Summary
Data Management
Debian Science Data Management packages
This metapackage will install packages to assist with data management
tasks, such as obtaining data from remote resources, keeping data
under version control, etc.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Science
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Science mailing list
Links to other tasks
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Debian Science Data Management packages
Official Debian packages with high relevance
datalad
??? missing short description for package datalad :-(
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Versions of package datalad |
Release | Version | Architectures |
sid | 1.1.3-2 | all |
stretch | 0.4.1-1 | all |
buster | 0.11.2-2 | all |
bullseye | 0.14.0-1 | all |
bookworm | 0.18.1-2 | all |
trixie | 1.1.3-2 | all |
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License: DFSG free
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datalad-container
DataLad extension for working with containerized environments
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Versions of package datalad-container |
Release | Version | Architectures |
bookworm | 1.1.9-1 | all |
bullseye | 1.1.2-1 | all |
buster | 0.2.2-2 | all |
sid | 1.2.5-1 | all |
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License: DFSG free
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This extension enhances DataLad (http://datalad.org) for working with
computational containers.
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git-annex
manage files with git, without checking their contents into git
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Versions of package git-annex |
Release | Version | Architectures |
bookworm-backports | 10.20240129-1~bpo12+1 | armel |
bookworm | 10.20230126-3 | amd64,arm64,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 8.20210223-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster-backports | 8.20200330-1~bpo10+1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 7.20190129-3 | amd64,arm64,armhf,i386 |
stretch-backports | 7.20190129-2~bpo9+1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
stretch-backports | 7.20181211-2~bpo9+1 | mips |
stretch-backports | 6.20180913-1~bpo9+1 | mipsel |
stretch | 6.20170101-1+deb9u2 | amd64,arm64,i386,mips,mips64el,mipsel,ppc64el,s390x |
stretch-security | 6.20170101-1+deb9u1 | amd64,i386 |
jessie | 5.20141125+deb8u1 | amd64,armel,armhf,i386 |
jessie-security | 5.20141125+oops-1+deb8u2 | amd64,armel,armhf,i386 |
sid | 10.20240430-1 | amd64,arm64,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 10.20240430-1 | amd64,arm64,i386,mips64el,ppc64el,riscv64,s390x |
bookworm-backports | 10.20240430-1~bpo12+1 | amd64,arm64,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package git-annex: |
devel | rcs |
role | program |
works-with | file |
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License: DFSG free
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git-annex allows managing large files with git, without storing the file
contents in git. It can sync, backup, and archive your data, offline
and online. Checksums and encryption keep your data safe and secure. Bring
the power and distributed nature of git to bear on your large files with
git-annex.
It can store large files in many places, from local hard drives, to a
large number of cloud storage services, including S3, WebDAV,
and rsync, with dozens of cloud storage providers usable via plugins.
Files can be stored encrypted with gpg, so that the cloud storage
provider cannot see your data. git-annex keeps track of where each file
is stored, so it knows how many copies are available, and has many
facilities to ensure your data is preserved.
git-annex can also be used to keep a folder in sync between computers,
noticing when files are changed, and automatically committing them
to git and transferring them to other computers. The git-annex webapp
makes it easy to set up and use git-annex this way.
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hdf5-filter-plugin
external filters for HDF5: LZ4, BZip2, Bitshuffle
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Versions of package hdf5-filter-plugin |
Release | Version | Architectures |
sid | 0.0~git20221111.49e3b65-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 0.0~git20221111.49e3b65-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.0~git20221111.49e3b65-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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The external filter mechanism introduced with HDF5 1.8.12 allows
applications to utilize custom filters not shipped by the HDF5
core library without recompiling your application. This package
provides external filters for HDF5 for
- the LZ4 compression algorithm
- BZip2 compression
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hdf5-filter-plugin-blosc-serial
blocking, shuffling and lossless compression library
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Versions of package hdf5-filter-plugin-blosc-serial |
Release | Version | Architectures |
sid | 0.0~git20220616.9683f7d-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 0.0~git20220616.9683f7d-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.0~git20220616.9683f7d-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
upstream | 0.0~git20240808.b108ad1 |
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License: DFSG free
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This package contains a filter for HDF5 that uses the Blosc compressor.
By installing this filter, you can read and write HDF5 files with
Blosc-compressed datasets.
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hdf5-filter-plugin-zfp-serial
Compression plugin for the HDF5 library using ZFP compression
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Versions of package hdf5-filter-plugin-zfp-serial |
Release | Version | Architectures |
sid | 1.1.1-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64 |
trixie | 1.1.1-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64 |
bookworm | 1.1.0+git20221021-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el |
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License: DFSG free
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H5Z-ZFP is a compression filter for HDF5 using the ZFP compression library,
supporting lossy and lossless compression of floating point and integer data
to meet bitrate, accuracy, and/or precision targets.
