Debian Med Physics packages

Based on BioSig library, this package provides command line tools, such as

• save2gdf: converter between different file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF, BDF, CWFB.
• biosig2gdf: converts biosig data files into GDF, to simplify parsing and loading by scripting languages (e.g. loadgdf.{py,r})
• rec2bin, bin2rec, heka2itx, save2aecg, save2scp: several converter tools based on save2gdf
• biosig_fhir: packs biosignal data into HL7/FHIR binary template file.
• physicalunits: converter for encoding and decoding of physical units according to ISO 11073-10101

GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc.

This package provides the tool shipped with the library (gdf_merger).

Octave is a (mostly MATLAB® compatible) high-level language, primarily intended for numerical computations. It provides a convenient command-line interface for solving linear and nonlinear problems numerically.

Octave can be dynamically extended with user-supplied C++ files.

CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

PAW is an interactive program providing interactive graphical presentation and statistical and mathematical analysis tools. It is designed to work on objects familiar to physicists such as histograms, event files (Ntuples), vectors, etc.

The program is linked statically against the CERN libraries on 64-bit architectures in order to function properly, as its design is not very 64-bit clean.

CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

This package includes Paw++, an interactive program for use in analysis and graphical presentation. Paw++ is the same program as PAW (in the "paw" package), but with a more user-friendly Motif-based GUI, compiled against Lesstif in Debian.

The program is linked statically against the CERN libraries on 64-bit architectures in order to function properly, as its design is not very 64-bit clean.

R は、統計計算とグラフィクスのためのシステムです。R は言語、グラフィックを サポートするランタイム環境、デバッガから構成され、一部のシステム関数に アクセスでき、スクリプトファイルに保存したプログラムを実行することができます。

R の設計は、Becker, Chambers & Wilks の S と、Sussman の Scheme に非常に 強く影響を受けています。外見的には S によく似ており、一方で基礎部分の実装と セマンティクスは Scheme に由来しています。

R の中核はインタープリタ式コンピュータ言語で、分岐、ループが可能で、関数を 使ったモジュール型プログラミングもできます。R のユーザから見える 関数のほとんどは、R で書かれています。R のコアの多くの関数と同様に、 効率を良くするために C, C++ または FORTRAN で書かれた手続きに 接続することができます。R のディストリビューションには、膨大な統計の手続きと、 その基礎となる応用数学の計算アルゴリズムが含まれています。さらに、多種にわたる データを表現するため、柔軟性のあるグラフィック環境を提供する多くの関数群が 存在します。

また、数千もの拡張「パッケージ」が CRAN (Comprehensive R Archive Network) から入手可能で、その多くが 'r-cran-' という名前の Debian パッケージにもなっています。

このパッケージは、バージョン 1.5.0 より前の、サイズの大きな r-base パッケージからの移行を容易にするメタパッケージです。一度インストールした後は、 このパッケージは安全に削除できます。apt-get は今後のアップグレード時に、 このコンポーネントを自動的にアップグレードします。必要であれば、 r-base-core パッケージだけをインストールするといったことができます。

BioSig はいくつかの生物医学データフォーマット (EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG,SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100, FAMOS, SigmaPLpro, TMS32 など) のファイルにアクセスするための ライブラリです。サポートされるファイルフォーマットの完全なリストについては、 http://pub.ist.ac.at/~schloegl/biosig/TESTED をご覧ください。

本パッケージはヘッダーファイルと静的ライブラリを提供します。

This package provides Octave bindings for BioSig library. Primary goal -- I/O interface to variety of biomedical file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF.

CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

This package includes example scripts for use by PAW or Paw++, and test scripts to make sure that the PAW or Paw++ programs behave correctly. You may run the examples and tests with the included paw-demos program.

This package provides Python3 bindings for BioSig library. Primary goal -- I/O interface to variety of biomedical file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF.

Multiple-tau correlation is computed on a logarithmic scale (less data points are computed) and is thus much faster than conventional correlation on a linear scale such as numpy.correlate

An online reference is available at http://paulmueller.github.io/multipletau

GATE incorporates the Geant4 libraries in a modular, versatile, and scripted simulation toolkit which is adapted to the field of nuclear medicine both in PET (Positron Emission Tomography) and SPECT (Single Photon Emission Computer Tomography). It allows the accurate description of time-dependent phenomena such as source or detector movement and source decay kinetics. The ability to synchronize all time-dependent components allows a coherent description of the acquisition process. It makes it possible to perform realistic simulations of data acquisitions in time.

OpenViBE enables to design, test and use Brain-Computer Interfaces (BCI). OpenViBE is a software for real-time neurosciences (that is, for real-time processing of brain signals). It can be used to acquire, filter, process, classify and visualize brain signals in real time.