Cloud - QA · Debian Med

biomaj3-cli

😟 Autoremoval

😟 CI

Package marked for automatic removal:

Will be removed on: 2025-09-24
Dependencies leading to autoremoval: biomaj3-download python-elasticsearch
Bugs in dependencies leading to autoremoval: #1110796 #1110798 #1110800

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest-pkg-python

freecontact

😟 Autoremoval

😟 CI

Package marked for automatic removal:

Will be removed on: 2025-10-04
Bugs leading to autoremoval: #1096651
Will result in removal of libfreecontact-perl python-freecontact with total popcon score of 0

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

gasic

😟 Autoremoval

😟 CI

Package marked for automatic removal:

Will be removed on: 2025-10-05
Dependencies leading to autoremoval: csh emboss mafft
Bugs in dependencies leading to autoremoval: #1096486 #1096578 #1097352

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

python-biopython

😟 Autoremoval

😟 CI

Package marked for automatic removal:

Will be removed on: 2025-10-05
Dependencies leading to autoremoval: csh emboss mafft
Bugs in dependencies leading to autoremoval: #1096486 #1096578 #1097352

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

bioperl

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2025-10-06
Dependencies leading to autoremoval: libace-perl libconvert-binary-c-perl libdbd-pg-perl
Bugs in dependencies leading to autoremoval: #1097160 #1097174 #1097179

Piuparts failed:

Version: 1.7.8-2
Sections: sid-broken-symlinks

mafft

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2025-10-05
Bugs leading to autoremoval: #1097352
Will result in removal of ampliconnoise arb ariba augur bioperl-run busco cctbx changeo cnvkit cutesv deblur dials elpa-snakemake gasic graphlan gubbins hinge idseq-bench insilicoseq kallisto kaptive kineticstools kleborate lamassemble libbio-tools-phylo-paml-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-tcoffee-perl libobjcryst mcaller mdanalysis metaphlan mirtop nanofilt nanolyse ncbi-acc-download objcryst-fox optimir paleomix parsnp peptidebuilder pigx-rnaseq pizzly presto psortb pyensembl pyfastx pyobjcryst python-bcbio-gff python-biopython python-cai python-cgecore python-cooler python-datacache python-dynasor python-emmet-core python-gffutils python-mp-api python-nanoget python-pauvre python-pbcommand python-pbcore python-prodigy python-pyani python-pyfaidx python-seqcluster python-treetime qcat qcumber recan resfinder roary seqmagick seqsero smrtanalysis snakemake srst2 trinityrnaseq virulencefinder xpore xraylarch yanagiba with total popcon score of 0

Piuparts failed:

Version: 7.525-1
Sections: sid-broken-symlinks

ncbi-tools6

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2025-10-05
Dependencies leading to autoremoval: csh
Bugs in dependencies leading to autoremoval: #1096486

Piuparts failed:

Version: 6.1.20170106+dfsg2-6
Sections: oldstable22testing oldstable222sid

embassy-domainatrix

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

Will be removed on: 2025-10-05
Dependencies leading to autoremoval: emboss
Bugs in dependencies leading to autoremoval: #1096578

Continuous integration (CI) tests are missing.

embassy-domalign

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

Will be removed on: 2025-10-05
Dependencies leading to autoremoval: emboss
Bugs in dependencies leading to autoremoval: #1096578

Continuous integration (CI) tests are missing.

embassy-domsearch

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

Will be removed on: 2025-10-05
Dependencies leading to autoremoval: emboss
Bugs in dependencies leading to autoremoval: #1096578

Continuous integration (CI) tests are missing.

