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Phylogeny - Quality Assurance

Summary

Autoremovals: 6

Migration issues: 2

CI failures: 4

Install issues: 1

No issues: 25/41

Debian Med phylogeny packages

This lists Debian packages related to phylogeny for use in life sciences. The purpose of this compilation of packages is to have a handy subset of from the med-bio metapackage which contains a lot more than only phylogeny related software.

beast-mcmc

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

  • Will be removed on: 2025-10-04
  • Dependencies leading to autoremoval: f2j pocl
  • Bugs in dependencies leading to autoremoval: #1096604 #1097627

Continuous integration (CI) tests are missing.

altree

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-09-19
  • Bugs leading to autoremoval: #1096300

iqtree

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-04
  • Bugs leading to autoremoval: #1096850
  • Will result in removal of gubbins with total popcon score of 0

mrbayes

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-05
  • Dependencies leading to autoremoval: pocl
  • Bugs in dependencies leading to autoremoval: #1097627

njplot

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-05
  • Dependencies leading to autoremoval: csh
  • Bugs in dependencies leading to autoremoval: #1096486

python-treetime

😟 Autoremoval

Package marked for automatic removal:

hmmer

😟 CI

Continuous integration (CI) tests are failing:

muscle

😟 CI

Continuous integration (CI) tests are failing:

proda

😟 CI

Continuous integration (CI) tests are failing:

sigma-align

😟 CI

Continuous integration (CI) tests are failing:

jmodeltest

😟 Migration

😑 Tests missing

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression

Continuous integration (CI) tests are missing.

pplacer

😟 Migration

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression

treeviewx

😟 Install/upgrade

Piuparts failed:

proalign

😑 Tests missing

Continuous integration (CI) tests are missing.

spread-phy

😑 Tests missing

Continuous integration (CI) tests are missing.

treeview

😑 Tests missing

Continuous integration (CI) tests are missing.