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nexus-tools
NeXus scientific data file format - applications
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Versions of package nexus-tools |
Release | Version | Architectures |
bullseye | 4.4.3-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 4.4.3-6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 4.4.3-6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 4.4.3-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 4.3.2-svn1921-2 | amd64,armel,armhf,i386 |
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License: DFSG free
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NeXus is a common data format for neutron, X-ray, and muon science. It
is being developed as an international standard by scientists and
programmers representing major scientific facilities in Europe, Asia,
Australia, and North America in order to facilitate greater cooperation
in the analysis and visualization of neutron, X-ray, and muon data.
This is the package containing some applications for reading and writing
NeXus files.
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plfit
fitting power-law distributions to empirical data -- interfaces
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Versions of package plfit |
Release | Version | Architectures |
bookworm | 0.9.4+ds-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el |
trixie | 0.9.6+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.9.6+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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The plfit software fits power-law distributions to empirical (discrete or
continuous) data, according to the method of Clauset, Shalizi and Newman
[SIAM Review 51, 661-703 (2009)].
This package provides two command line utilities, plfit and plgen.
The package is enhanced by the following packages:
plfit-doc
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python3-jdata
JData encoder/decoder for python 3
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Versions of package python3-jdata |
Release | Version | Architectures |
bookworm | 0.3.6-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 0.3.6-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 0.3.6-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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The JData Specification (https://github.com/fangq/jdata/) defines a
lightweight language-independent data annotation interface targeted at
storing and sharing complex data structures across different programming
languages such as MATLAB, JavaScript, python etc. Using JData formats, a
complex python data structure can be encoded as a dict object that is
easily serialized as a JSON/binary JSON file and share such data between
programs of different languages.
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python3-mdp
Modular toolkit for Data Processing
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Versions of package python3-mdp |
Release | Version | Architectures |
jessie | 3.3-2 | all |
stretch | 3.5-1 | all |
bullseye | 3.6-1.1 | all |
bookworm | 3.6-2 | amd64,arm64,mips64el,ppc64el |
trixie | 3.6-8 | all |
sid | 3.6-8 | all |
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License: DFSG free
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Python data processing framework for building complex data processing software
by combining widely used machine learning algorithms into pipelines and
networks. Implemented algorithms include: Principal Component Analysis (PCA),
Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent
Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis,
Fisher Discriminant Analysis (FDA), and Gaussian Classifiers.
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python3-nxs
NeXus scientific data file format - Python 3 binding
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Versions of package python3-nxs |
Release | Version | Architectures |
sid | 4.4.1-5 | all |
bookworm | 4.4.1-4 | all |
bullseye | 4.4.1-3 | all |
trixie | 4.4.1-5 | all |
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License: DFSG free
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NeXus is a common data format for neutron, X-ray, and muon science. It
is being developed as an international standard by scientists and
programmers representing major scientific facilities in Europe, Asia,
Australia, and North America in order to facilitate greater cooperation
in the analysis and visualization of neutron, X-ray, and muon data.
This is the package containing the Python 3 bindings.
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python3-pyzoltan
Wrapper for the Zoltan data management library
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Versions of package python3-pyzoltan |
Release | Version | Architectures |
bookworm | 1.0.1-5+deb12u1 | amd64,arm64,ppc64el,s390x |
sid | 1.0.1-12 | amd64,arm64,mips64el,ppc64el,riscv64,s390x |
trixie | 1.0.1-12 | amd64,arm64,mips64el,ppc64el,riscv64,s390x |
bullseye | 1.0.1-2+deb11u1 | amd64,arm64,ppc64el,s390x |
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License: DFSG free
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PyZoltan is as the name suggests, is a Python wrapper for the
Zoltan data management library.
In PyZoltan, only specific routines and objects are wrapped.
The following features of Zoltan are currently supported:
- Dynamic load balancing using geometric algorithms
- Unstructured point-to-point communication
- Distributed data directories
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virtuoso-opensource
high-performance database
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Versions of package virtuoso-opensource |
Release | Version | Architectures |
stretch | 6.1.6+dfsg2-4 | all |
jessie | 6.1.6+dfsg2-2 | all |
buster | 6.1.6+dfsg2-4 | all |
sid | 7.2.12+dfsg-1 | all |
bullseye | 7.2.5.1+dfsg1-0.1 | all |
bookworm | 7.2.5.1+dfsg1-0.3 | all |
trixie | 7.2.12+dfsg-1 | all |
upstream | 7.2.13 |
Debtags of package virtuoso-opensource: |
role | metapackage, program |
works-with | db |
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License: DFSG free
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OpenLink Virtuoso is a high-performance object-relational SQL database.
It provides transactions, a smart SQL compiler, hot backup, SQL:1999
support, a powerful stored-procedure language supporting server-side
Java or .NET, and more. It supports all major data-access interfaces,
including ODBC, JDBC, ADO.NET, and OLE/DB.
Virtuoso supports SPARQL embedded into SQL for querying RDF data stored
in its database. SPARQL benefits from low-level support in the engine
itself, such as SPARQL-aware type-casting rules and a dedicated IRI data
type.
Install this metapackage for the full suite of packages that make up
Virtuoso OSE ("Open-Source Edition").
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visidata
rapidly explore columnar data in the terminal
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Versions of package visidata |
Release | Version | Architectures |
bookworm | 2.11-1 | all |
buster | 1.5.2-1 | all |
trixie | 3.0.2-1 | all |
sid | 3.0.2-1 | all |
bullseye | 2.2.1-1 | all |
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License: DFSG free
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VisiData is a multipurpose terminal utility for exploring, cleaning,
restructuring and analysing tabular data. Current supported sources are
TSV, CSV, fixed-width text, JSON, SQLite, HTTP, HTML, .xls, and .xlsx
(Microsoft Excel).
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Official Debian packages with lower relevance
libnexus-dev
NeXus scientific data file format - development libraries
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Versions of package libnexus-dev |
Release | Version | Architectures |
bookworm | 4.4.3-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 4.4.3-6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 4.4.3-6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 4.4.3-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
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NeXus is a common data format for neutron, X-ray, and muon science. It
is being developed as an international standard by scientists and
programmers representing major scientific facilities in Europe, Asia,
Australia, and North America in order to facilitate greater cooperation
in the analysis and visualization of neutron, X-ray, and muon data.
This is the package containing the development libraries.
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libnexus-java
NeXus scientific data file format - java libraries
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Versions of package libnexus-java |
Release | Version | Architectures |
sid | 4.4.3-6 | all |
bullseye | 4.4.3-5 | all |
bookworm | 4.4.3-5 | all |
trixie | 4.4.3-6 | all |
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License: DFSG free
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NeXus is a common data format for neutron, X-ray, and muon science. It
is being developed as an international standard by scientists and
programmers representing major scientific facilities in Europe, Asia,
Australia, and North America in order to facilitate greater cooperation
in the analysis and visualization of neutron, X-ray, and muon data.
This is the package containing the java libraries.
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libplfit-dev
fitting power-law distributions to empirical data -- development
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Versions of package libplfit-dev |
Release | Version | Architectures |
trixie | 0.9.6+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 0.9.4+ds-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el |
sid | 0.9.6+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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The plfit software fits power-law distributions to empirical (discrete or
continuous) data, according to the method of Clauset, Shalizi and Newman
[SIAM Review 51, 661-703 (2009)].
This package contains the header files, static libraries and symbolic
links that developers using the plfit library will need.
The package is enhanced by the following packages:
plfit-doc
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python3-openpyxl
Python 3 module to read/write OpenXML xlsx/xlsm files
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Versions of package python3-openpyxl |
Release | Version | Architectures |
sid | 3.1.5+dfsg-1 | all |
stretch | 2.3.0-3 | all |
buster | 2.4.9-1 | all |
bookworm | 3.0.9-1 | all |
trixie | 3.1.5+dfsg-1 | all |
bullseye | 3.0.3-1 | all |
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License: DFSG free
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Openpyxl is a pure Python 3 module to read/write Excel 2007 (OpenXML)
xlsx/xlsm files.
This package contains the module itself.
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python3-opentsne
t-Distributed Stochastic Neighbor Embedding algorithm
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Versions of package python3-opentsne |
Release | Version | Architectures |
trixie | 1.0.2-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 1.0.2-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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Modular Python implementation of t-Distributed Stochasitc Neighbor
Embedding (t-SNE), a popular dimensionality-reduction algorithm for
visualizing high-dimensional data sets. openTSNE incorporates the
latest improvements to the t-SNE algorithm, including the ability to
add new data points to existing embeddings, massive speed
improvements, enabling t-SNE to scale to millions of data points and
various tricks to improve global alignment of the
resulting visualizations.
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python3-plfit
fitting power-law distributions to empirical data -- Python
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Versions of package python3-plfit |
Release | Version | Architectures |
bookworm | 0.9.4+ds-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el |
sid | 0.9.6+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 0.9.6+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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The plfit software fits power-law distributions to empirical (discrete or
continuous) data, according to the method of Clauset, Shalizi and Newman
[SIAM Review 51, 661-703 (2009)].
This package provides a Python module.
The package is enhanced by the following packages:
plfit-doc
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