abyss

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-04
Dependencies leading to autoremoval: libsdsl
Bugs in dependencies leading to autoremoval: #1097267

altree

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-09-19
Bugs leading to autoremoval: #1096300

ampliconnoise

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-09-19
Bugs leading to autoremoval: #1096305
Dependencies leading to autoremoval: mafft
Bugs in dependencies leading to autoremoval: #1097352

bioperl-run

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-04
Dependencies leading to autoremoval: coils csh emboss libace-perl libconvert-binary-c-perl libdbd-pg-perl libyaml-syck-perl mafft primer3 sim4
Bugs in dependencies leading to autoremoval: #1096450 #1096486 #1096578 #1097160 #1097174 #1097179 #1097292 #1097352 #1097649 #1097885

coils

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-04
Bugs leading to autoremoval: #1096450
Will result in removal of bioperl-run libbio-tools-phylo-paml-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-tcoffee-perl psortb with total popcon score of 0

emboss

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-05
Bugs leading to autoremoval: #1096578
Will result in removal of ariba artemis augur bioperl-run busco cctbx changeo chemicaltagger cnvkit cutesv dials elpa-snakemake embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer gasic graphlan gubbins hinge idseq-bench insilicoseq kallisto kaptive kineticstools kleborate libbio-tools-phylo-paml-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-tcoffee-perl libobjcryst mcaller mdanalysis metaphlan mirtop nanofilt nanolyse ncbi-acc-download objcryst-fox optimir oscar4 parsnp peptidebuilder pigx-rnaseq pizzly presto psortb pyensembl pyfastx pyobjcryst python-bcbio-gff python-biopython python-cai python-cgecore python-cooler python-datacache python-dynasor python-emmet-core python-gffutils python-mp-api python-nanoget python-pauvre python-pbcommand python-pbcore python-prodigy python-pyani python-pyfaidx python-seqcluster python-treetime qcat qcumber recan resfinder seqmagick seqsero smrtanalysis snakemake srst2 trinityrnaseq virulencefinder xpore xraylarch yanagiba with total popcon score of 0

fastlink

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-09-19
Bugs leading to autoremoval: #1096612

grinder

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-06
Dependencies leading to autoremoval: libace-perl libconvert-binary-c-perl libdbd-pg-perl
Bugs in dependencies leading to autoremoval: #1097160 #1097174 #1097179

mrbayes

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-05
Dependencies leading to autoremoval: pocl
Bugs in dependencies leading to autoremoval: #1097627

prime-phylo

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-09-19
Bugs leading to autoremoval: #1097647

primer3

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-04
Bugs leading to autoremoval: #1097649
Will result in removal of bioperl-run libbio-primerdesigner-perl libbio-tools-phylo-paml-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-tcoffee-perl psortb with total popcon score of 0

raster3d

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-09-19
Bugs leading to autoremoval: #1097773

readseq

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-04
Bugs leading to autoremoval: #1097779
Dependencies leading to autoremoval: csh
Bugs in dependencies leading to autoremoval: #1096486
Will result in removal of arb with total popcon score of 0

sim4

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-04
Bugs leading to autoremoval: #1097885
Will result in removal of bioperl-run libbio-tools-phylo-paml-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-tcoffee-perl psortb with total popcon score of 0

smalt

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-10-04
Dependencies leading to autoremoval: bambamc
Bugs in dependencies leading to autoremoval: #1096356

soapdenovo

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-09-19
Bugs leading to autoremoval: #1097907

soapdenovo2

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2025-09-19
Bugs leading to autoremoval: #1097909

gromacs

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: openmpi
Migrates after: hwloc

Piuparts failed:

Version: 2025.3-1
Sections: oldstable222sid

python-cogent

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest, autopkgtest-pkg-python

Migration from unstable to testing is blocked:

Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest, depends

Piuparts failed:

Version: 2024.5.7a1+dfsg-3
Sections: sid-nodoc sid-broken-symlinks sid sid-strict

qiime

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest

picard-tools

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 3.3.0+dfsg-2
Sections: oldstable22testing

bowtie

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

bowtie2

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

fastqc

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

hmmer

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

infernal

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

jellyfish

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

mummer

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

muscle

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

parsinsert

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

perm

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

probabel

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

proda

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

seqan2

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

sigma-align

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

sra-sdk

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

theseus

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

acedb

😟 Migration

😑 Tests missing

Migration from unstable to testing is blocked:

Verdict: Rejected/violates migration policy/introduces a regression

Continuous integration (CI) tests are missing.

htslib

😟 Migration

Migration from unstable to testing is blocked:

Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest

samtools

😟 Migration

Migration from unstable to testing is blocked:

Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: build-depends, depends
Invalidated by another package
Blocked by: htslib

pdb2pqr

😟 Install/upgrade

Piuparts failed: