Summary

Autoremovals: 6

Migration issues: 2

CI failures: 4

Install issues: 32

No issues: 5/42

Debian Med phylogeny packages

This lists Debian packages related to phylogeny for use in life sciences. The purpose of this compilation of packages is to have a handy subset of from the med-bio metapackage which contains a lot more than only phylogeny related software.

beast-mcmc

😟 Autoremoval

😟 Install/upgrade

😑 Tests missing

Package marked for automatic removal:

Will be removed on: 2024-08-25
Dependencies leading to autoremoval: pocl
Bugs in dependencies leading to autoremoval: #1075393

Piuparts failed:

Version: 1.8.4+dfsg.1-1~bpo8+1
Sections: jessie2bpo

Continuous integration (CI) tests are missing.

iqtree

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2024-08-23
Dependencies leading to autoremoval: sprng
Bugs in dependencies leading to autoremoval: #1075536

Piuparts failed:

Version: 1.5.3+dfsg-2~bpo8+1
Sections: jessie2bpo

mrbayes

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2024-08-25
Dependencies leading to autoremoval: pocl
Bugs in dependencies leading to autoremoval: #1075393

Piuparts failed:

Version: 3.2.7a-7
Sections: oldstable222sid

njplot

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2024-08-23
Dependencies leading to autoremoval: csh ncbi-tools6
Bugs in dependencies leading to autoremoval: #1074892 #1075307

Piuparts failed:

Version: 2.4-7
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd

tree-puzzle

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2024-08-08
Bugs leading to autoremoval: #1075584
Dependencies leading to autoremoval: sprng
Bugs in dependencies leading to autoremoval: #1075536

Piuparts failed:

Version: 5.3~rc16+dfsg-9
Sections: oldstable222sid oldstable22testing

python-treetime

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2024-08-23
Dependencies leading to autoremoval: csh libgdchart-gd2 ncbi-tools6 wise
Bugs in dependencies leading to autoremoval: #1074892 #1075170 #1075307 #1075638

pplacer

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Not in testing for 562 days.
Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest
Migrates after: gsl

hmmer

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 3.4+dfsg-2
Sections: oldstable222sid sid-broken-symlinks

muscle

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1:3.8.31+dfsg-2
Sections: jessie-lts2stretch jessie2Xstretch jessie2stretch

proda

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1.0-8
Sections: wheezy2jessie-rcmd

altree

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: gsl

Piuparts failed: