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Next generation sequencing - Quality Assurance

Summary

Autoremovals: 1

Migration issues: 4

CI failures: 5

Install issues: 3

No issues: 12/23

Debian Med bioinformatics applications usable in Next Generation Sequencing

It aims at gettting packages which specialize in the processing or interpretation of data generated with next- (and later-) generation high-thoughput sequencing technologies.

blasr

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-04
  • Dependencies leading to autoremoval: pbcopper
  • Bugs in dependencies leading to autoremoval: #1097555

python-anndata

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: python-awkward

Piuparts failed:

picard-tools

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

bowtie

😟 CI

Continuous integration (CI) tests are failing:

daligner

😟 CI

Continuous integration (CI) tests are failing:

sra-sdk

😟 CI

Continuous integration (CI) tests are failing:

bcftools

😟 Migration

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: htslib

htslib

😟 Migration

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

samtools

😟 Migration

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: htslib

libvcflib

😟 Install/upgrade

Piuparts failed:

mhap

😑 Tests missing

Continuous integration (CI) tests are missing.