Debian Science Project
Summary
Meteorology
Debian Science Meteorology packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Meteorology and Climate.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

Links to other tasks

Debian Science Meteorology packages

Official Debian packages with high relevance

Aweather
Advanced Weather Monitoring Program
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AWeather is an advanced weather program which is designed to be used by weather enthusiasts. AWeather is not a weather dockapp that simply displays a pre-computed forecast. It is designed to be an easy-to-use program that integrates a variety of weather data in a simple unified interface. AWeather currently supports radar and weather alerts from the United State National Weather Service.

Screenshots of package aweather
Cdftools
Diagnostic tools for NEMO netCDF output
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CDFTOOLS is a diagnostic package written in fortran 90 for the analysis of NEMO model output in the frame of the DRAKKAR project. NEMO (Nucleus for European Modelling of the Ocean) is a state-of-the-art modeling framework for oceanographic research, operational oceanography seasonal forecast and climate studies.

Cdo
Climate Data Operators
Maintainer: Alastair McKinstry
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Climate Data Operators are a collection of command line Operators to manipulate and analyse Climate model Data. Supported data formats are GRIB, netCDF, SERVICE, EXTRA and IEG. There are more than 400 operators available.

Cmor-tables
MIP tables for the Climate Model Output Rewriter library
Maintainer: Alastair McKinstry
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This package contains tables for use with CMOR that describe the variables and format of data needed.

CMOR software uses these tables to verify that output is valid.

Cylc
Workflow scheduler
Maintainer: Alastair McKinstry
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Cylc ("silk") is a suite engine and meta-scheduler that specializes in suites of cycling tasks for weather forecasting, climate modeling, and related processing (it can also be used for one-off workflows of non-cycling tasks, which is a simpler problem).

Dballe
Database for punctual meteorological data (Command line tools)
Maintainer: Enrico Zini
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DB-All.e is a fast on-disk database where meteorological observed and forecast data can be stored, searched, retrieved and updated.

This framework allows one to manage large amounts of data using its simple Application Program Interface, and provides tools to visualise, import and export in the standard formats BUFR, AOF and CREX.

The main characteristics of DB-ALL.e are:

  • Fortran, C, C++ and Python APIs are provided.
  • To make computation easier, data is stored as physical quantities, that is, as measures of a variable in a specific point of space and time, rather than as a sequence of report.
  • Internal representation is similar to BUFR and CREX WMO standard (table code driven) and utility for import and export are included (generic and ECMWF template).
  • Representation is in 7 dimensions: latitude and longitude geographic coordinates, table driven vertical coordinate, reference time, table driven observation and forecast specification, table driven data type.
  • It allows one to store extra information linked to the data, such as confidence intervals for quality control.
  • It allows one to store extra information linked to the stations.
  • Variables can be represented as real, integer and characters, with appropriate precision for the type of measured value.
  • It is based on physical principles, that is, the data it contains are defined in terms of homogeneous and consistent physical data. For example, it is impossible for two incompatible values to exist in the same point in space and time.
  • It can manage fixed stations and moving stations such as airplanes or ships.
  • It can manage both observational and forecast data.
  • It can manage data along all three dimensions in space, such as data from soundings and airplanes.
  • Report information is preserved. It can work based on physical parameters or on report types.
Ecaccess
clients to access ECMWF facilities
Maintainer: Alastair McKinstry
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ecaccess is a suite of client tools to enable access to the computing and data archive facilities of the European Centre for Medium-Range Forecasts (ECMWF).

Strict authentication is performed in a uniform way using SecurID cards and standard (X509) certificates. SSL is used to guarantee the integrity of the application data, the transferred jobs and the monitoring information.

Fcm
Flexible Configuration Manager
Maintainer: Alastair McKinstry
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FCM is a set of tools for managing and building source code. FCM uses Subversion for code management but defines a common process and naming convention to simplify usage. It adds a layer on top of Subversion to provide a more natural and user-friendly interface.

FCM features a powerful build system, mainly aimed at building modern Fortran software applications.

Ferret-vis
Interactive data visualization and analysis environment
Maintainer: Alastair McKinstry
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Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and meteorologists analyzing large and complex gridded data sets. It can transparently access extensive remote Internet data bases using OPeNDAP (formerly known as DODS)

Ferret has a Mathematica-like flexibility, geophysical formatting, "intelligent" connection to its data base, memory management for very large calculations, and symmetrical processing in 4 dimensions. It can work on both gridded and non-gridded datasets.

