Debian Science High Energy Physics (devel) packages

CERNLIB to zestaw narzędzi do analizy danych oraz bibliotek stworzonych na potrzeby fizyki doświadczalnej, zawiera jednak również aplikacje pomocne w innych dziedzinach, takich jak nauki biologiczne.

Pakiet zawiera skrypt cernlib wyświetlający opcje wiersza poleceń potrzebne do konsolidacji z bibliotekami CERNLIB. Skrypt został przepisany z poprzedniej wersji aby obliczać zależności rekursywnie. Dołączony jest także zestaw makr Autoconf do testowania bibliotek CERNLIB, oraz zestaw makr Imake pozwalający zbudować moduły CERNLIB poza drzewem katalogów.

CERNLIB to zestaw narzędzi i bibliotek do analizy danych stworzony na potrzeby fizyki doświadczalnej. Można go stosować również w innych dziedzinach naukowych, np. w naukach biologicznych.

Ten metapakiet dostarcza pliki nagłówkowe i biblioteki statyczne potrzebne deweloperom używającym biblioteki CERN i niezbyt zainteresowanym fizyką wielkich energii. Dostarcza on również narzędzia deweloperskie CERNLIB: DZedit, KUIPC oraz rodzinę programów Nypatchy. Programy do analiz CERNLIB można otrzymać po zainstalowaniu metapakietu cernlib-core.

LoopTools is a package for evaluation of scalar and tensor one-loop integrals based on the FF package by G.J. van Oldenborgh. It features an easy Fortran, C++, and Mathematica interface to the scalar one-loop functions of FF and in addition provides the 2-, 3-, and 4-point tensor coefficient functions.

This package provides a script, fcc, to compile C and C++ programs and link them with Fortran libraries.

CLHEP provides a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra.

This package provides development files of CLHEP.

The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides development files of FastJet.

The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides development files for Fortran bindings of FastJet.

The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides development files for plugins of FastJet. Note that ATLASCone and CDFCones plugins are removed due to license issue.

The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides development files of FastJet Tools.

The HepMC package is an object oriented event record written in C++ for High Energy Physics Monte Carlo Generators.

Many extensions from HEPEVT, the Fortran HEP standard, are supported: the number of entries is unlimited, spin density matrices can be stored with each vertex, flow patterns (such as color) can be stored and traced, integers representing random number generator states can be stored, and an arbitrary number of event weights can be included. Particles and vertices are kept separate in a graph structure, physically similar to a physics event.

The added information supports the modularisation of event generators. Event information is accessed by means of iterators supplied with the package.

This package provides development files for HepMC3.

The KIM API is an Application Programming Interface for atomistic simulations. The API provides a standard for exchanging information between atomistic simulation codes (molecular dynamics, molecular statics, lattice dynamics, Monte Carlo, etc.) and interatomic models (potentials or force fields). It also includes a set of library routines for using the API with bindings for:

FORTRAN 77, Fortran 90/95, Fortran 2003 C, C++

Atomistic simulation codes that support the KIM API work seamlessly with the KIM-compliant interatomic models (KIM Models) distributed on this website. The interface is computationally efficient and often requires relatively minor changes to existing codes.

This package contains the development files (headers and documentation) for KIM-API.

Common tool chain for working with molecular structure data in various applications. This library provides a unified way to perform operations on molecular structure data, like reading and writing to common geometry file formats.

This package contains development files.

MMDB is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files.

The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so there is no difference in handling different formats.

MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more.

This package contains library and header files needed for program development.

This is a source distribution of NCrystal, a library and associated tools which enables calculations for Monte Carlo simulations of thermal neutrons in crystals.

This package contains the development files.

LoopTools is a package for evaluation of scalar and tensor one-loop integrals based on the FF package by G.J. van Oldenborgh. It features an easy Fortran, C++, and Mathematica interface to the scalar one-loop functions of FF and in addition provides the 2-, 3-, and 4-point tensor coefficient functions.

