Summary
Biology
Debian Science Biology packages
This metapackage will install Debian Science packages related to
Biology. You might also be interested in the field::biology debtag.
This metapackage makes use of the packages med-bio and med-bio-dev
(for development of biological applications) which are maintained
by Debian Med - another Debian Pure Blend. If you are a biologist
you are most probably interested in the Debian Med project which
deals with biology and medicine in much more detail then the more
general Debian Science.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Science
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Science mailing list
Links to other tasks
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Debian Science Biology packages
Official Debian packages with high relevance
Bauble
biodiversity collection manager software application
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Versions of package bauble |
Release | Version | Architectures |
jessie | 0.9.7-2 | all |
stretch | 0.9.7-2.1 | all |
Debtags of package bauble: |
field | biology |
interface | x11 |
role | program |
uitoolkit | gtk |
use | organizing |
x11 | application |
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License: DFSG free
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Bauble is a software application to help you manage a collection of
botanical specimens. It is intended to be used by botanic gardens,
herbaria, arboreta, etc. to manage their collection information.
It is a open, free, cross-platform alternative to BG-Base and
similar software.
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Critterding
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Versions of package critterding |
Release | Version | Architectures |
jessie | 1.0-beta12.1-1.2 | amd64,armel,armhf,i386 |
stretch | 1.0-beta12.1-1.3 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 1.0-beta12.1-1.3 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
bullseye | 1.0-beta12.1-1.3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 1.0-beta12.1-1.3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 1.0-beta12.1-1.3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
experimental | 1.0-beta14+dfsg-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
upstream | 1.0-beta14 |
Debtags of package critterding: |
interface | 3d, x11 |
role | program |
uitoolkit | sdl |
use | simulating |
x11 | application |
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License: DFSG free
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Critterding is a "Petri dish" universe in 3D that demonstrates
evolving artificial life. Critters start out with completely
random brains and bodies, but will automatically start evolving
into something with much better survival skills.
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Med-bio
Debian Med bioinformatics packages
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Versions of package med-bio |
Release | Version | Architectures |
sid | 3.7.3 | all |
jessie | 2.0 | all |
stretch | 3.0.1 | all |
buster | 3.3 | all |
bullseye | 3.7 | all |
bookworm | 3.7.3 | all |
Debtags of package med-bio: |
field | biology |
role | metapackage |
suite | debian |
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License: DFSG free
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This metapackage will install Debian packages for use in molecular biology,
structural biology and other biological sciences.
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Official Debian packages with lower relevance
Med-bio-dev
Debian Med packages for development of bioinformatics applications
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Versions of package med-bio-dev |
Release | Version | Architectures |
sid | 3.7.3 | all |
bullseye | 3.7 | all |
stretch | 3.0.1 | all |
jessie | 2.0 | all |
bookworm | 3.7.3 | all |
buster | 3.3 | all |
Debtags of package med-bio-dev: |
field | biology |
role | metapackage |
suite | debian |
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License: DFSG free
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This metapackage will install Debian packages which might be helpful
for development of applications for biological research.
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Packaging has started and developers might try the packaging code in VCS
Genesis
general-purpose neural simulator
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Versions of package genesis |
Release | Version | Architectures |
VCS | 2.3+dfsg-1 | all |
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License: free
Debian package not available
Version: 2.3+dfsg-1
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GENESIS is a general purpose simulation platform which was developed to
support the simulation of neural systems ranging from complex models of
single neurons to simulations of large networks made up of more abstract
neuronal components.
GENESIS has provided the basis for laboratory courses in neural simulation
at both Caltech and the Marine Biological Laboratory in Woods Hole, MA.
Most current GENESIS applications involve realistic simulations of
biological neural systems. Although the software can also model more
abstract networks, other simulators are more suitable for backpropagation
and similar connectionist modeling.
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