PAN Blend Project
Summary
tomography
PAN Blend tomography

This metapackage will install all PAN Blend tomography packages.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for PAN Blend to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the PAN Blend mailing list

Links to other tasks

PAN Blend tomography packages

Official Debian packages with high relevance

libufo-bin
Library for high-performance, GPU-based computing - tools
Versions of package libufo-bin
ReleaseVersionArchitectures
bullseye0.16.0.52.gbd831ab-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
stretch0.13.0-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
trixie0.16.0.52.gbd831ab-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
sid0.16.0.52.gbd831ab-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
buster0.15.1-1amd64,arm64,armhf,i386
bookworm0.16.0.52.gbd831ab-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
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License: DFSG free
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The UFO data processing framework is a C library suited to build general purpose streams data processing on heterogeneous architectures such as CPUs, GPUs or clusters. It is extensively used at the Karlsruhe Institute of Technology for Ultra-fast X-ray Imaging (radiography, tomography and laminography).

A gobject-instrospection binding is also provided to write scripts or user interfaces.

This package contains binaries to run JSON descriptions of task graphs.

mayavi2
scientific visualization package for 2-D and 3-D data
Versions of package mayavi2
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bookworm4.8.0-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye4.7.1-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie4.8.1-3amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
sid4.8.1-4amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
stretch4.5.0-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
buster4.5.0-1amd64,arm64,armhf,i386
jessie4.3.1-3.1amd64,armel,armhf,i386
Debtags of package mayavi2:
develexamples, lang:python
roleprogram
useviewing
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MayaVi2 is a cross-platform tool for 2-D and 3-D scientific data visualization. Its features include:

  • Visualization of scalar, vector and tensor data in 2 and 3 dimensions
  • Easy scriptability using Python
  • Easy extendability via custom sources, modules, and data filters
  • Reading several file formats: VTK (legacy and XML), PLOT3D, etc.
  • Saving of visualizations
  • Saving rendered visualization in a variety of image formats.

MayaVi2 has been designed with scriptability and extensibility in mind. While the mayavi2 application is usable by itself, it may be used as an Envisage plugin which allows it to be embedded in user applications natively. Alternatively, it may be used as a visualization engine for any application.

This package also provides TVTK, which wraps VTK objects to provide a convenient, Pythonic API, while supporting Traits attributes and NumPy/SciPy arrays. TVTK is implemented mostly in pure Python, except for a small extension module.

Screenshots of package mayavi2
paraview
병렬 시각화 어플리케이션
Versions of package paraview
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jessie4.1.0+dfsg+1-1amd64,armel,armhf,i386
stretch5.1.2+dfsg1-2amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
buster5.4.1+dfsg4-3.1amd64,arm64,armhf,i386
sid5.11.2+dfsg-6amd64,arm64,i386,ppc64el,riscv64,s390x
bookworm5.11.0+dfsg-1amd64,arm64,i386,ppc64el,s390x
bullseye5.9.0-2amd64,arm64,i386,mips64el,ppc64el,s390x
upstream5.12.0
Debtags of package paraview:
roleprogram
uitoolkitqt
useviewing
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ParaView는 크기가 작은것 부터 매우 큰 것까지 매우 다양한 데이타 세트를 시각 화하도록 설계된 오픈소스, 멀티 플랫폼 어플리케이션입니다. ParaView 프로젝트 의 목적은 다음과 같습니다.

  • 오픈소스, 멀티 플랫폼 시각화 어플리케이션 개발.
  • 대형 데이타 세트 처리를 위한 분산 계산 모델 지원.
  • 개방적이며, 유연하고, 직관적인 사용자 인터페이스 생성
  • 오픈 표준을 기반으로 확장가능한 아키텍쳐 개발.

ParaView는 분산 및 공유 메모리의 병렬 및 싱글 프로세스 시스템에서 실행되며, Windows, Mac OS X, Linux 그리고 여러 유닉스 워크스테이션, 클러스터 및 슈퍼 컴퓨터에서 성공적으로 테스트가 완료되었습니다. 내부를 보면, ParaView는 데이 타 프로세싱 및 렌더링 엔진으로 시각화 툴킷을 사용하며, Qt를 사용해서 개발된 사용자 인터페이스를 가지고 있습니다.

python3-skimage
Python 3 modules for image processing
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sid0.23.1-3all
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sid0.23.2-1all
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scikit-image is a collection of image processing algorithms for Python. It performs tasks such as image loading, filtering, morphology, segmentation, color conversions, and transformations.

This package provides the Python 3 module.

Please cite: Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, Tony Yu and the scikit-image contributors: scikit-image: Image processing in Python (eprint) PeerJ 2:e453 (2014)
ufo-filters
Set of plugins for ufo-core - runtime
Versions of package ufo-filters
ReleaseVersionArchitectures
sid0.16.0.159.g483ce16-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
trixie0.16.0.159.g483ce16-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
bookworm0.16.0.159.g483ce16-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye0.16.0.159.g483ce16-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
buster0.14.1+dfsg1-2amd64,arm64,armhf,i386
stretch0.13.0+dfsg1-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
upstream0.16.0.172.g6f43afc
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License: DFSG free
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The UFO data processing framework is a C library suited to build general purpose streams data processing on heterogeneous architectures such as CPUs, GPUs or clusters. It is extensively used at the Karlsruhe Institute of Technology for Ultra-fast X-ray Imaging (radiography, tomography and laminography).

This package contains average',backproject', bin',blur', buffer',calculate', camera',clip', contrast',crop', denoise',duplicate', fftmult',fft', filter',flatten', flip',forwardproject', gemm',ifft', interpolate',loop', measure',merge', metaballs',monitor', null',opencl', ordfilt',pad', read',reduce', refeed',replicate', rescale',ringwriter', sleep',slice', stack',stdin', stdout',subtract', transpose',write' and `zeropad' plugins

Debian packages in contrib or non-free

python3-pyhst2-cuda
Python High Speed Tomographic reconstruction
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PyHST is a Python program for Tomographic data reconstruction based on direct filtered back-projection algorithm

This is the CUDA version

No known packages available

astra-toolbox
A high-performance GPU MATLAB toolbox for 2D and 3D tomography
License: GPL-3
Debian package not available
freeart
SART reconstruction algorithm
License: LGPL
Debian package not available
imagej-pluggins-tomo
?
License: ?
Debian package not available
pyastra-toolbox
python binding for the astra-toolbox
License: GPL-3
Debian package not available

The PyASTRAToolbox is a Python interface to the ASTRA Toolbox, a tomography toolbox based on high-performance GPU primitives for 2D and 3D tomography.

The Python interface aims to expose all features of the ASTRA toolbox to Python, providing a high-performance tomography toolbox for Python users.

rabbitct
backprojection performance-comparison
License: GPL2+
Debian package not available

RabbitCT provides an open platform for worldwide performance-comparison of backprojection implementations on different architectures using one specific, clinical, high resolution C-arm CT dataset of a rabbit. This includes a sophisticated benchmark interface, a prototype implementation in C++, and image quality measures.

tomographie-preexperiment-data-collector
gather all information from the user that can be
License: GPL2+
Debian package not available

provided prior to the tomography experiment.

tomopy
tomographic data processing and image reconstruction toolbox
License: BSD-3
Debian package not available

TomoPy is a Python toolbox to perform tomographic data processing and image reconstruction tasks at the Advanced Photon Sourc

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