Flexpart
Particle Dispersion model for tracing air transport phenomena
Maintainer: Alastair McKinstry
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The FLEXPART model is a Lagrangian Particle Dispersion Model developed at the Norwegian Institute for Air Research in the Department of Atmospheric and Climate Research. The model development team consists of Andreas Stohl (who originally wrote FLEXPART), Sabine Eckhardt, Harald Sodemann, and John Burkhart.

Flextra
Trajectory model for tracing air transport phenomena
Maintainer: Alastair McKinstry
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Trajectory models are important tools for studying transport phenomena in the atmosphere. In the environmental sciences, they are often used to establish source-receptor relationships of air pollutants.

FLEXTRA can be used to calculate different types of forward or backward trajectories, and has facilities to estimate the uncertainty of trajectories. It is specifically designed to compute long time sequences of trajectories for many receptor locations.

FLEXTRA may be used with the Metview meteorological workstation to visualize trajectories.

Grads
Grid Analysis and Display System for earth science data
Maintainer: Alastair McKinstry
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The Grid Analysis and Display System (GrADS) is an interactive desktop tool that is used for easy access, manipulation, and visualization of earth science data. The format of the data may be either binary, GRIB, NetCDF, or HDF-SDS (Scientific Data Sets). GrADS has been implemented worldwide on a variety of commonly used operating systems and is freely distributed over the Internet.

GrADS uses a 4-Dimensional data environment: longitude, latitude, vertical level, and time. Data sets are placed within the 4-D space by use of a data descriptor file. GrADS interprets station data as well as gridded data, and the grids may be regular, non-linearly spaced, gaussian, or of variable resolution. Data from different data sets may be graphically overlaid, with correct spatial and time registration. Operations are executed interactively by entering FORTRAN-like expressions at the command line. A rich set of built-in functions are provided, but users may also add their own functions as external routines written in any programming language.

Data may be displayed using a variety of graphical techniques: line and bar graphs, scatter plots, smoothed contours, shaded contours, streamlines, wind vectors, grid boxes, shaded grid boxes, and station model plots. Graphics may be output in PostScript or image formats. GrADS provides geophysically intuitive defaults, but the user has the option to control all aspects of graphics output.

GrADS has a programmable interface (scripting language) that allows for sophisticated analysis and display applications. Use scripts to display buttons and dropmenus as well as graphics, and then take action based on user point-and-clicks. GrADS can be run in batch mode, and the scripting language facilitates using GrADS to do long overnight batch jobs.

Libdap-bin
Binaries for the libdap Data Access Protocol library
Maintainer: Alastair McKinstry
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OPeNDAP provides software that allows you to access data over the internet, from programs that weren't originally designed for that purpose, as well as some that were. While OPeNDAP is the original developer of the Data Access protocol which its software uses, many other groups have adopted DAP and provide compatible clients, servers and software development kits.

This package contains the 'getdap' client binary.

Libdap-doc
Documentation for the libdap Data Access Protocol library
Maintainer: Alastair McKinstry
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OPeNDAP provides software that allows you to access data over the internet, from programs that weren't originally designed for that purpose, as well as some that were. While OPeNDAP is the original developer of the Data Access protocol which its software uses, many other groups have adopted DAP and provide compatible clients, servers and software development kits.

Libemos-bin
ECMWF Interpolation Library - binaries
Maintainer: Alastair McKinstry
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The Interpolation library (EMOSLIB) includes Interpolation software and GRIB, BUFR, CREX encoding/decoding routines. It is used by the ECMWF meteorological archival and retrieval system (MARS) and also by the ECMWF graphics package MetView.

This package provide bufr-* and other tools

Magics++
Executables for the magics++ library
Maintainer: Alastair McKinstry
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Magics++ is the latest generation of the ECMWF's Meteorological plotting software MAGICS. Although completely redesigned in C++, it is intended to be as backwards-compatible as possible with the Fortran interface. Besides its programming interfaces (Fortran and C), Magics++ offers MagML, a plot description language based on XML aimed at automatic web production.

This package contains the MagcML binary that may be used with magics++.

Makedepf90
Fortran-90 dependency processor for Makefiles
Maintainer: Alastair McKinstry
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Makedepf90 is a program for automatic creation of Makefile dependency lists for Fortran source code. Makedepf90 supports MODULE:s, INCLUDE:s, cpp #include:s, f90ppr $include:s and coco ??include:s and set-files.

The original idea was to provide the same functionality for Fortran as

   gcc -MM *.c

does for C.

Metview
Interactive data visualization and analysis environment,
Maintainer: Alastair McKinstry
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Metview has been designed as a flexible, modular and extendible system able to accommodate the evolving needs of the user. The system is based on the ECMWF standards for graphics (Magics) and data access (MARS) but can also access locally stored data. The user interface is based on Motif and Qt. Metview is a fully distributed system where modules can run on different workstations and servers.

Metview is a cooperative project between ECMWF and INPE/CPTEC, Brazil. ECMWF has also been assisted by a staff member of Météo-France.

Nco
Command-line operators to analyze netCDF files
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NCO is a suite of programs known as operators. The operators are stand-alone, command-line programs executable in a POSIX shell. Operators take one or more netCDF files as input, perform operations (e.g., averaging, hyperslabbing), and produce a netCDF output file. NCO was originally designed to manipulate and analyze climate data, though it works on any netCDF format datasets.

Please cite: Charles S. Zender: Analysis of Self-describing Gridded Geoscience Data with netCDF Operators (NCO). (eprint) Environmental Modelling & Software 23(10):1338-1342 (2008)
Ncview
X11 visual browser for NetCDF format files
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You would use ncview to get a quick and easy, push-button look at your NetCDF files. You can view simple movies of the data, view along various dimensions, take a look at the actual data values, change color maps, invert the data and other simple visual operations.

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Python-cdo
Python module for Climate Data Operators
Maintainer: Alastair McKinstry
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Climate Data Operators are a collection of command line Operators to manipulate and analyse Climate model Data. Supported data formats are GRIB, netCDF, SERVICE, EXTRA and IEG. There are more than 400 operators available. This package provides a Python wrapper for CDO.

Python-cmor
Python interface to CMOR
Maintainer: Alastair McKinstry
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This is a Python interface to CMOR, the Climate Model Output Rewriter.

Python-drslib
Library for processing the CMIP5 Data Reference Syntax
Maintainer: Alastair McKinstry
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CMIP5 is the Climate Model Intercomparison Project5. This library supports the generation of paths and filenames corresponding to version 0.28 of thei CMIP Data Reference Syntax. It includes tools for converting from previous CMIP3 forms.

Python-ferret
Python wrapper for the Ferret visualization and analysis environment
Maintainer: Alastair McKinstry
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Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and meteorologists analyzing large and complex gridded data sets. It can transparently access extensive remote Internet data bases using OPeNDAP (formerly known as DODS)

This is the Python wrapper for Ferret

Python-grib
Python module for reading and writing GRIB files
Maintainer: Alastair McKinstry
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Python module for reading and writing GRIB (editions 1 and 2) files. GRIB is the World Meterological Organization standard for distributing gridded data. The module is a Python interface to the GRIB API C library from the European Centre for Medium-Range Weather Forecasts (ECMWF).

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Python-gsw
Python implementation of the Thermodynamic Equation of Seawater
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This package implements the TEOS-10 Equation of State for seawater. TEOS-10 is based on a Gibbs function formulation from which all thermodynamic properties of seawater (density, enthalpy, entropy sound speed, etc.) can be derived in a thermodynamically consistent manner. TEOS-10 was adopted by the Intergovernmental Oceanographic Commission at its 25th Assembly in June 2009 to replace EOS-80 as the official description of seawater and ice properties in marine science.

For further information, see http://www.teos-10.org/

Python-iapws
Python implementation of the international APWS-IF97 steam tables
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This is a Python class to model a state for liquid water or steam with the Industrial Formulation IAPWS-IF97.

Further information on the standard is available at http://www.iapws.org

Python-metaconfig
Python ConfigParser bootstrapping library
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Metaconfig is a library for centralising Python's ConfigParser files. It is inspired by the logging module where it is increadibly easy to start writing code that depends on logging whilst deferring how log messages will be handled until later.

Python-netcdf
netCDF interface for Python
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A Python module to access netCDF files. NetCDF (network Common Data Form) is an interface for scientific data access and a freely-distributed software library that provides an implementation of the interface.

Python-sphere
Python interface to the spherepack scientific library.
Maintainer: Alastair McKinstry
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This is a python interface to spherepack, a library for geophysical processes.

Python3-cdo
Python3 module for Climate Data Operators
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Climate Data Operators are a collection of command line Operators to manipulate and analyse Climate model Data. Supported data formats are GRIB, netCDF, SERVICE, EXTRA and IEG. There are more than 400 operators available. This package provides a Python3 wrapper for CDO.

Python3-cmor
Python3 interface to CMOR
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This is a Python3 interface to CMOR, the Climate Model Output Rewriter.

Python3-drslib
Library for processing the CMIP5 Data Reference Syntax (Python3)
Maintainer: Alastair McKinstry
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CMIP5 is the Climate Model Intercomparison Project5. This library supports the generation of paths and filenames corresponding to version 0.28 of thei CMIP Data Reference Syntax. It includes tools for converting from previous CMIP3 forms.

Python3-eccodes
Python module for the ECMWF GRIB API library
Maintainer: Alastair McKinstry
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ecCodes is the ECMWF encoding/decoding software for GRIB and BUFR.

This is a Python wrapper for the GRIB API library.

ECMWF is the European Centre for Medium-Range Weather Forecasts.

Python3-ferret
Python3 wrapper for the Ferret visualization and analysis environment,
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Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and meteorologists analyzing large and complex gridded data sets. It can transparently access extensive remote Internet data bases using OPeNDAP (formerly known as DODS)

This is the Python3 wrapper for Ferret

Python3-gsw
Python 3 implementation of the Thermodynamic Equation of Seawater
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This package implements the TEOS-10 Equation of State for seawater. TEOS-10 is based on a Gibbs function formulation from which all thermodynamic properties of seawater (density, enthalpy, entropy sound speed, etc.) can be derived in a thermodynamically consistent manner. TEOS-10 was adopted by the Intergovernmental Oceanographic Commission at its 25th Assembly in June 2009 to replace EOS-80 as the official description of seawater and ice properties in marine science.

For further information, see http://www.teos-10.org/

Python3-iapws
Python3 implementation of the international APWS-IF97 steam tables
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This is a Python3 class to model a state for liquid water or steam with the Industrial Formulation IAPWS-IF97.

Further information on the standard is available at http://www.iapws.org

Python3-metaconfig
Python ConfigParser bootstrapping library (Python3)
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Metaconfig is a library for centralising Python's ConfigParser files. It is inspired by the logging module where it is increadibly easy to start writing code that depends on logging whilst deferring how log messages will be handled until later.

Python3-netcdf4
Python 3 interface to the netCDF4 (network Common Data Form) library
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NetCDF version 4 has many features not found in earlier versions of the library and is implemented on top of HDF5. This module can read and write files in both the new netCDF 4 and the old netCDF 3 format, and can create files that are readable by HDF5 clients. The API is modelled after Scientific.IO.NetCDF, and should be familiar to users of that module.

Most new features of netCDF 4 are implemented, such as multiple unlimited dimensions, groups and zlib data compression. All the new numeric data types (such as 64 bit and unsigned integer types) are implemented. Compound and variable length (vlen) data types are supported, but the enum and opaque data types are not. Mixtures of compound and vlen data types (compound types containing vlens, and vlens containing compound types) are not supported.

This package contains the netCDF 4 module for Python 3.

Python3-sphere
Python3 interface to the spherepack scientific library.
Maintainer: Alastair McKinstry
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This is a python3 interface to spherepack, a library for geophysical processes.

Vistrails
Science visualisation workflow toolkit
Maintainer: Alastair McKinstry
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VisTrails is an open-source scientific workflow and provenance management system developed at the University of Utah that provides support for data exploration and visualization. Whereas workflows have been traditionally used to automate repetitive tasks, for applications that are exploratory in nature, such as simulations, data analysis and visualization, very little is repeated---change is the norm. As an engineer or scientist generates and evaluates hypotheses about data under study, a series of different, albeit related, workflows are created while a workflow is adjusted in an interactive process. VisTrails was designed to manage these rapidly-evolving workflows.

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Zygrib
Weather data visualization, GRIB file viewer
Maintainer: Alastair McKinstry
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This application, written with the Qt toolkit, enables:

  • Visualisation of meteo data from files in GRIB Format 1
  • Automatic GRIB data download
  • Automatic Download from IAC (fleetcode) Data
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Official Debian packages with lower relevance

Gerris
Fluid Flow Solver
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Gerris is a system for the solution of the partial differential equations describing fluid flow.

A brief summary of its main (current) features:

  • Solves the time-dependent incompressible variable-density Euler, Stokes or Navier-Stokes equations
  • Adaptive mesh refinement: the resolution is adapted dynamically to the features of the flow
  • Entirely automatic mesh generation in complex geometries
  • Second-order in space and time
  • Unlimited number of advected/diffused passive tracers
  • Flexible specification of additional source terms
  • Portable parallel support using the MPI library
  • Volume of Fluid advection scheme for interfacial flows

This package has MPI support built in.

Gnudatalanguage
Free IDL compatible incremental compiler
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GNU Data Language (GDL) is a free IDL (Interactive Data Language) compatible incremental compiler. It has full syntax compatibility with IDL 7.1. IDL is a registered trademark of ITT Visual Information Solutions. From IDL 8.0, the following language elements are supported:

  • FOREACH loop
  • negative array indices
  • garbage collection pointers and objects
  • call methods on an object using "." (e. g. object.aMemberProcedure,arg1)

The file input output system is fully implemented. GUI support (widgets) is officially provided, but it's not complete yet.

This package contains the main commandline and interpreter frontend.

Please cite: A. Coulais, M. Schellens, J. Gales, S. Arabas, M. Boquien, P. Chanial, P. Messmer, D. Fillmore, O. Poplawski, S. Maret, G. Marchal, N. Galmiche and T. Mermet: Status of GDL - GNU Data Language. (eprint) Astronomical Data Analysis Software and Systems XIX 434:187 (2010)
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Octave-octcdf
NetCDF data files interface for Octave
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This package provides functions to work with NetCDF data files in Octave, a numerical computation software. This package provides a function (netcdf) that creates and reads NetCDF files and writes to a NetCDF file (ncdump) among others.

This Octave add-on package is part of the Octave-Forge project.

Paraview
Parallel Visualization Application
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ParaView is an open-source, multi-platform application designed to visualize data sets of size varying from small to very large. The goals of the ParaView project include the following:

* Develop an open-source, multi-platform visualization application.
* Support distributed computation models to process large data sets.
* Create an open, flexible, and intuitive user interface.
* Develop an extensible architecture based on open standards.

ParaView runs on distributed and shared memory parallel as well as single processor systems and has been successfully tested on Windows, Mac OS X, Linux and various Unix workstations, clusters and supercomputers. Under the hood, ParaView uses the Visualization Toolkit as the data processing and rendering engine and has a user interface written using Qt.

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Python-dap
DAP (Data Access Protocol) client and server
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This is a Python implementation of the Data Access Protocol, a scientific protocol for data access developed by the OPeNDAP team (http://opendap.org). This implementation is developed from scratch, following the latest specification of the protocol (DAP 2.0 Draft Community Standard 2005/04/27) and based on experience with OPeNDAP servers on the wild.

Using this module one can access hundreds of scientific datasets from Python programs, accessing data in an efficient, transparent and pythonic way. Arrays are manipulated like normal multi-dimensional arrays (like numpy.array, e.g.), with the fundamental difference that data is downloaded on-the-fly when a variable is sliced. Sequential data can be filtered on the server side before being downloaded, saving bandwidth and time.

The module also implements a DAP server, allowing datasets from a multitude of formats (netCDF, Matlab, CSV, GrADS/GRIB files, SQL RDBMS) to be served on the internet. The server specifies a plugin API for supporting new data formats in an easy way. The DAP server is implemented as a WSGI application (see PEP 333), running on a variety of servers, and can be combined with WSGI middleware to support authentication, gzip compression and much more.

Python-openturns
Python front-end of OpenTURNS (aka TUI)
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OpenTURNS is a powerful and generic tool to treat and quantify uncertainties in numerical simulations in design, optimization and control. It allows both sensitivity and reliability analysis studies:

  • defining the outputs of interest and decision criterion;
  • quantify and model the source of uncertainties;
  • propagate uncertainties and/or analyse sensitivity and
  • rank the sources of uncertainty

OpenTURNS is a large project with more than 300 C++ classes which uses well known and supported software such as R for the statistical methods and BLAS/LAPACK for the linear algebra.

This package provides a textual user interface that gives access to all the functionalities provided by the OpenTURNS library.

R-base
GNU R statistical computation and graphics system
Maintainer: Dirk Eddelbuettel
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R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files.

The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme.

The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations.

Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'.

This package is a metapackage which eases the transition from the pre-1.5.0 package setup with its larger r-base package. Once installed, it can be safely removed and apt-get will automatically upgrade its components during future upgrades. Providing this package gives a way to users to then only install r-base-core if they so desire.

The package is enhanced by the following packages: texmacs
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No known packages available but some record of interest (WNPP bug)

Geonetwork - wnpp
Catalog application to manage spatially referenced resources through the web
Responsible: Alastair McKinstry
License: GPL
Debian package not available

Network opensource is a standards based, Free and Open Source catalog application to manage spatially referenced resources through the web. It provides powerful metadata editing and search functions as well as an embedded interactive web map viewer. This website contains information related to the use of the software.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 200581