This package provides development files of LoopTools.

SISCone implements a seedless infrared (IR) safe cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

This package provides development files of SISCone.

SISCone implements a seedless infrared (IR) safe cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

The spherical version of SISCone is designed for use in e+e- collisions.

This package provides development files of spherical version of SISCone.

NEURON is a simulation environment for modeling individual neurons and networks of neurons. It provides tools for conveniently building, managing, and using models in a way that is numerically sound and computationally efficient. It is particularly well-suited to problems that are closely linked to experimental data, especially those that involve cells with complex anatomical and biophysical properties.

This package contains development files for the NEURON environment.

The DIALS software is developed in a fully open-source, collaborative environment. The main development teams are based at Diamond Light Source and CCP4, in the UK, and at Lawrence Berkeley National Laboratory, USA. However, in the spirit of the open source movement, we welcome collaboration from anyone who wishes to contribute to the project.

To avoid “reinventing the wheel” as much as possible, the DIALS project builds on knowledge accumulated over many decades in the field of crystallographic data processing. We benefit greatly from the altruism of experts who contribute their ideas and advice, either directly or via their detailed publications on existing algorithms and packages such as XDS [2] and MOSFLM [3]. At the heart of the DIALS framework lies a design philosophy of hardware abstraction and a generalised model of the experiment that is inspired directly by material published on the seminal workshops on position sensitive detector software [1]. Continuing in the spirit of these workshops we held our own series of meetings, with talks from invited speakers, and code camps in which specific problems are addressed by intensive effort across the collaboration. Summaries of these meetings and copies of slides given as presentations are available here.

DIALS is written using Python and C++, making heavy use of the cctbx [4] for core crystallographic calculations and much infrastructure including a complete build system. Seamless interaction between the C++ and Python components of this hybrid system is enabled by Boost.Python. Python provides a useful ground for rapid prototyping, after which core algorithms and data structures may be transferred over to C++ for speed. High level interfaces of the hybrid system remain in Python, facilitating further development and code reuse both within DIALS and by third parties.

This is the Python 3 version of the package.

GPU-accelerated Python framework for exploring algorithms for alchemical free energy calculations.

NEURON is a simulation environment for modeling individual neurons and networks of neurons. It provides tools for conveniently building, managing, and using models in a way that is numerically sound and computationally efficient. It is particularly well-suited to problems that are closely linked to experimental data, especially those that involve cells with complex anatomical and biophysical properties.

This package contains Python bindings for NEURON.

Pymbar is a library that provides tools for optimally combining simulations from multiple thermodynamic states using maximum likelihood methods to compute free energies (normalization constants) and expectation values from all of the samples simultaneously.

ckon is a C++ program/tool which automatically takes care of compilation, dictionary generation and linking of programs and libraries developed for data analyses within the CERN ROOT analysis framework. This includes parsing include headers to figure out which libraries the main programs need to be linked to. It uses automake/autoconf to be platform independent and GNU install compliant. In addition, m4 macros are automatically downloaded and the according compiler flags included based on a list of boost libraries provided in the config file. For the purpose of YAML database usage, a m4 macro can be downloaded during setup to link against the yaml-cpp library.

CLHEP provides a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra.

This package provides HTML documentation of CLHEP.

The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides documentation of FastJet.

The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides example source files of FastJet.

Dictionary of ligands and constituent blocks (e.g. amino acids, nucleic acids, sugars) contains necessary stereochemical information (e.g. bond lengths, angles, torsion angles) about small molecules used in refinement and model building. Values in the dictionary are for an abstract form of monomers, i.e there is no conformational/configurational or environment dependence.

SISCone implements a Seedless Infrared (IR) Safe Cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

This package provides HTML Reference manual of SISCone.

SISCone implements a Seedless Infrared (IR) Safe Cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

This package provides PDF Reference manual of SISCone.

SISCone implements a seedless infrared (IR) safe cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

This package provides example source files of SISCone.