc-affy
??? missing short description for package r-bioc-affy :-(
R-bioc-affyio
??? missing short description for package r-bioc-affyio :-(
R-bioc-altcdfenvs
??? missing short description for package r-bioc-altcdfenvs :-(
R-bioc-annotate
??? missing short description for package r-bioc-annotate :-(
R-bioc-annotationdbi
??? missing short description for package r-bioc-annotationdbi :-(
R-bioc-annotationhub
??? missing short description for package r-bioc-annotationhub :-(
R-bioc-aroma.light
??? missing short description for package r-bioc-aroma.light :-(
R-bioc-arrayexpress
??? missing short description for package r-bioc-arrayexpress :-(
R-bioc-biocgenerics
??? missing short description for package r-bioc-biocgenerics :-(
R-bioc-biocneighbors
??? missing short description for package r-bioc-biocneighbors :-(
R-bioc-biomart
??? missing short description for package r-bioc-biomart :-(
R-bioc-biomformat
??? missing short description for package r-bioc-biomformat :-(
R-bioc-biostrings
??? missing short description for package r-bioc-biostrings :-(
R-bioc-biovizbase
??? missing short description for package r-bioc-biovizbase :-(
R-bioc-bitseq
??? missing short description for package r-bioc-bitseq :-(
R-bioc-bsgenome
??? missing short description for package r-bioc-bsgenome :-(
R-bioc-cner
??? missing short description for package r-bioc-cner :-(
R-bioc-complexheatmap
??? missing short description for package r-bioc-complexheatmap :-(
R-bioc-ctc
??? missing short description for package r-bioc-ctc :-(
R-bioc-cummerbund
??? missing short description for package r-bioc-cummerbund :-(
R-bioc-dada2
??? missing short description for package r-bioc-dada2 :-(
R-bioc-deseq2
??? missing short description for package r-bioc-deseq2 :-(
R-bioc-dnacopy
??? missing short description for package r-bioc-dnacopy :-(
R-bioc-ebseq
??? missing short description for package r-bioc-ebseq :-(
R-bioc-ensembldb
??? missing short description for package r-bioc-ensembldb :-(
R-bioc-genefilter
??? missing short description for package r-bioc-genefilter :-(
R-bioc-geneplotter
??? missing short description for package r-bioc-geneplotter :-(
R-bioc-genomeinfodb
??? missing short description for package r-bioc-genomeinfodb :-(
R-bioc-genomicalignments
??? missing short description for package r-bioc-genomicalignments :-(
R-bioc-genomicfeatures
??? missing short description for package r-bioc-genomicfeatures :-(
R-bioc-genomicranges
??? missing short description for package r-bioc-genomicranges :-(
R-bioc-geoquery
??? missing short description for package r-bioc-geoquery :-(
R-bioc-go.db
??? missing short description for package r-bioc-go.db :-(
R-bioc-graph
??? missing short description for package r-bioc-graph :-(
R-bioc-gseabase
??? missing short description for package r-bioc-gseabase :-(
R-bioc-gsva
??? missing short description for package r-bioc-gsva :-(
R-bioc-gviz
??? missing short description for package r-bioc-gviz :-(
R-bioc-hypergraph
??? missing short description for package r-bioc-hypergraph :-(
R-bioc-impute
??? missing short description for package r-bioc-impute :-(
R-bioc-iranges
??? missing short description for package r-bioc-iranges :-(
R-bioc-limma
??? missing short description for package r-bioc-limma :-(
R-bioc-makecdfenv
??? missing short description for package r-bioc-makecdfenv :-(
R-bioc-mergeomics
??? missing short description for package r-bioc-mergeomics :-(
R-bioc-metagenomeseq
??? missing short description for package r-bioc-metagenomeseq :-(
R-bioc-mofa
??? missing short description for package r-bioc-mofa :-(
R-bioc-multiassayexperiment
??? missing short description for package r-bioc-multiassayexperiment :-(
R-bioc-nanostringqcpro
??? missing short description for package r-bioc-nanostringqcpro :-(
R-bioc-oligo
??? missing short description for package r-bioc-oligo :-(
R-bioc-oligoclasses
??? missing short description for package r-bioc-oligoclasses :-(
R-bioc-org.hs.eg.db
??? missing short description for package r-bioc-org.hs.eg.db :-(
R-bioc-pcamethods
??? missing short description for package r-bioc-pcamethods :-(
R-bioc-phyloseq
??? missing short description for package r-bioc-phyloseq :-(
R-bioc-preprocesscore
??? missing short description for package r-bioc-preprocesscore :-(
R-bioc-purecn
??? missing short description for package r-bioc-purecn :-(
R-bioc-qusage
??? missing short description for package r-bioc-qusage :-(
R-bioc-rbgl
??? missing short description for package r-bioc-rbgl :-(
R-bioc-rsamtools
??? missing short description for package r-bioc-rsamtools :-(
R-bioc-rtracklayer
??? missing short description for package r-bioc-rtracklayer :-(
R-bioc-s4vectors
??? missing short description for package r-bioc-s4vectors :-(
R-bioc-savr
??? missing short description for package r-bioc-savr :-(
R-bioc-shortread
??? missing short description for package r-bioc-shortread :-(
R-bioc-snpstats
??? missing short description for package r-bioc-snpstats :-(
R-bioc-structuralvariantannotation
??? missing short description for package r-bioc-structuralvariantannotation :-(
R-bioc-tfbstools
??? missing short description for package r-bioc-tfbstools :-(
R-bioc-tximport
??? missing short description for package r-bioc-tximport :-(
R-bioc-variantannotation
??? missing short description for package r-bioc-variantannotation :-(
R-bioc-xvector
??? missing short description for package r-bioc-xvector :-(
R-cran-adegenet
??? missing short description for package r-cran-adegenet :-(
R-cran-adephylo
??? missing short description for package r-cran-adephylo :-(
R-cran-amap
??? missing short description for package r-cran-amap :-(
R-cran-biwt
??? missing short description for package r-cran-biwt :-(
R-cran-dt
??? missing short description for package r-cran-dt :-(
R-cran-dynamictreecut
??? missing short description for package r-cran-dynamictreecut :-(
R-cran-fastcluster
??? missing short description for package r-cran-fastcluster :-(
R-cran-future.apply
??? missing short description for package r-cran-future.apply :-(
R-cran-future.batchtools
??? missing short description for package r-cran-future.batchtools :-(
R-cran-ica
??? missing short description for package r-cran-ica :-(
R-cran-itertools
??? missing short description for package r-cran-itertools :-(
R-cran-kaos
??? missing short description for package r-cran-kaos :-(
R-cran-metap
??? missing short description for package r-cran-metap :-(
R-cran-minerva
??? missing short description for package r-cran-minerva :-(
R-cran-natserv
??? missing short description for package r-cran-natserv :-(
R-cran-nmf
??? missing short description for package r-cran-nmf :-(
R-cran-optimalcutpoints
??? missing short description for package r-cran-optimalcutpoints :-(
R-cran-parmigene
??? missing short description for package r-cran-parmigene :-(
R-cran-pcapp
??? missing short description for package r-cran-pcapp :-(
R-cran-proc
??? missing short description for package r-cran-proc :-(
R-cran-rann
??? missing short description for package r-cran-rann :-(
R-cran-rcpphnsw
??? missing short description for package r-cran-rcpphnsw :-(
R-cran-robustrankaggreg
??? missing short description for package r-cran-robustrankaggreg :-(
R-cran-rocr
??? missing short description for package r-cran-rocr :-(
R-cran-rook
??? missing short description for package r-cran-rook :-(
R-cran-rsvd
??? missing short description for package r-cran-rsvd :-(
R-cran-shazam
??? missing short description for package r-cran-shazam :-(
R-cran-sitmo
??? missing short description for package r-cran-sitmo :-(
R-cran-venndiagram
??? missing short description for package r-cran-venndiagram :-(
Ruby-rgfa
??? missing short description for package ruby-rgfa :-(

Debian packages in contrib or non-free

Python3-seqcluster
??? missing short description for package python3-seqcluster :-(
Vdjtools
??? missing short description for package vdjtools :-(

Packaging has started and developers might try the packaging code in VCS

Libatomicqueue-dev
devel files for C++ atomic_queue library
Libfast-perl
FAST Analysis of Sequences Toolbox
Libforester-java
Libraries for evolutionary biology and comparative genomics research
Libnexml-java
Java API for NeXML
Python3-compclust
explore and quantify relationships between clustering results
Python3-consensuscore2
generate consensus sequences for PacBio data -- Python3
Python3-galaxy-lib
Subset of Galaxy core code base designed to be used
Python3-misopy
Mixture of Isoforms model for RNA-Seq isoform quantitation (Python 3)
Python3-scanpy
Single-Cell Analysis in Python
Q2-composition
QIIME2 plugin for Compositional statistics
Q2-deblur
QIIME2 plugin to wrap the Deblur software for sequence quality control
Q2-diversity
QIIME2 plugin for core diversity analysis
Q2-gneiss
QIIME2 plugin for Compositional Data Analysis and Visualization
Q2-longitudinal
QIIME2 plugin for longitudinal studies and paired comparisons
Q2-vsearch
QIIME 2 plugin for clustering and dereplicating with vsearch
R-bioc-bridgedbr
identifier mapping between biological databases
R-cran-drinsight
drug repurposing on transcriptome sequencing data
R-other-apmswapp
GNU R Pre- and Postprocessing For Affinity Purification Mass Spectrometry

No known packages available

Bioclipse
platform for chemo- and bioinformatics based on Eclipse
Octace-bioinfo
Bioinformatics manipulation for Octave

Next generation sequencing - Debian Med bioinformatics applications usable in Next Generation Sequencing

It aims at gettting packages which specialize in the processing or interpretation of data generated with next- (and later-) generation high-thoughput sequencing technologies.

Official Debian packages with high relevance

Anfo
??? missing short description for package anfo :-(
Arden
??? missing short description for package arden :-(
Art-nextgen-simulation-tools
??? missing short description for package art-nextgen-simulation-tools :-(
Artfastqgenerator
??? missing short description for package artfastqgenerator :-(
Bamtools
??? missing short description for package bamtools :-(
Bcftools
??? missing short description for package bcftools :-(
Bedtools
??? missing short description for package bedtools :-(
Berkeley-express
??? missing short description for package berkeley-express :-(
Bio-rainbow
??? missing short description for package bio-rainbow :-(
Blasr
??? missing short description for package blasr :-(
Bowtie
??? missing short description for package bowtie :-(
Bowtie2
??? missing short description for package bowtie2 :-(
Bwa
??? missing short description for package bwa :-(
Canu
??? missing short description for package canu :-(
Changeo
??? missing short description for package changeo :-(
Crac
??? missing short description for package crac :-(
Cutadapt
??? missing short description for package cutadapt :-(
Daligner
??? missing short description for package daligner :-(
Deepnano
??? missing short description for package deepnano :-(
Discosnp
??? missing short description for package discosnp :-(
Dnaclust
??? missing short description for package dnaclust :-(
Dwgsim
??? missing short description for package dwgsim :-(
Ea-utils
??? missing short description for package ea-utils :-(
Fastaq
??? missing short description for package fastaq :-(
Fastp
??? missing short description for package fastp :-(
Fastqc
??? missing short description for package fastqc :-(
Flexbar
??? missing short description for package flexbar :-(
Fml-asm
??? missing short description for package fml-asm :-(
Fsm-lite
??? missing short description for package fsm-lite :-(
Grinder
??? missing short description for package grinder :-(
Hilive
??? missing short description for package hilive :-(
Hinge
??? missing short description for package hinge :-(
Hisat2
??? missing short description for package hisat2 :-(
Idba
??? missing short description for package idba :-(
Igor
??? missing short description for package igor :-(
Igv
??? missing short description for package igv :-(
Iva
??? missing short description for package iva :-(
Khmer
??? missing short description for package khmer :-(
Kissplice
??? missing short description for package kissplice :-(
Kraken
??? missing short description for package kraken :-(
Kraken2
??? missing short description for package kraken2 :-(
Last-align
??? missing short description for package last-align :-(
Libvcflib-tools
??? missing short description for package libvcflib-tools :-(
Macs
??? missing short description for package macs :-(
Mapdamage
??? missing short description for package mapdamage :-(
Mapsembler2
??? missing short description for package mapsembler2 :-(
Maq
??? missing short description for package maq :-(
Maqview
??? missing short description for package maqview :-(
Mhap
??? missing short description for package mhap :-(
Microbiomeutil
??? missing short description for package microbiomeutil :-(
Mira-assembler
??? missing short description for package mira-assembler :-(
Mothur
??? missing short description for package mothur :-(
Nanopolish
??? missing short description for package nanopolish :-(
Paleomix
??? missing short description for package paleomix :-(
Pbhoney
??? missing short description for package pbhoney :-(
Pbjelly
??? missing short description for package pbjelly :-(
Pbsuite
??? missing short description for package pbsuite :-(
Picard-tools
??? missing short description for package picard-tools :-(
Pirs
??? missing short description for package pirs :-(
Pizzly
??? missing short description for package pizzly :-(
Placnet
??? missing short description for package placnet :-(
Poretools
??? missing short description for package poretools :-(
Python3-airr
??? missing short description for package python3-airr :-(
Python3-gffutils
??? missing short description for package python3-gffutils :-(
Python3-presto
??? missing short description for package python3-presto :-(
Python3-pybedtools
??? missing short description for package python3-pybedtools :-(
Python3-sqt
??? missing short description for package python3-sqt :-(
Q2cli
??? missing short description for package q2cli :-(
Qcumber
??? missing short description for package qcumber :-(
Qiime
??? missing short description for package qiime :-(
Quorum
??? missing short description for package quorum :-(
R-bioc-deseq2
??? missing short description for package r-bioc-deseq2 :-(
R-bioc-edger
??? missing short description for package r-bioc-edger :-(
R-bioc-hilbertvis
??? missing short description for package r-bioc-hilbertvis :-(
R-bioc-metagenomeseq
??? missing short description for package r-bioc-metagenomeseq :-(
R-bioc-rsubread
??? missing short description for package r-bioc-rsubread :-(
R-cran-alakazam
??? missing short description for package r-cran-alakazam :-(
R-cran-shazam
??? missing short description for package r-cran-shazam :-(
R-cran-tcr
??? missing short description for package r-cran-tcr :-(
R-cran-tigger
??? missing short description for package r-cran-tigger :-(
Rna-star
??? missing short description for package rna-star :-(
Rtax
??? missing short description for package rtax :-(
Salmon
??? missing short description for package salmon :-(
Sambamba
??? missing short description for package sambamba :-(
Samblaster
??? missing short description for package samblaster :-(
Samtools
??? missing short description for package samtools :-(
Scoary
??? missing short description for package scoary :-(
Scythe
??? missing short description for package scythe :-(
Seqprep
??? missing short description for package seqprep :-(
Seqtk
??? missing short description for package seqtk :-(
Sga
??? missing short description for package sga :-(
Sickle
??? missing short description for package sickle :-(
Sideretro
??? missing short description for package sideretro :-(
Smalt
??? missing short description for package smalt :-(
Smrtanalysis
??? missing short description for package smrtanalysis :-(
Snap-aligner
??? missing short description for package snap-aligner :-(
Sniffles
??? missing short description for package sniffles :-(
Snp-sites
??? missing short description for package snp-sites :-(
Snpomatic
??? missing short description for package snpomatic :-(
Soapdenovo
??? missing short description for package soapdenovo :-(
Soapdenovo2
??? missing short description for package soapdenovo2 :-(
Sortmerna
??? missing short description for package sortmerna :-(
Spades
??? missing short description for package spades :-(
Sprai
??? missing short description for package sprai :-(
Sra-toolkit
??? missing short description for package sra-toolkit :-(
Srst2
??? missing short description for package srst2 :-(
Ssake
??? missing short description for package ssake :-(
Stacks
??? missing short description for package stacks :-(
Stringtie
??? missing short description for package stringtie :-(
Subread
??? missing short description for package subread :-(
Sumaclust
??? missing short description for package sumaclust :-(
Sumatra
??? missing short description for package sumatra :-(
Tabix
??? missing short description for package tabix :-(
Transrate-tools
??? missing short description for package transrate-tools :-(
Trimmomatic
??? missing short description for package trimmomatic :-(
Trinityrnaseq
??? missing short description for package trinityrnaseq :-(
Uc-echo
??? missing short description for package uc-echo :-(
Vcftools
??? missing short description for package vcftools :-(
Velvet
??? missing short description for package velvet :-(
Velvet-long
??? missing short description for package velvet-long :-(
Velvetoptimiser
??? missing short description for package velvetoptimiser :-(
Vsearch
??? missing short description for package vsearch :-(
Wham-align
??? missing short description for package wham-align :-(
Wigeon
??? missing short description for package wigeon :-(

Official Debian packages with lower relevance

Nanolyse
??? missing short description for package nanolyse :-(
Python3-anndata
??? missing short description for package python3-anndata :-(
R-bioc-isoformswitchanalyzer
??? missing short description for package r-bioc-isoformswitchanalyzer :-(
R-bioc-mofa2
??? missing short description for package r-bioc-mofa2 :-(

Debian packages in contrib or non-free

Cufflinks
??? missing short description for package cufflinks :-(
Vdjtools
??? missing short description for package vdjtools :-(

Packaging has started and developers might try the packaging code in VCS

Giira
RNA-Seq driven gene finding incorporating ambiguous reads
Graphmap2
highly sensitive and accurate mapper for long, error-prone reads
Mosaik-aligner
reference-guided aligner for next-generation sequencing
Nanoplot
plotting scripts for long read sequencing data
Umap
quantify genome and methylome mappability

No known packages available

Annovar
annotate genetic variants detected from diverse genomes
Forge
genome assembler for mixed read types

Phylogeny - Debian Med phylogeny packages

This lists Debian packages related to phylogeny for use in life sciences. The purpose of this compilation of packages is to have a handy subset of from the med-bio metapackage which contains a lot more than only phylogeny related software.

Official Debian packages with high relevance

Altree
??? missing short description for package altree :-(
Beast-mcmc
??? missing short description for package beast-mcmc :-(
Clustalw
??? missing short description for package clustalw :-(
Clustalx
??? missing short description for package clustalx :-(
Dialign
??? missing short description for package dialign :-(
Dialign-tx
??? missing short description for package dialign-tx :-(
Exonerate
??? missing short description for package exonerate :-(
Fastdnaml
??? missing short description for package fastdnaml :-(
Fasttree
??? missing short description for package fasttree :-(
Figtree
??? missing short description for package figtree :-(
Gmap
??? missing short description for package gmap :-(
Hmmer
??? missing short description for package hmmer :-(
Iqtree
??? missing short description for package iqtree :-(
Jmodeltest
??? missing short description for package jmodeltest :-(
Kalign
??? missing short description for package kalign :-(
Mrbayes
??? missing short description for package mrbayes :-(
Muscle
??? missing short description for package muscle :-(
Muscle3
??? missing short description for package muscle3 :-(
Mustang
??? missing short description for package mustang :-(
Njplot
??? missing short description for package njplot :-(
Phylip
??? missing short description for package phylip :-(
Phyml
??? missing short description for package phyml :-(
Poa
??? missing short description for package poa :-(
Populations
??? missing short description for package populations :-(
Pplacer
??? missing short description for package pplacer :-(
Proalign
??? missing short description for package proalign :-(
Probalign
??? missing short description for package probalign :-(
Probcons
??? missing short description for package probcons :-(
Proda
??? missing short description for package proda :-(
Prottest
??? missing short description for package prottest :-(
Quicktree
??? missing short description for package quicktree :-(
Seaview
??? missing short description for package seaview :-(
Sigma-align
??? missing short description for package sigma-align :-(
Spread-phy
??? missing short description for package spread-phy :-(
T-coffee
??? missing short description for package t-coffee :-(
Tm-align
??? missing short description for package tm-align :-(
Tree-ppuzzle
??? missing short description for package tree-ppuzzle :-(
Tree-puzzle
??? missing short description for package tree-puzzle :-(
Treeview
??? missing short description for package treeview :-(
Treeviewx
??? missing short description for package treeviewx :-(
Veryfasttree
??? missing short description for package veryfasttree :-(

Official Debian packages with lower relevance

Python3-treetime
??? missing short description for package python3-treetime :-(

Packaging has started and developers might try the packaging code in VCS

Forester
Graphical vizualiation tool Archaeopteryx
Patristic
Calculate patristic distances and comparing the components of genetic change

No known packages available but some record of interest (WNPP bug)

Phylowin
Graphical interface for molecular phylogenetic inference

No known packages available

Gbioseq
DNA sequence editor for Linux
Jstreeview
Editor for Phylogenetic Trees
Phpphylotree
draw phylogenetic trees
Treetime
Bayesian sampling of phylogenetic trees from molecular data

Cloud - Debian Med bioinformatics applications usable in cloud computing

This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited.

Official Debian packages with high relevance

Abyss
??? missing short description for package abyss :-(
Acedb-other
??? missing short description for package acedb-other :-(
Aevol
??? missing short description for package aevol :-(
Alien-hunter
??? missing short description for package alien-hunter :-(
Altree
??? missing short description for package altree :-(
Amap-align
??? missing short description for package amap-align :-(
Ampliconnoise
??? missing short description for package ampliconnoise :-(
Anfo
??? missing short description for package anfo :-(
Aragorn
??? missing short description for package aragorn :-(
Arden
??? missing short description for package arden :-(
Autodock
??? missing short description for package autodock :-(
Autodock-vina
??? missing short description for package autodock-vina :-(
Autogrid
??? missing short description for package autogrid :-(
Bamtools
??? missing short description for package bamtools :-(
Bedtools
??? missing short description for package bedtools :-(
Bioperl
??? missing short description for package bioperl :-(
Bioperl-run
??? missing short description for package bioperl-run :-(
Biosquid
??? missing short description for package biosquid :-(
Bowtie
??? missing short description for package bowtie :-(
Bowtie2
??? missing short description for package bowtie2 :-(
Boxshade
??? missing short description for package boxshade :-(
Bwa
??? missing short description for package bwa :-(
Cassiopee
??? missing short description for package cassiopee :-(
Cd-hit
??? missing short description for package cd-hit :-(
Cdbfasta
??? missing short description for package cdbfasta :-(
Circos
??? missing short description for package circos :-(
Clearcut
??? missing short description for package clearcut :-(
Clonalframe
??? missing short description for package clonalframe :-(
Clustalo
??? missing short description for package clustalo :-(
Clustalw
??? missing short description for package clustalw :-(
Concavity
??? missing short description for package concavity :-(
Conservation-code
??? missing short description for package conservation-code :-(
Datamash
??? missing short description for package datamash :-(
Dialign
??? missing short description for package dialign :-(
Dialign-tx
??? missing short description for package dialign-tx :-(
Discosnp
??? missing short description for package discosnp :-(
Disulfinder
??? missing short description for package disulfinder :-(
Dnaclust
??? missing short description for package dnaclust :-(
Dssp
??? missing short description for package dssp :-(
Embassy-domainatrix
??? missing short description for package embassy-domainatrix :-(
Embassy-domalign
??? missing short description for package embassy-domalign :-(
Embassy-domsearch
??? missing short description for package embassy-domsearch :-(
Emboss
??? missing short description for package emboss :-(
Exonerate
??? missing short description for package exonerate :-(
Fastdnaml
??? missing short description for package fastdnaml :-(
Fastlink
??? missing short description for package fastlink :-(
Fastqc
??? missing short description for package fastqc :-(
Fasttree
??? missing short description for package fasttree :-(
Fitgcp
??? missing short description for package fitgcp :-(
Flexbar
??? missing short description for package flexbar :-(
Freecontact
??? missing short description for package freecontact :-(
Gasic
??? missing short description for package gasic :-(
Genometools
??? missing short description for package genometools :-(
Gff2aplot
??? missing short description for package gff2aplot :-(
Gff2ps
??? missing short description for package gff2ps :-(
Glam2
??? missing short description for package glam2 :-(
Gmap
??? missing short description for package gmap :-(
Grinder
??? missing short description for package grinder :-(
Gromacs
??? missing short description for package gromacs :-(
Hhsuite
??? missing short description for package hhsuite :-(
Hisat2
??? missing short description for package hisat2 :-(
Hmmer
??? missing short description for package hmmer :-(
Idba
??? missing short description for package idba :-(
Infernal
??? missing short description for package infernal :-(
Jellyfish
??? missing short description for package jellyfish :-(
Kalign
??? missing short description for package kalign :-(
Kissplice
??? missing short description for package kissplice :-(
Last-align
??? missing short description for package last-align :-(
Loki
??? missing short description for package loki :-(
Macs
??? missing short description for package macs :-(
Mafft
??? missing short description for package mafft :-(
Mapsembler2
??? missing short description for package mapsembler2 :-(
Maq
??? missing short description for package maq :-(
Melting
??? missing short description for package melting :-(
Minia
??? missing short description for package minia :-(
Mipe
??? missing short description for package mipe :-(
Mira-assembler
??? missing short description for package mira-assembler :-(
Mlv-smile
??? missing short description for package mlv-smile :-(
Mothur
??? missing short description for package mothur :-(
Mrbayes
??? missing short description for package mrbayes :-(
Mummer
??? missing short description for package mummer :-(
Muscle
??? missing short description for package muscle :-(
Muscle3
??? missing short description for package muscle3 :-(
Mustang
??? missing short description for package mustang :-(
Ncbi-epcr
??? missing short description for package ncbi-epcr :-(
Ncbi-tools-bin
??? missing short description for package ncbi-tools-bin :-(
Ncoils
??? missing short description for package ncoils :-(
Neobio
??? missing short description for package neobio :-(
Paraclu
??? missing short description for package paraclu :-(
Parsinsert
??? missing short description for package parsinsert :-(
Pdb2pqr
??? missing short description for package pdb2pqr :-(
Perm
??? missing short description for package perm :-(
Phyml
??? missing short description for package phyml :-(
Phyutility
??? missing short description for package phyutility :-(
Picard-tools
??? missing short description for package picard-tools :-(
Plink
??? missing short description for package plink :-(
Plink1.9
??? missing short description for package plink1.9 :-(
Plink2
??? missing short description for package plink2 :-(
Poa
??? missing short description for package poa :-(
Prank
??? missing short description for package prank :-(
Prime-phylo
??? missing short description for package prime-phylo :-(
Primer3
??? missing short description for package primer3 :-(
Probabel
??? missing short description for package probabel :-(
Probcons
??? missing short description for package probcons :-(
Proda
??? missing short description for package proda :-(
Prodigal
??? missing short description for package prodigal :-(
Python3-biomaj3-cli
??? missing short description for package python3-biomaj3-cli :-(
Python3-biopython
??? missing short description for package python3-biopython :-(
Python3-cogent3
??? missing short description for package python3-cogent3 :-(
Qiime
??? missing short description for package qiime :-(
R-bioc-edger
??? missing short description for package r-bioc-edger :-(
R-bioc-hilbertvis
??? missing short description for package r-bioc-hilbertvis :-(
R-cran-pvclust
??? missing short description for package r-cran-pvclust :-(
R-cran-qtl
??? missing short description for package r-cran-qtl :-(
R-cran-vegan
??? missing short description for package r-cran-vegan :-(
R-other-mott-happy.hbrem
??? missing short description for package r-other-mott-happy.hbrem :-(
Raster3d
??? missing short description for package raster3d :-(
Readseq
??? missing short description for package readseq :-(
Rnahybrid
??? missing short description for package rnahybrid :-(
Rtax
??? missing short description for package rtax :-(
Samtools
??? missing short description for package samtools :-(
Seqan-apps
??? missing short description for package seqan-apps :-(
Sibsim4
??? missing short description for package sibsim4 :-(
Sigma-align
??? missing short description for package sigma-align :-(
Sim4
??? missing short description for package sim4 :-(
Smalt
??? missing short description for package smalt :-(
Snap
??? missing short description for package snap :-(
Soapdenovo
??? missing short description for package soapdenovo :-(
Soapdenovo2
??? missing short description for package soapdenovo2 :-(
Sra-toolkit
??? missing short description for package sra-toolkit :-(
Ssake
??? missing short description for package ssake :-(
Staden-io-lib-utils
??? missing short description for package staden-io-lib-utils :-(
T-coffee
??? missing short description for package t-coffee :-(
Tabix
??? missing short description for package tabix :-(
Theseus
??? missing short description for package theseus :-(
Tigr-glimmer
??? missing short description for package tigr-glimmer :-(
Tree-ppuzzle
??? missing short description for package tree-ppuzzle :-(
Tree-puzzle
??? missing short description for package tree-puzzle :-(
Vcftools
??? missing short description for package vcftools :-(
Velvet
??? missing short description for package velvet :-(
Veryfasttree
??? missing short description for package veryfasttree :-(
Wise
??? missing short description for package wise :-(

