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Phylogeny - Quality Assurance

Summary

Autoremovals: 2

Migration issues: 11

CI failures: 4

Install issues: 31

No issues: 5/41

Debian Med phylogeny packages

This lists Debian packages related to phylogeny for use in life sciences. The purpose of this compilation of packages is to have a handy subset of from the med-bio metapackage which contains a lot more than only phylogeny related software.

populations

😟 Autoremoval

😟 Migration

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-05-03
  • Bugs leading to autoremoval: #1068424

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 20 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: qtbase-opensource-src

Piuparts failed:

python-treetime

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-05-06
  • Dependencies leading to autoremoval: wise
  • Bugs in dependencies leading to autoremoval: #1066705

phyml

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

  • Version: 3:3.2.0+dfsg-7~bpo8+1
  • Sections: jessie2bpo

hmmer

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

muscle

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

proda

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

pplacer

😟 Migration

😑 Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 470 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Continuous integration (CI) tests are missing.

altree

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: perl

Piuparts failed:

clustalx

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: qtbase-opensource-src

Piuparts failed:

exonerate

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: glib2.0

Piuparts failed:

iqtree

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

  • Version: 1.5.3+dfsg-2~bpo8+1
  • Sections: jessie2bpo

seaview

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: fltk1.3

Piuparts failed:

tree-puzzle

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

treeviewx

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: wxwidgets3.2

Piuparts failed:

sigma-align

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Not in testing for 17 days.
  • Verdict: Waiting for test results, another package or too young (no action required now - check later)
  • Reason: autopkgtest
  • Migrates after: glib2.0

Piuparts failed:

beast-mcmc

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

  • Version: 1.8.4+dfsg.1-1~bpo8+1
  • Sections: jessie2bpo

Continuous integration (CI) tests are missing.

proalign

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

clustalw

😟 Install/upgrade

Piuparts failed:

dialign

😟 Install/upgrade

Piuparts failed:

dialign-t

😟 Install/upgrade

Piuparts failed:

fastdnaml

😟 Install/upgrade

Piuparts failed:

fasttree

😟 Install/upgrade

Piuparts failed:

figtree

😟 Install/upgrade

Piuparts failed:

  • Version: 1.4.2+dfsg-2~bpo8+1
  • Sections: jessie2bpo

kalign

😟 Install/upgrade

Piuparts failed:

mrbayes

😟 Install/upgrade

Piuparts failed:

mustang

😟 Install/upgrade

Piuparts failed:

njplot

😟 Install/upgrade

Piuparts failed:

phylip

😟 Install/upgrade

Piuparts failed:

poa

😟 Install/upgrade

Piuparts failed:

probalign

😟 Install/upgrade

Piuparts failed:

probcons

😟 Install/upgrade

Piuparts failed:

t-coffee

😟 Install/upgrade

Piuparts failed:

tm-align

😟 Install/upgrade

Piuparts failed:

jmodeltest

😑 Tests missing

Continuous integration (CI) tests are missing.

spread-phy

😑 Tests missing

Continuous integration (CI) tests are missing.

treeview

😑 Tests missing

Continuous integration (CI) tests are missing.