Debian Science Project
Summary
Psychophysics
Debian Science - pakker for psykofysik

Denne metapakke vil installere Debianpakker, som kan være nyttige for udførsel af eksperimenter relateret til fysisk stimuli og deres fysiologiske effekter.

Udvalget af pakker er målrettet programmer for stimuli. For yderligere programmer relateret til analyse af de indhentede data se science-neuroscience-cognitive, med-imaging afhængig af domænanvendelsen. Kig derudover i science-bci da disse pakker ofte tilbyder en fuldstændig ramme inklusiv stimulilevering.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

Links to other tasks

Debian Science Psychophysics packages

Official Debian packages with high relevance

Libfreenect-dev
Bibliotek til at tilgå Kinect-enhed - udviklingsfiler
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jessie0.2.0+dfsg-2amd64,armel,armhf,i386
stretch0.5.3-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
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sid0.5.3-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
upstream0.6.1
Debtags of package libfreenect-dev:
devellang:c, lang:c++, library
hardwarecamera, usb
roledevel-lib
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Libfreenect er et bibliotek for flere platforme, som tilbyder de nødvendige grænseflader for at aktivere, initialisere og kommunikere data med Kinect-udstyr. I øjeblikket understøtter biblioteket adgang til RGB og dybe videostrømme, motorer, accelerometer og LED og tilbyder binding i forskellige sprog (C++, Python ...).

Dette bibliotek er komponenten på lavt niveau for OpenKinect-projektet, som er et fællesskab med interesse i at gøre brug af Xbox Kinect-udstyr på pc'er og andre enheder.

Dette er udviklingspakken indeholdende bibliotekerne og teksthovederne for programudvikling med libfreenect.

Octave-psychtoolbox-3
Værktøjskasse for synsforskning - Octavebindinger
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Psychophysics Toolbox Version 3 (PTB-3) er et frit sæt af Matlab- og GNU/Octave-funktioner for visionsforskning. Den gør det nemt at kombinere og vise præcist kontrollerede visuelle og hørbare stimuli og interagere med observatøren.

Psychophysics Toolbox-grænsefladerne mellem Matlab eller Octave og computerudstyret. Psychtoolbox's rutiner tilbyder adgang til skærmframebufferen og farveopslagstabellen, tillader synkronisering med den lodrette retrace, understøtter millisekund timing, tillader adgang til OpenGL-kommandoer og faciliterer indsamlingen af observatørsvar. Ancillary-rutiner understøtter gængse krav såsom farverumstransformationer og algoritmen for QUEST-tærskelsøgning.

Se også http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for yderligere information om systemers finjustering og opstartskonfiguration.

Denne pakke indeholder bindinger for Octave.

Psychopy
Miljø for oprettelse af psykologistimuli i Python
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PsychoPy tilbyder et miljø for oprettelse af psykologiske stimuli, der bruger skriptsproget Python. Det kombinerer de grafiske fordele i OpenGL med nem Pythonsyntaks for at give psykofysik en fri og simpel stimulipræsentation og kontrolpakke.

Formålet er at tilbyde, for travle forskere, værktøjer til at kontrollere timing og vinduesopsætning og et simpelt sæt af på forhånd pakkede stimuli og metoder. PsychoPy indeholder.

  • IDE GUI for kodning i et funktionsrigt skriptsprog (Python)
  • Builder GUI for hurtig udvikling af stimuleringssekvenser
  • Brug af udstyrsaccelereret grafik (OpenGL)
  • Integration med Spectrascan PR650 for nem skærmkalibrering
  • Simple rutiner for staircase og konstant stimulieksperimentelle metoder samt kurvetilpasning og bootstrapping
  • Simple (eller komplekse) grafiske brugerflader via wxPython
  • Nemme grænseflader til joystick, mus, lydkort etc. via PyGame
  • Videoafspilning (MPG, DivX, AVI, QuickTime etc.) som stimuli
The package is enhanced by the following packages: python-pyoptical
Please cite: Jonathan W.Peirce: PsychoPy—Psychophysics software in Python. Journal of Neuroscience Methods 162(1-2):8-13 (2007)
Screenshots of package psychopy

Official Debian packages with lower relevance

Opensesame
Grafisk eksperimentbygger for de sociale videnskaber
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Dette grafiske miljø tilbyder en nem at anvende, peg og klik-grænseflade til oprettelse af psykologiske eksperimenter. Udover en funktionsrig skitseblok for oprettelse af visuelle stimuli, har OpenSesame en sampler og en synthesizer til lydafspilning. For mere komplekse opgaver understøtter OpenSesame Pythonskript via et indbygget redigeringsprogram med syntaksfremhævelse.

Please cite: Mathôt, S., & Theeuwes, J.: OpenSesame (Version 0.22) [Computer software and manual] (Retrieved December 18, 2010)
Screenshots of package opensesame
Science-neuroscience-cognitive
Debian Science - pakker for kognitiv neurovidenskab
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rolemetapackage
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Denne metapakke installerer Debianpakker, som kan være nyttige for videnskabsfolk, der udfører kognitiv neurovidenskabelig forskning. Dette omhandler den fulde forskningsproces fra udførelse af psykofysiske eksperimenter, over dataindhentelse og analyse, til visualisering og opsætning af videnskabelige resultater.

Udvalget af pakker er målrettet anvendelsen af analyseteknikker. Metodeudviklere henvises til metapakkerne science-statistics, science-imageanalysis, science-numericalcomputation, med-imaging og med-imaging-dev for en række yderligere programmer, som kan være nyttige i konteksten kognitiv neurovidenskab.

Packaging has started and developers might try the packaging code in VCS

Debruijn
De Bruijn cycle generator
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VCS1.6-2all
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License: BSD-4-clause
Debian package not available
Git
Version: 1.6-2

Stimulus counter-balance is important for many experimental designs. This command-line software creates De Bruijn cycles, which are pseudo-random sequences with arbitrary levels of counterbalance. "Path-guided" de Bruijn cycles may also be created. These sequences encode a hypothesized neural modulation at specified temporal frequencies, and have enhanced detection power for BOLD fMRI experiments.

Unofficial packages built by somebody else

Psytoolkit
programming and running psychological experiments
License: GPL-3+
Language: Ruby

Psytoolkit offers

  • Scripting language designed for psychological experiments:
  • Structure designed for experiments (tasks/trials/trial lists/random selection/blocks).
  • Use of bitmaps (png,jpeg,tiff,and many more).
  • Use of MPEG videos.
  • Read from keyboard, mouse, and external devices.
  • Voicekey support via IoLab device
  • Easy programming of parallel port and advanced IO cards.
  • Use of variables.
  • Conditional expressions (if/then/while).
  • Easy interfacing with statistical software R for online feedback to participants.
  • Easy interfacing with C language.
  • It is easy to use.
  • Easy functions for visual and auditory stimulus presentation.
  • Precise timing of stimulus presentation and data collection.
  • Can be used as scripting language, but also comes with a C-library.
  • Comes with a questionnaire presenter psyquest
  • Online Documentation.
Remark of Debian Science team: Depends on libhid removed from Debian due to needed TLC

No known packages available but some record of interest (WNPP bug)

Pebl - wnpp
platform for psychology experiments
License: GPL
Debian package not available
Language: C++

PEBL (Psychology Experiment Building Language) is a system designed for creating psychology and neuroscience experiments and tests. It offers a simple programming language tailor-made for creating and conducting many standard experiments.

Please cite: Mueller, S. T.: The PEBL Manual (2011)
Visionegg - wnpp
Python library for 2D/3D visual stimulus generation
License: LGPL
Debian package not available

The Vision Egg is a programming library that uses standard, inexpensive computer graphics cards to produce visual stimuli for vision research experiments.

No known packages available

Nrec
neurological stimulation, data acquisition and experiment control
License: GPL
Debian package not available
Language: C++

Nrec , developed by Friedemann Bunjes and Jan Gukelberger at the Neurology of Tübingen University, is a package for stimulation, data acquisition and experiment control in the flavour of cognitive fMRI research, which has been expanded to include flexible biosignal acquisition and sensory stimulation. It produces Matlab-readable files and generally puts an emphasis on standards like using the comedi Linux data acquisition library, OpenGL, XML parameter file format and hdf5 data storage files format.

Psychlops
License: GPL
Debian package not available
Language: C++

Psychlops is a free C++ library to offer the easy way to develop a demonstration of various types of visual stimulus used in the Vision science.

Binary builds are available only for OS X and Windows. Sources available from sf's SVN: http://sourceforge.jp/projects/psychlops/svn/view/cpp/

Tscope
C/C++ experiment programming library for cognitive scientists
License: GPL
Debian package not available
Language: C

Tscope is a C/C++ experiment programming library for cognitive scientists. It provides functions for graphics, sound, timing, randomization and response registration.

Please cite: Stevens, M., Lammertyn, J., Verbruggen, F., & Vandierendonk, A.: Tscope: A C library for programming cognitive experiments on the MS Windows platform (2006)
Remark of Debian Science team: Primarily targeting Windows platform, provides some functionality on Linux
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