Debian packages in contrib or non-free

Cufflinks
??? missing short description for package cufflinks :-(

Packaging has started and developers might try the packaging code in VCS

Bagpipe
genomewide LD mapping
Embassy-phylip
EMBOSS conversions of the programs in the phylip package
Giira
RNA-Seq driven gene finding incorporating ambiguous reads

Content management - Debian Med content management systems

Here you can find software that is useful to build a content management system for medical care.

Packaging has started and developers might try the packaging code in VCS

Xnat
platform for data management and productivity tasks in neuroimaging
Zope-zms
Content management for science, technology and medicine

No known packages available

Hid
database management system for clinical imaging

Covid-19 - This task exists only for tagging COVID-19 relevant cases

The Debian Med team intends to take part at the

 COVID-19 Biohackathon (April 5-11, 2020)
This task was created only for the purpose to list relevant packages.

Official Debian packages with high relevance

Abacas
??? missing short description for package abacas :-(
Abyss
??? missing short description for package abyss :-(
Allelecount
??? missing short description for package allelecount :-(
Assembly-stats
??? missing short description for package assembly-stats :-(
Augur
??? missing short description for package augur :-(
Bamclipper
??? missing short description for package bamclipper :-(
Bamkit
??? missing short description for package bamkit :-(
Bbmap
??? missing short description for package bbmap :-(
Bcalm
??? missing short description for package bcalm :-(
Bcftools
??? missing short description for package bcftools :-(
Bedtools
??? missing short description for package bedtools :-(
Biobambam2
??? missing short description for package biobambam2 :-(
Bowtie2
??? missing short description for package bowtie2 :-(
Busco
??? missing short description for package busco :-(
Bustools
??? missing short description for package bustools :-(
Bwa
??? missing short description for package bwa :-(
Cat-bat
??? missing short description for package cat-bat :-(
Centrifuge
??? missing short description for package centrifuge :-(
Changeo
??? missing short description for package changeo :-(
Chip-seq
??? missing short description for package chip-seq :-(
Clonalframeml
??? missing short description for package clonalframeml :-(
Cutadapt
??? missing short description for package cutadapt :-(
Cwltool
??? missing short description for package cwltool :-(
Dcmtk
??? missing short description for package dcmtk :-(
Delly
??? missing short description for package delly :-(
Dextractor
??? missing short description for package dextractor :-(
Diamond-aligner
??? missing short description for package diamond-aligner :-(
Discosnp
??? missing short description for package discosnp :-(
Drop-seq-tools
??? missing short description for package drop-seq-tools :-(
Fasta3
??? missing short description for package fasta3 :-(
Fastani
??? missing short description for package fastani :-(
Fastp
??? missing short description for package fastp :-(
Fastqc
??? missing short description for package fastqc :-(
Filtlong
??? missing short description for package filtlong :-(
Flash
??? missing short description for package flash :-(
Flye
??? missing short description for package flye :-(
Freebayes
??? missing short description for package freebayes :-(
Genometools
??? missing short description for package genometools :-(
Gffread
??? missing short description for package gffread :-(
Ginkgocadx
??? missing short description for package ginkgocadx :-(
Gnumed-client
??? missing short description for package gnumed-client :-(
Gnumed-server
??? missing short description for package gnumed-server :-(
Gromacs
??? missing short description for package gromacs :-(
Gubbins
??? missing short description for package gubbins :-(
Imagej
??? missing short description for package imagej :-(
Ivar
??? missing short description for package ivar :-(
Kalign
??? missing short description for package kalign :-(
Kallisto
??? missing short description for package kallisto :-(
Kraken2
??? missing short description for package kraken2 :-(
Lastz
??? missing short description for package lastz :-(
Libbbhash-dev
??? missing short description for package libbbhash-dev :-(
Libchipcard-dev
??? missing short description for package libchipcard-dev :-(
Libgclib-dev
??? missing short description for package libgclib-dev :-(
Libgdcm-tools
??? missing short description for package libgdcm-tools :-(
Libhtscodecs-dev
??? missing short description for package libhtscodecs-dev :-(
Libics-dev
??? missing short description for package libics-dev :-(
Libmaus2-dev
??? missing short description for package libmaus2-dev :-(
Libmilib-java
??? missing short description for package libmilib-java :-(
Libseqan3-dev
??? missing short description for package libseqan3-dev :-(
Lighter
??? missing short description for package lighter :-(
Lumpy-sv
??? missing short description for package lumpy-sv :-(
Mecat2
??? missing short description for package mecat2 :-(
Megahit
??? missing short description for package megahit :-(
Metabat
??? missing short description for package metabat :-(
Minia
??? missing short description for package minia :-(
Minimap2
??? missing short description for package minimap2 :-(
Mmb
??? missing short description for package mmb :-(
Mmseqs2
??? missing short description for package mmseqs2 :-(
Multiqc
??? missing short description for package multiqc :-(
Muscle
??? missing short description for package muscle :-(
Muscle3
??? missing short description for package muscle3 :-(
Nanofilt
??? missing short description for package nanofilt :-(
Nanolyse
??? missing short description for package nanolyse :-(
Nanook
??? missing short description for package nanook :-(
Nanopolish
??? missing short description for package nanopolish :-(
Nanosv
??? missing short description for package nanosv :-(
Ncbi-blast+
??? missing short description for package ncbi-blast+ :-(
Ngmlr
??? missing short description for package ngmlr :-(
Nthash
??? missing short description for package nthash :-(
Odil
??? missing short description for package odil :-(
Orthanc
??? missing short description for package orthanc :-(
Orthanc-dicomweb
??? missing short description for package orthanc-dicomweb :-(
Orthanc-python
??? missing short description for package orthanc-python :-(
Orthanc-wsi
??? missing short description for package orthanc-wsi :-(
Paleomix
??? missing short description for package paleomix :-(
Parallel-fastq-dump
??? missing short description for package parallel-fastq-dump :-(
Parasail
??? missing short description for package parasail :-(
Picard-tools
??? missing short description for package picard-tools :-(
Picopore
??? missing short description for package picopore :-(
Pigx-rnaseq
??? missing short description for package pigx-rnaseq :-(
Pinfish
??? missing short description for package pinfish :-(
Plasmidid
??? missing short description for package plasmidid :-(
Plink1.9
??? missing short description for package plink1.9 :-(
Plink2
??? missing short description for package plink2 :-(
Plip
??? missing short description for package plip :-(
Porechop
??? missing short description for package porechop :-(
Poretools
??? missing short description for package poretools :-(
Pplacer
??? missing short description for package pplacer :-(
Presto
??? missing short description for package presto :-(
Prinseq-lite
??? missing short description for package prinseq-lite :-(
Prokka
??? missing short description for package prokka :-(
Proteinortho
??? missing short description for package proteinortho :-(
Pybedtools-bin
??? missing short description for package pybedtools-bin :-(
Pycoqc
??? missing short description for package pycoqc :-(
Python3-biom-format
??? missing short description for package python3-biom-format :-(
Python3-biopython
??? missing short description for package python3-biopython :-(
Python3-bx
??? missing short description for package python3-bx :-(
Python3-cgecore
??? missing short description for package python3-cgecore :-(
Python3-cogent3
??? missing short description for package python3-cogent3 :-(
Python3-cooler
??? missing short description for package python3-cooler :-(
Python3-cyvcf2
??? missing short description for package python3-cyvcf2 :-(
Python3-depinfo
??? missing short description for package python3-depinfo :-(
Python3-drmaa
??? missing short description for package python3-drmaa :-(
Python3-etelemetry
??? missing short description for package python3-etelemetry :-(
Python3-gffutils
??? missing short description for package python3-gffutils :-(
Python3-htseq
??? missing short description for package python3-htseq :-(
Python3-nanoget
??? missing short description for package python3-nanoget :-(
Python3-nanomath
??? missing short description for package python3-nanomath :-(
Python3-pairix
??? missing short description for package python3-pairix :-(
Python3-pairtools
??? missing short description for package python3-pairtools :-(
Python3-pauvre
??? missing short description for package python3-pauvre :-(
Python3-pbcommand
??? missing short description for package python3-pbcommand :-(
Python3-pbcore
??? missing short description for package python3-pbcore :-(
Python3-pyani
??? missing short description for package python3-pyani :-(
Python3-pychopper
??? missing short description for package python3-pychopper :-(
Python3-pydicom
??? missing short description for package python3-pydicom :-(
Python3-pyfaidx
??? missing short description for package python3-pyfaidx :-(
Python3-pynn
??? missing short description for package python3-pynn :-(
Python3-pysam
??? missing short description for package python3-pysam :-(
Python3-questplus
??? missing short description for package python3-questplus :-(
Python3-scitrack
??? missing short description for package python3-scitrack :-(
Python3-screed
??? missing short description for package python3-screed :-(
Python3-seirsplus
??? missing short description for package python3-seirsplus :-(
Python3-streamz
??? missing short description for package python3-streamz :-(
Python3-tinyalign
??? missing short description for package python3-tinyalign :-(
Python3-toolz
??? missing short description for package python3-toolz :-(
Python3-torch
??? missing short description for package python3-torch :-(
Python3-tornado
??? missing short description for package python3-tornado :-(
Python3-treetime
??? missing short description for package python3-treetime :-(
Python3-vcf
??? missing short description for package python3-vcf :-(
Q2-cutadapt
??? missing short description for package q2-cutadapt :-(
Q2-feature-table
??? missing short description for package q2-feature-table :-(
Q2-quality-filter
??? missing short description for package q2-quality-filter :-(
Qcat
??? missing short description for package qcat :-(
Quicktree
??? missing short description for package quicktree :-(
R-bioc-htsfilter
??? missing short description for package r-bioc-htsfilter :-(
R-bioc-limma
??? missing short description for package r-bioc-limma :-(
R-bioc-mutationalpatterns
??? missing short description for package r-bioc-mutationalpatterns :-(
R-bioc-pwmenrich
??? missing short description for package r-bioc-pwmenrich :-(
R-bioc-rcpi
??? missing short description for package r-bioc-rcpi :-(
R-bioc-rgsepd
??? missing short description for package r-bioc-rgsepd :-(
R-bioc-rsamtools
??? missing short description for package r-bioc-rsamtools :-(
R-bioc-tcgabiolinks
??? missing short description for package r-bioc-tcgabiolinks :-(
R-cran-alakazam
??? missing short description for package r-cran-alakazam :-(
R-cran-covid19us
??? missing short description for package r-cran-covid19us :-(
R-cran-diagnosismed
??? missing short description for package r-cran-diagnosismed :-(
R-cran-epi
??? missing short description for package r-cran-epi :-(
R-cran-epibasix
??? missing short description for package r-cran-epibasix :-(
R-cran-epicalc
??? missing short description for package r-cran-epicalc :-(
R-cran-epiestim
??? missing short description for package r-cran-epiestim :-(
R-cran-epir
??? missing short description for package r-cran-epir :-(
R-cran-epitools
??? missing short description for package r-cran-epitools :-(
R-cran-hms
??? missing short description for package r-cran-hms :-(
R-cran-incidence
??? missing short description for package r-cran-incidence :-(
R-cran-kernelheaping
??? missing short description for package r-cran-kernelheaping :-(
R-cran-lexrankr
??? missing short description for package r-cran-lexrankr :-(
R-cran-mediana
??? missing short description for package r-cran-mediana :-(
R-cran-msm
??? missing short description for package r-cran-msm :-(
R-cran-qtl
??? missing short description for package r-cran-qtl :-(
R-cran-seroincidence
??? missing short description for package r-cran-seroincidence :-(
R-cran-sf
??? missing short description for package r-cran-sf :-(
R-cran-shazam
??? missing short description for package r-cran-shazam :-(
R-cran-sjplot
??? missing short description for package r-cran-sjplot :-(
R-cran-spp
??? missing short description for package r-cran-spp :-(
R-cran-stringi
??? missing short description for package r-cran-stringi :-(
R-cran-surveillance
??? missing short description for package r-cran-surveillance :-(
R-cran-tigger
??? missing short description for package r-cran-tigger :-(
R-other-ascat
??? missing short description for package r-other-ascat :-(
Ragout
??? missing short description for package ragout :-(
Readucks
??? missing short description for package readucks :-(
Recan
??? missing short description for package recan :-(
Rna-star
??? missing short description for package rna-star :-(
Rsem
??? missing short description for package rsem :-(
Ruby-bio
??? missing short description for package ruby-bio :-(
Salmon
??? missing short description for package salmon :-(
Samblaster
??? missing short description for package samblaster :-(
Samclip
??? missing short description for package samclip :-(
Samtools
??? missing short description for package samtools :-(
Scrappie
??? missing short description for package scrappie :-(
Sepp
??? missing short description for package sepp :-(
Seqkit
??? missing short description for package seqkit :-(
Seqmagick
??? missing short description for package seqmagick :-(
Shapeit4
??? missing short description for package shapeit4 :-(
Shiny-server
??? missing short description for package shiny-server :-(
Shovill
??? missing short description for package shovill :-(
Smrtanalysis
??? missing short description for package smrtanalysis :-(
Snakemake
??? missing short description for package snakemake :-(
Snpeff
??? missing short description for package snpeff :-(
Snpsift
??? missing short description for package snpsift :-(
Spades
??? missing short description for package spades :-(
Spaln
??? missing short description for package spaln :-(
Staden-io-lib-utils
??? missing short description for package staden-io-lib-utils :-(
Stringtie
??? missing short description for package stringtie :-(
Sumaclust
??? missing short description for package sumaclust :-(
Texlive-science
??? missing short description for package texlive-science :-(
Thesias
??? missing short description for package thesias :-(
Tiddit
??? missing short description for package tiddit :-(
Tipp
??? missing short description for package tipp :-(
Tnseq-transit
??? missing short description for package tnseq-transit :-(
Toil
??? missing short description for package toil :-(
Tombo
??? missing short description for package tombo :-(
Tophat-recondition
??? missing short description for package tophat-recondition :-(
Trinculo
??? missing short description for package trinculo :-(
Umap-learn
??? missing short description for package umap-learn :-(
Umis
??? missing short description for package umis :-(
Uncalled
??? missing short description for package uncalled :-(
Unicycler
??? missing short description for package unicycler :-(
Vg
??? missing short description for package vg :-(
Vsearch
??? missing short description for package vsearch :-(
Vt
??? missing short description for package vt :-(
Workrave
??? missing short description for package workrave :-(
Wtdbg2
??? missing short description for package wtdbg2 :-(
Yanagiba
??? missing short description for package yanagiba :-(
Yanosim
??? missing short description for package yanosim :-(

Official Debian packages with lower relevance

Libsimde-dev
??? missing short description for package libsimde-dev :-(
Python3-anndata
??? missing short description for package python3-anndata :-(
Python3-mmtf
??? missing short description for package python3-mmtf :-(
R-bioc-rsubread
??? missing short description for package r-bioc-rsubread :-(

Debian packages in contrib or non-free

Python3-seqcluster
??? missing short description for package python3-seqcluster :-(
Varscan
??? missing short description for package varscan :-(
Vienna-rna
??? missing short description for package vienna-rna :-(

Packaging has started and developers might try the packaging code in VCS

Arvados
managing and analyzing biomedical big data
Auspice
web app for visualizing pathogen evolution
Blat
BLAST-Like Alignment Tool
Chime
COVID-19 Hospital Impact Model for Epidemics
Covpipe
pipeline to generate consensus sequences from NGS reads
Ensembl-vep
Variant Effect Predictor predicting the functional effects of genomic variants
Fieldbioinformatics
pipeline with virus identification with Nanopore sequencer
Flappie
flip-flop basecaller for Oxford Nanopore reads
Graphmap2
highly sensitive and accurate mapper for long, error-prone reads
Manta
structural variant and indel caller for mapped sequencing data
Medaka
sequence correction provided by ONT Research
Nanoplot
plotting scripts for long read sequencing data
Ncbi-magicblast
RNA-seq mapping tool
Nextflow
DSL for data-driven computational pipelines
Nextstrain-ncov
Nextstrain build for novel coronavirus (nCoV)
Nf-core-artic
nf-core ARTIC field bioinformatics viral genome pipeline
Oncofuse
predicting oncogenic potential of gene fusions
Optitype
precision HLA typing from next-generation sequencing data
Pangolin
Phylogenetic Assignment of Named Global Outbreak LINeages
Pomoxis
analysis components from Oxford Nanopore Research
Python3-idseq-dag
Pipeline engine for IDseq (Python 3)
Python3-scanpy
Single-Cell Analysis in Python
Qualimap
evaluating next generation sequencing alignment data
Quast
Quality Assessment Tool for Genome Assemblies
R-cran-covid19
GNU R Coronavirus COVID-19 data acquisition and visualization
R-other-fastbaps
A fast genetic clustering algorithm that approximates a Dirichlet Process Mixture model
Rosa
Removal of Spurious Antisense in biological RNA sequences
Sailfish
RNA-seq expression estimation
Seqwish
alignment to variation graph inducer
Signalalign
HMM-HDP models for MinION signal alignments
Streamlit
fast way to build custom ML tools
Strelka
strelka2 germline and somatic small variant caller
Ufasta
utility to manipulate fasta files
Vadr
classification and annotation of viral sequences

Medical data - Debian Med drug databases

This metapackage will install free drug databases and related applications. The database can be accessed by any EMR using the application.

Official Debian packages with high relevance

Python3-hl7
??? missing short description for package python3-hl7 :-(

Official Debian packages with lower relevance

Oscar
??? missing short description for package oscar :-(

Packaging has started and developers might try the packaging code in VCS

Freediams
pharmaceutical drug prescription and interaction manager
Freemedforms-freedata
free extra-data for the FreeMedForms project

No known packages available

Drugref.org
pharmaceutical reference database

Dental - Debian Med packages related to dental practice

This metapackage contains dependencies for a collection of software which might be helpful for dentists to manage their practice.

Official Debian packages with high relevance

Entangle
??? missing short description for package entangle :-(
Imagetooth
??? missing short description for package imagetooth :-(

Epidemiology - Debian Med epidemiology related packages

This metapackage will install tools that are useful in epidemiological research. Several packages making use of the GNU R data language for statistical investigation. It might be a good idea to read the paper "A short introduction to R for Epidemiology" at http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf

Official Debian packages with high relevance

Python3-seirsplus
??? missing short description for package python3-seirsplus :-(
Python3-torch
??? missing short description for package python3-torch :-(
Python3-treetime
??? missing short description for package python3-treetime :-(
R-cran-covid19us
??? missing short description for package r-cran-covid19us :-(
R-cran-diagnosismed
??? missing short description for package r-cran-diagnosismed :-(
R-cran-epi
??? missing short description for package r-cran-epi :-(
R-cran-epibasix
??? missing short description for package r-cran-epibasix :-(
R-cran-epicalc
??? missing short description for package r-cran-epicalc :-(
R-cran-epiestim
??? missing short description for package r-cran-epiestim :-(
R-cran-epir
??? missing short description for package r-cran-epir :-(
R-cran-epitools
??? missing short description for package r-cran-epitools :-(
R-cran-incidence
??? missing short description for package r-cran-incidence :-(
R-cran-kernelheaping
??? missing short description for package r-cran-kernelheaping :-(
R-cran-lexrankr
??? missing short description for package r-cran-lexrankr :-(
R-cran-prevalence
??? missing short description for package r-cran-prevalence :-(
R-cran-seroincidence
??? missing short description for package r-cran-seroincidence :-(
R-cran-sf
??? missing short description for package r-cran-sf :-(
R-cran-sjplot
??? missing short description for package r-cran-sjplot :-(
R-cran-surveillance
??? missing short description for package r-cran-surveillance :-(

Official Debian packages with lower relevance

Python3-epimodels
??? missing short description for package python3-epimodels :-(
R-cran-cmprsk
??? missing short description for package r-cran-cmprsk :-(
R-cran-msm
??? missing short description for package r-cran-msm :-(
Shiny-server
??? missing short description for package shiny-server :-(

Packaging has started and developers might try the packaging code in VCS

Chime
COVID-19 Hospital Impact Model for Epidemics
Epifire
model the spread of an infectious disease in a population
Netepi-analysis
network-enabled tools for epidemiology and public health practice
Netepi-collection
network-enabled tools for epidemiology and public health practice
R-cran-covid19
GNU R Coronavirus COVID-19 data acquisition and visualization
Ushahidi
web platform for information collection

No known packages available but some record of interest (WNPP bug)

Repast
framework for creating agent based simulations

Hospital information systems - Debian Med suggestions for Hospital Information Systems

This metapackage contains dependencies for software and that could be useful ro run a Hospital Information System. While there is continuous work going on to package a ready to install system currently only preconditions are finished but hopefully helpful in hospitals anyway.

Official Debian packages with high relevance

Fis-gtm
??? missing short description for package fis-gtm :-(
Orthanc-wsi
??? missing short description for package orthanc-wsi :-(

Packaging has started and developers might try the packaging code in VCS

Care2x
integrated hospital information system
Openmrs
enterprise electronic medical record system framework
Tryton-modules-health
Tryton Application Platform (Health Module)
Vista-foia
metapackage for the latest version of vista-foia.

Unofficial packages built by somebody else

Oscar-mcmaster
Oscar (Web) A medical web application for electronic medical records

No known packages available but some record of interest (WNPP bug)

World-vista
repackage and extended version of VistA produced by WorldVistA

No known packages available

Hkma-cms
clinic management system
Ipath
telemedicine platform
Openeyes
ophthalmology electronic patient record system
Openmaxims
patient administration system and electronic patient record
Patientos
Healthcare Information System (HIS) for small hospitals and clinics

Imaging - Debian Med image processing and visualization packages

This metapackage will install Debian packages which might be useful in medical image processing and visualization.

On one hand, it installs several packages supporting various image file formats and image management, like DICOM (Digital Imaging and Communications in Medicine) which is the de-facto standard for medical image management, and NIFTI. On the other hand, it provides a variety of software packages that can be used for visualization and for image processing - either from a graphical user interface, the command line, or implemented in workflows.

Official Debian packages with high relevance

Amide
??? missing short description for package amide :-(
Ants
??? missing short description for package ants :-(
Bart
??? missing short description for package bart :-(
Bart-view
??? missing short description for package bart-view :-(
Biosig-tools
??? missing short description for package biosig-tools :-(
Camitk-imp
??? missing short description for package camitk-imp :-(
Ctn
??? missing short description for package ctn :-(
Ctsim
??? missing short description for package ctsim :-(
Dcm2niix
??? missing short description for package dcm2niix :-(
Dcmtk
??? missing short description for package dcmtk :-(
Dicom3tools
??? missing short description for package dicom3tools :-(
Dicomscope
??? missing short description for package dicomscope :-(
Gdf-tools
??? missing short description for package gdf-tools :-(
Ginkgocadx
??? missing short description for package ginkgocadx :-(
Gwyddion
??? missing short description for package gwyddion :-(
Heudiconv
??? missing short description for package heudiconv :-(
Imagej
??? missing short description for package imagej :-(
Invesalius
??? missing short description for package invesalius :-(
Ismrmrd-tools
??? missing short description for package ismrmrd-tools :-(
Itksnap
??? missing short description for package itksnap :-(
King
??? missing short description for package king :-(
Libgdcm-tools
??? missing short description for package libgdcm-tools :-(
Medcon
??? missing short description for package medcon :-(
Mia-tools
??? missing short description for package mia-tools :-(
Mia-viewit
??? missing short description for package mia-viewit :-(
Mialmpick
??? missing short description for package mialmpick :-(
Minc-tools
??? missing short description for package minc-tools :-(
Mricron
??? missing short description for package mricron :-(
Mrtrix3
??? missing short description for package mrtrix3 :-(
Nifti-bin
??? missing short description for package nifti-bin :-(
Odil
??? missing short description for package odil :-(
Odin
??? missing short description for package odin :-(
Openslide-tools
??? missing short description for package openslide-tools :-(
Orthanc
??? missing short description for package orthanc :-(
Orthanc-wsi
??? missing short description for package orthanc-wsi :-(
Pixelmed-apps
??? missing short description for package pixelmed-apps :-(
Plastimatch
??? missing short description for package plastimatch :-(
Python3-dipy
??? missing short description for package python3-dipy :-(
Python3-nibabel
??? missing short description for package python3-nibabel :-(
Python3-nipy
??? missing short description for package python3-nipy :-(
Python3-nipype
??? missing short description for package python3-nipype :-(
Python3-nitime
??? missing short description for package python3-nitime :-(
Python3-pydicom
??? missing short description for package python3-pydicom :-(
Python3-pyxid
??? missing short description for package python3-pyxid :-(
Python3-surfer
??? missing short description for package python3-surfer :-(
Sightcalibrator
??? missing short description for package sightcalibrator :-(
Sightviewer
??? missing short description for package sightviewer :-(
Sigviewer
??? missing short description for package sigviewer :-(
Teem-apps
??? missing short description for package teem-apps :-(
Vrrender
??? missing short description for package vrrender :-(
Vtk-dicom-tools
??? missing short description for package vtk-dicom-tools :-(
Xmedcon
??? missing short description for package xmedcon :-(

Official Debian packages with lower relevance

Cmtk
??? missing short description for package cmtk :-(
Elastix
??? missing short description for package elastix :-(
Illustrate
??? missing short description for package illustrate :-(
Imagemagick
??? missing short description for package imagemagick :-(
Imview
??? missing short description for package imview :-(
Orthanc-dicomweb
??? missing short description for package orthanc-dicomweb :-(
Orthanc-gdcm
??? missing short description for package orthanc-gdcm :-(
Orthanc-imagej
??? missing short description for package orthanc-imagej :-(
Orthanc-mysql
??? missing short description for package orthanc-mysql :-(
Orthanc-neuro
??? missing short description for package orthanc-neuro :-(
Orthanc-postgresql
??? missing short description for package orthanc-postgresql :-(
Orthanc-webviewer
??? missing short description for package orthanc-webviewer :-(
Paraview
??? missing short description for package paraview :-(
Pngquant
??? missing short description for package pngquant :-(
Science-workflow
??? missing short description for package science-workflow :-(
Trimage
??? missing short description for package trimage :-(

Debian packages in contrib or non-free

Bart-cuda
??? missing short description for package bart-cuda :-(
Vmtk
??? missing short description for package vmtk :-(

Packaging has started and developers might try the packaging code in VCS

Bioimagesuite
integrated image analysis software suite
Bioimagexd
Analyzing, processing and visualizing of multi dimensional microscopy images
Caret
Computerized Anatomical Reconstruction and Editing Toolkit
Cellprofiler
quantitatively measure phenotypes from images automatically
Connectomeviewer
Interactive Analysis and Visualization for MR Connectomics
Crea
base library of the creaTools medical image processing suite
Dicoogle
Java Advanced Imaging API reference implementation
Fiji
"batteries-included" distribution of ImageJ
Freesurfer
analysis and visualization of functional brain imaging data
Fsl
transitional dummy package
Fslview
viewer for (f)MRI and DTI data
Imagevis3d
desktop volume rendering application for large data
Incf-nidash-oneclick-clients
utility for pushing DICOM data to the INCF datasharing server
Insightapplications
InsightToolKit (ITK) based medical imaging applications
Jist
Java Image Science Toolkit
Kradview
medical image viewer for DICOM images
Libdcm4che-java
Clinical Image and Object Management
Mayam
Cross-platform DICOM Viewer
Micromanager
Microscopy Software
Mipav
quantitative analysis and visualization of medical images
Mni-colin27-nifti
Talairach stereotaxic space template
Openelectrophy
data analysis GUI for intra- and extra-cellular recordings
Openmeeg-tools
openmeeg library -- command line tools
Slicer
software package for visualization and image analysis - main application
Sofa-apps
GUI for the Simulation Open Framework Architecture (SOFA)
Stabilitycalc
evaluate fMRI scanner stability
Via-bin
tools for volumetric image analysis
Visit
interactive parallel visualization and graphical analysis tool
Voxbo
processing, statistical analysis, and display of brain imaging data
Xnat
platform for data management and productivity tasks in neuroimaging

Unofficial packages built by somebody else

Cdmedicpacs
web interface to PACS to access DICOM study images
Mni-autoreg
MNI average brain (305 MRI) stereotaxic registration model
Mni-n3
MNI Non-parametric Non-uniformity Normalization
Opendicom.net
API to DICOM in C# for Mono

No known packages available but some record of interest (WNPP bug)

Devide
Delft Visualization and Image processing Development Environment
Dtitk
DTI spatial normalization and atlas construction toolkit
Eeglab
toolbox for processing and visualization of electrophysiological data
Isis
I/O framework for neuroimaging data
Jemris
high performance computing MRI simulator
Opensourcepacs
medical image referral, archiving, routing and viewing system

No known packages available

Blox
medical imaging and visualization program
Brainvisa
image processing factory for MR images
Dcm4chee
Clinical Image and Object Management (enterprise)
Dicom4j
Java framework for Dicom
Drjekyll
interactive voxel editor for viewing and editing three-dimensional images
Dti-query
dynamic queries of the white matter brain pathways
Ecg2png
convert scanned electrocardiograms into PNG format
Gimias
Graphical Interface for Medical Image Analysis and Simulation
Hid
database management system for clinical imaging
Maris
package suite for Radiological Workflow
Medisnap
photograph, manage, view, compare, document and archive medical photos
Mesa-test-tools
IHE Test Software for Radiology
Miview
Medical Images viewer and converter
Mni-icbm152-nlin-2009
MNI stereotaxic space human brain template
Mrisim
simulator for magnetic resonance imaging data
Omero
coming standard LIMS for microscopy images
Piano
medical image processing library for surgical planning
Pymeg
suite for analysis of magnetoencephalography (MEG) data
Stir
Software for Tomographic Image Reconstruction
Tempo
3D visualization of brain electrical activity

Imaging development - Debian Med image processing and visualization packages development

This metapackage will install Debian packages which might be useful for developing applications for medical image processing and visualization.

Official Debian packages with high relevance

Cimg-dev
??? missing short description for package cimg-dev :-(
Ctn-dev
??? missing short description for package ctn-dev :-(
Gmic
??? missing short description for package gmic :-(
Libbart-dev
??? missing short description for package libbart-dev :-(
Libbiosig-dev
??? missing short description for package libbiosig-dev :-(
Libcamitk-dev
??? missing short description for package libcamitk-dev :-(
Libcifti-dev
??? missing short description for package libcifti-dev :-(
Libedf-dev
??? missing short description for package libedf-dev :-(
Libgdf-dev
??? missing short description for package libgdf-dev :-(
Libgiftiio-dev
??? missing short description for package libgiftiio-dev :-(
Libinsighttoolkit5-dev
??? missing short description for package libinsighttoolkit5-dev :-(
Libismrmrd-dev
??? missing short description for package libismrmrd-dev :-(
Libmaxflow-dev
??? missing short description for package libmaxflow-dev :-(
Libmia-2.4-dev
??? missing short description for package libmia-2.4-dev :-(
Libmialm-dev
??? missing short description for package libmialm-dev :-(
Libminc-dev
??? missing short description for package libminc-dev :-(
Libnifti2-dev
??? missing short description for package libnifti2-dev :-(
Libodil-dev
??? missing short description for package libodil-dev :-(
Libopencv-dev
??? missing short description for package libopencv-dev :-(
Libopenigtlink-dev
??? missing short description for package libopenigtlink-dev :-(
Libopenslide-dev
??? missing short description for package libopenslide-dev :-(
Libpapyrus3-dev
??? missing short description for package libpapyrus3-dev :-(
Libsight-dev
??? missing short description for package libsight-dev :-(
Libteem-dev
??? missing short description for package libteem-dev :-(
Libvigraimpex-dev
??? missing short description for package libvigraimpex-dev :-(
Libvistaio-dev
??? missing short description for package libvistaio-dev :-(
Libvolpack1-dev
??? missing short description for package libvolpack1-dev :-(
Libvtk-dicom-dev
??? missing short description for package libvtk-dicom-dev :-(
Libvtk9-dev
??? missing short description for package libvtk9-dev :-(
Libxdf-dev
??? missing short description for package libxdf-dev :-(
Octave-bart
??? missing short description for package octave-bart :-(
Octave-dicom
??? missing short description for package octave-dicom :-(
Octave-gdf
??? missing short description for package octave-gdf :-(
Odin
??? missing short description for package odin :-(
Python3-biosig
??? missing short description for package python3-biosig :-(
Python3-bioxtasraw
??? missing short description for package python3-bioxtasraw :-(
Python3-brian
??? missing short description for package python3-brian :-(
Python3-dcmstack
??? missing short description for package python3-dcmstack :-(
Python3-dipy
??? missing short description for package python3-dipy :-(
Python3-gdcm
??? missing short description for package python3-gdcm :-(
Python3-imageio
??? missing short description for package python3-imageio :-(
Python3-mia
??? missing short description for package python3-mia :-(
Python3-mne
??? missing short description for package python3-mne :-(
Python3-nibabel
??? missing short description for package python3-nibabel :-(
Python3-nipy
??? missing short description for package python3-nipy :-(
Python3-nipype
??? missing short description for package python3-nipype :-(
Python3-nitime
??? missing short description for package python3-nitime :-(
Python3-openslide
??? missing short description for package python3-openslide :-(
Python3-pydicom
??? missing short description for package python3-pydicom :-(
Python3-pyxnat
??? missing short description for package python3-pyxnat :-(
Python3-torchvision
??? missing short description for package python3-torchvision :-(
Python3-vigra
??? missing short description for package python3-vigra :-(

Official Debian packages with lower relevance

Libcamp-dev
??? missing short description for package libcamp-dev :-(
Libeegdev-dev
??? missing short description for package libeegdev-dev :-(
Libfreeimage-dev
??? missing short description for package libfreeimage-dev :-(
Libics-dev
??? missing short description for package libics-dev :-(
Libnifti-doc
??? missing short description for package libnifti-doc :-(
Libxdffileio-dev
??? missing short description for package libxdffileio-dev :-(

Debian packages in contrib or non-free

Libvmtk-dev
??? missing short description for package libvmtk-dev :-(

Packaging has started and developers might try the packaging code in VCS

Emokit
Emotiv EPOC headset Python interface
Libbio-formats-java
reading and writing proprietary microscopy image data and metadata
Libctk-dev
toolkit for medical imaging application development - devel
Libopenmeeg-dev
openmeeg library -- development files
Libopenslide-java
java wrapper for reading whole slide image files
Libvia-dev
library for volumetric image analysis

Unofficial packages built by somebody else

Libmni-perllib-perl
The MNI Perl Library

Laboratory - Debian Med suggestions for medical laboratories

This metapackage contains dependencies for software and that could be useful ro run a medical laboratory.

Official Debian packages with high relevance

Opencfu
??? missing short description for package opencfu :-(
Orthanc-wsi
??? missing short description for package orthanc-wsi :-(

Packaging has started and developers might try the packaging code in VCS

Openfreezer
Laboratory analysis, research and investigation software application

No known packages available

Catissuesuite
tool for biospecimen inventory management
Openelis
Enterprise Laboratory Information System

Oncology - Debian Med packages for oncology

This metapackage will install tools that are useful for radiation oncology.

Official Debian packages with high relevance

Orthanc-wsi
??? missing short description for package orthanc-wsi :-(
Simrisc
??? missing short description for package simrisc :-(

Official Debian packages with lower relevance

Python3-dicompylercore
??? missing short description for package python3-dicompylercore :-(

Packaging has started and developers might try the packaging code in VCS

Uw-prism
software tools for radiation therapy planning

No known packages available

Planunc
tools for radiotherapy treatment planning

Pharmacology - Debian Med packages for pharmaceutical research

This metapackage contains dependencies for a collection of software and documentation which is useful for pharmaceutical research.

Official Debian packages with high relevance

Chemtool
??? missing short description for package chemtool :-(
R-cran-dosefinding
??? missing short description for package r-cran-dosefinding :-(
R-cran-rpact
??? missing short description for package r-cran-rpact :-(

Physics - Debian Med packages for medical physicists

This metapackage contains dependencies for a collection of software and documentation which is useful for medical physicists in radiation oncology, diagnostics imaging and related fields.

Official Debian packages with high relevance

Biosig-tools
??? missing short description for package biosig-tools :-(
Gdf-tools
??? missing short description for package gdf-tools :-(
Octave
??? missing short description for package octave :-(
R-base
??? missing short description for package r-base :-(

Official Debian packages with lower relevance

Libbiosig-dev
??? missing short description for package libbiosig-dev :-(
Octave-biosig
??? missing short description for package octave-biosig :-(
Python3-biosig
??? missing short description for package python3-biosig :-(
Python3-multipletau
??? missing short description for package python3-multipletau :-(

Packaging has started and developers might try the packaging code in VCS

Paw
Physics Analysis Workstation - a graphical analysis program
Paw++
Physics Analysis Workstation (Lesstif-enhanced version)
Paw-demos
Physics Analysis Workstation examples and tests

No known packages available but some record of interest (WNPP bug)

Gate
Geant4 Application for Emission Tomography
Openvibe
platform for the design, test and use of BCI

Practice - Debian Med packages for practice management

This metapackage contains dependencies for a collection of software which might be helpful for practitioners to manage their practice.

Official Debian packages with high relevance

Entangle
??? missing short description for package entangle :-(
Ginkgocadx
??? missing short description for package ginkgocadx :-(
Gnumed-client
??? missing short description for package gnumed-client :-(
Gnumed-server
??? missing short description for package gnumed-server :-(
Libchipcard-tools
??? missing short description for package libchipcard-tools :-(
Orthanc
??? missing short description for package orthanc :-(
Orthanc-wsi
??? missing short description for package orthanc-wsi :-(
Oscar
??? missing short description for package oscar :-(
Qrisk2
??? missing short description for package qrisk2 :-(

Official Debian packages with lower relevance

Libctapimkt1
??? missing short description for package libctapimkt1 :-(

Packaging has started and developers might try the packaging code in VCS

Freediams
pharmaceutical drug prescription and interaction manager
Freemedforms-emr
electronic medical record manager
Freeshim
opensource electronic medical device interface
Openemr
Comprehensive medical practice management
Thera-pi
organization and management of outpatient clinics and rehabilitation-medicine companies

Unofficial packages built by somebody else

Elementalclinic
Electronical Medical Health record system for mental health
Freemed
Electronic Medical Record and Practice Management system
Tinyheb
billing system for midwives

No known packages available but some record of interest (WNPP bug)

Elexis
medical practice managemant system for use in Switzerland
Openrep
software for homeopathic repertorization and viewing materia medicae

No known packages available

Clearhealth
Medical practice management system
Freeb
Medical Bill formating module
Medintux
Medical practice management system
Mirrormed
EHR and practice management system
Mirth
HL7 integration engine
Openpms
medical billing, scheduling, and account management system
Proteus
clinical decision support guidelines model
Remitt
preparing and submitting medical billing data
Resmedicinae
comprising software solution for use in medicine
Sqlclinic
intranet solution for Saint Vincents Catholic Medical Centers of New York

Psychology - Debian Med packages for psychology

This metapackage contains dependencies for a collection of software which might be helpful for psychological research.

Official Debian packages with high relevance

Orthanc-neuro
??? missing short description for package orthanc-neuro :-(
Praat
??? missing short description for package praat :-(
Psignifit
??? missing short description for package psignifit :-(
Psychopy
??? missing short description for package psychopy :-(
Python3-bioxtasraw
??? missing short description for package python3-bioxtasraw :-(
R-cran-foreign
??? missing short description for package r-cran-foreign :-(
R-cran-psy
??? missing short description for package r-cran-psy :-(
R-cran-psych
??? missing short description for package r-cran-psych :-(
R-cran-psychometric
??? missing short description for package r-cran-psychometric :-(
R-cran-psychotree
??? missing short description for package r-cran-psychotree :-(
R-cran-psyphy
??? missing short description for package r-cran-psyphy :-(

Official Debian packages with lower relevance

Python3-bids-validator
??? missing short description for package python3-bids-validator :-(
Python3-bmtk
??? missing short description for package python3-bmtk :-(
Python3-pynwb
??? missing short description for package python3-pynwb :-(
Science-psychophysics
??? missing short description for package science-psychophysics :-(

Packaging has started and developers might try the packaging code in VCS

Python-pyepl
module for coding psychology experiments in Python

Rehabilitation - Debian Med packages for rehabilitation technologies

This metapackage will install tools that are useful for rehabilitation and therapy.

Official Debian packages with lower relevance

Aghermann
??? missing short description for package aghermann :-(

Packaging has started and developers might try the packaging code in VCS

Sitplus
Free software framework for ludic-therapeutic activities

Research - Debian Med packages for medical research

This metapackage will install tools that are useful for medical research.

Official Debian packages with high relevance

R-cran-rpact
??? missing short description for package r-cran-rpact :-(

No known packages available but some record of interest (WNPP bug)

Openclinica
electronic data capture and clinical data management

Statistics - Debian Med statistics

This metapackage will install packages which are helpful to do statistics with a special focus on tasks in medical care.

Official Debian packages with high relevance

R-bioc-edger
??? missing short description for package r-bioc-edger :-(
R-bioc-limma
??? missing short description for package r-bioc-limma :-(
R-bioc-multtest
??? missing short description for package r-bioc-multtest :-(
R-bioc-qvalue
??? missing short description for package r-bioc-qvalue :-(
R-cran-ade4
??? missing short description for package r-cran-ade4 :-(
R-cran-beeswarm
??? missing short description for package r-cran-beeswarm :-(
R-cran-pvclust
??? missing short description for package r-cran-pvclust :-(
R-cran-randomforest
??? missing short description for package r-cran-randomforest :-(
R-cran-rwave
??? missing short description for package r-cran-rwave :-(
R-cran-snowfall
??? missing short description for package r-cran-snowfall :-(
R-cran-waveslim
??? missing short description for package r-cran-waveslim :-(
R-cran-wavethresh
??? missing short description for package r-cran-wavethresh :-(

Official Debian packages with lower relevance

Science-statistics
??? missing short description for package science-statistics :-(

Packaging has started and developers might try the packaging code in VCS

Rstudio
GNU R IDE

Tools - Debian Med several tools

This metapackage will install tools for several purposes in health care. Currently it contains some simple programs for Personal Health.

Official Debian packages with high relevance

Cronometer
??? missing short description for package cronometer :-(
Cycle
??? missing short description for package cycle :-(
Edfbrowser
??? missing short description for package edfbrowser :-(
Galileo
??? missing short description for package galileo :-(
Hunspell-de-med
??? missing short description for package hunspell-de-med :-(
Hunspell-en-med
??? missing short description for package hunspell-en-med :-(
Nutsqlite
??? missing short description for package nutsqlite :-(
Pcalendar
??? missing short description for package pcalendar :-(
Python3-fitbit
??? missing short description for package python3-fitbit :-(
Quitcount
??? missing short description for package quitcount :-(
R-cran-fitbitscraper
??? missing short description for package r-cran-fitbitscraper :-(
R-cran-fitcoach
??? missing short description for package r-cran-fitcoach :-(
Wgerman-medical
??? missing short description for package wgerman-medical :-(
Workrave
??? missing short description for package workrave :-(

Official Debian packages with lower relevance

Entangle
??? missing short description for package entangle :-(
Goldencheetah
??? missing short description for package goldencheetah :-(
Mencal
??? missing short description for package mencal :-(
Oscar
??? missing short description for package oscar :-(

Debian packages in contrib or non-free

Mssstest
??? missing short description for package mssstest :-(

Packaging has started and developers might try the packaging code in VCS

Nut-nutrition
dietary nutrition analysis software
Pesco
Cognitive stimulation tool for elderly or cognitively impaired
Pondus
personal weight manager for GTK+2

Typesetting - Debian Med support for typesetting and publishing

This metapackage will install Debian packages that might be helpful for typesetting and publishing in medical care and structural biology.

Official Debian packages with high relevance

King
??? missing short description for package king :-(
Texlive-latex-extra
??? missing short description for package texlive-latex-extra :-(
Texlive-science
??? missing short description for package texlive-science :-(

Official Debian packages with lower relevance

Biber
??? missing short description for package biber :-(
Kbibtex
??? missing short description for package kbibtex :-(
R-cran-qqman
??? missing short description for package r-cran-qqman :-(

Packaging has started and developers might try the packaging code in VCS

Bibus
bibliographic database