Summary
Typesetting
Debian Med support for typesetting and publishing
This metapackage will install Debian packages that might be helpful
for typesetting and publishing in medical care and structural
biology.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Med
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Med mailing list
Links to other tasks
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Debian Med Typesetting packages
Official Debian packages with high relevance
king
interactive system for three-dimensional vector graphics
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Versions of package king |
Release | Version | Architectures |
jessie | 2.21.120420+dfsg-1 | all |
buster | 2.23.161103+dfsg1-3 | all |
bullseye | 2.23.161103+dfsg1-4 | all |
bookworm | 2.24+dfsg2-1 | all |
trixie | 2.24+dfsg2-2 | all |
sid | 2.24+dfsg2-2 | all |
stretch | 2.23.161103+dfsg1-1 | all |
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License: DFSG free
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KiNG (Kinemage, Next Generation) is an interactive system for
three-dimensional vector graphics. It supports a set of graphics
primitives that make it suitable for many types of graphs, plots, and
other illustrations; although its first use was to display
macromolecular structures for biophysical research. KiNG builds on Mage,
JavaMage, and the "kinemage" (kinetic image) concept to deliver a
full-featured Java application with a user-friendly interface and
integrated editing features. The KiNG jar file can be used within a web
page as a Java applet or Java object to promote easy access to kinemages
or coordinate files from a web browser.
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texlive-latex-extra
??? missing short description for package texlive-latex-extra :-(
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License: DFSG free
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texlive-science
??? missing short description for package texlive-science :-(
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Versions of package texlive-science |
Release | Version | Architectures |
sid | 2024.20240829-1 | all |
jessie | 2014.20141024-1 | all |
stretch | 2016.20170123-5 | all |
trixie | 2024.20240829-1 | all |
bookworm | 2022.20230122-4 | all |
buster | 2018.20190227-2 | all |
bullseye | 2020.20210202-3 | all |
Debtags of package texlive-science: |
field | biology, chemistry, electronics, mathematics, physics |
made-of | tex |
role | app-data |
science | publishing |
use | typesetting |
works-with | graphs, text |
works-with-format | tex |
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License: DFSG free
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Official Debian packages with lower relevance
biber
Much-augmented BibTeX replacement for BibLaTeX users
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Versions of package biber |
Release | Version | Architectures |
jessie | 1.9-3+deb8u1 | all |
buster | 2.12-2 | all |
bullseye | 2.16-1 | all |
bookworm | 2.18-1 | all |
trixie | 2.20-2 | all |
sid | 2.20-2 | all |
stretch | 2.7-2 | all |
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License: DFSG free
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The biblatex package by Philipp Lehman is becoming the definitive
citation management tool for LaTeX users. Biblatex has relied on the
venerable BibTeX program only for sorting and generating a very
generic .bbl file without any formatting instruction. Everything else
is taken care of by biblatex, which provides a powerful and flexible
macro interface for authors of citation styles.
Biber offers a large superset of BibTeX functionality for BibLaTeX
users. In addition it offers full UTF-8 (Unicode 6.0) capabilities,
fully customisable sorting, output to GraphViz to help visualise
complex crossrefs, support for remote data sources, structural
validation of the data against the (customisable) data model, and a
lot more.
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bibus
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Versions of package bibus |
Release | Version | Architectures |
stretch | 1.5.2-4 | all |
buster | 1.5.2+dfsg-1 | all |
jessie | 1.5.2-4 | all |
Debtags of package bibus: |
interface | x11 |
role | program |
science | bibliography, publishing |
uitoolkit | wxwidgets |
use | organizing, typesetting |
works-with-format | bib, odf |
x11 | application |
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License: DFSG free
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Bibus is a bibliographic database which has been developed with LibreOffice/
OpenOffice.org in mind. It can directly insert citations and format the
bibliographic index in an open OpenOffice.org Writer document. The main
features are
- hierarchical organization of the references with user-defined keys
- designed for multiuser-environments (share databases between users)
- a search engine supporting live queries
- on-line PubMed access
- import of PubMed (Medline), EndNote/Refer, RIS and BibTeX records.
Bibus will use an SQLite-database by default for storage (via the SQLite3
module available in Python >2.5). But it also supports MySQL-databases.
If you want to use a MySQL-database, make sure, that you have the
python-mysqldb package installed.
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jabref-plugin-oo
??? missing short description for package jabref-plugin-oo :-(
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Versions of package jabref-plugin-oo |
Release | Version | Architectures |
jessie | 2.10+ds-3 | all |
upstream | 5.15 |
Debtags of package jabref-plugin-oo: |
role | plugin |
science | bibliography |
suite | openoffice |
works-with-format | bib |
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License: DFSG free
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kbibtex
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Versions of package kbibtex |
Release | Version | Architectures |
trixie | 0.10.0-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.10.0-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 0.9.90-1.1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 0.9.90-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 0.8.1-1 | amd64,arm64,armhf,i386 |
stretch | 0.4-4 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 0.4-4 | amd64,armel,armhf,i386 |
Debtags of package kbibtex: |
interface | x11 |
role | program |
uitoolkit | qt |
use | editing |
works-with | dtp, text |
works-with-format | bib |
x11 | application |
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License: DFSG free
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An application to manage bibliography databases in the BibTeX format. KBibTeX
can be used as a standalone program, but can also be embedded into other KDE
applications (e.g. as bibliography editor into Kile).
KBibTeX can query online resources (e.g. Google scholar) via customizable
search URLs. It is also able to import complete datasets from NCBI Pubmed.
It also supports tagging references with keywords and manages references to
local files.
BibTeX files can be exported into HTML, XML, PDF, PS and RTF format using a
number of citation styles.
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r-cran-qqman
R package for visualizing GWAS results using Q-Q and manhattan plots
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Versions of package r-cran-qqman |
Release | Version | Architectures |
sid | 0.1.9+dfsg-1 | all |
buster | 0.1.4-6 | all |
bullseye | 0.1.4-7 | all |
bookworm | 0.1.8+dfsg-1 | all |
trixie | 0.1.9+dfsg-1 | all |
stretch | 0.1.2-1 | all |
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License: DFSG free
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qqman is an add-on package for the R statistical environment. This package
provides functions for visualizing Genome-Wide Association Studies (GWAS)
results using Manhattan plots and Quantile-Quantile plots.
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