Debian Science Project
Summary
High Energy Physics (devel)
Debian Science High Energy Physics development packages

This metapackage will install Debian Science packages related to development of High Energy Physics applications, which is a branch of physics that studies the elementary subatomic constituents of matter and radiation, and their interactions. The field is also called Particle Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

Links to other tasks

Debian Science High Energy Physics (devel) packages

Official Debian packages with high relevance

cernlib-base-dev
CERNLIB data analysis suite - dependencies checking script
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CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

This package includes the "cernlib" script that lists the command-line options needed for linking against CERNLIB libraries. The script has been rewritten from the upstream version to calculate dependencies recursively. Also included are a contributed set of Autoconf macros to test for CERNLIB libraries, and a set of Imake macros to allow CERNLIB modules to be built out-of-tree.

cernlib-core-dev
CERNLIB data analysis suite - core development files
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CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

This metapackage provides the header files and static libraries needed by developers using the CERN libraries and not specifically interested in high energy physics. It also provides the CERNLIB development tools: DZedit, KUIPC, and the Nypatchy family of programs. CERNLIB analysis programs may be obtained by installing the cernlib-core metapackage.

fcc
Script to compile C/C++ programs and link to Fortran libraries
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LoopTools is a package for evaluation of scalar and tensor one-loop integrals based on the FF package by G.J. van Oldenborgh. It features an easy Fortran, C++, and Mathematica interface to the scalar one-loop functions of FF and in addition provides the 2-, 3-, and 4-point tensor coefficient functions.

This package provides a script, fcc, to compile C and C++ programs and link them with Fortran libraries.

herwig++-dev
Herwig++ development files
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Herwig++ is a completely new event generator, written in C++. It is built on the experience gained with the well-known event generator HERWIG. The aim is to provide a multi purpose event generator with similar or improved capabilities (like angular ordered parton evolution and the cluster hadronization model).

Thie package provides Herwig++ development files.

libclhep-dev
CLHEP: A Class Library for High Energy Physics - development
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CLHEP provides a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra.

This package provides development files of CLHEP.

libfastjet-dev
Development files of FastJet
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The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides development files of FastJet.

libfastjet-fortran-dev
Fortran bindings of FastJet - development files
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The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides development files for Fortran bindings of FastJet.

libfastjetplugins-dev
FastJet plugins - development files
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The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides development files for plugins of FastJet. Note that ATLASCone and CDFCones plugins are removed due to license issue.

libfastjettools-dev
Tools for FastJet - development files
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The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides development files of FastJet Tools.

libhepmc-dev
Event Record for Monte Carlo Generators - development files
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The HepMC package is an object oriented event record written in C++ for High Energy Physics Monte Carlo Generators.

Many extensions from HEPEVT, the Fortran HEP standard, are supported: the number of entries is unlimited, spin density matrices can be stored with each vertex, flow patterns (such as color) can be stored and traced, integers representing random number generator states can be stored, and an arbitrary number of event weights can be included. Particles and vertices are kept separate in a graph structure, physically similar to a physics event.

The added information supports the modularisation of event generators. Event information is accessed by means of iterators supplied with the package.

This package provides development files of HepMC.

libhepmc3-dev
Event Record for Monte Carlo Generators - development files
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The HepMC package is an object oriented event record written in C++ for High Energy Physics Monte Carlo Generators.

Many extensions from HEPEVT, the Fortran HEP standard, are supported: the number of entries is unlimited, spin density matrices can be stored with each vertex, flow patterns (such as color) can be stored and traced, integers representing random number generator states can be stored, and an arbitrary number of event weights can be included. Particles and vertices are kept separate in a graph structure, physically similar to a physics event.

The added information supports the modularisation of event generators. Event information is accessed by means of iterators supplied with the package.

This package provides development files for HepMC3.

libhepmcfio-dev
fio library of HepMC - development files
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The HepMC package is an object oriented event record written in C++ for High Energy Physics Monte Carlo Generators.

Many extensions from HEPEVT, the Fortran HEP standard, are supported: the number of entries is unlimited, spin density matrices can be stored with each vertex, flow patterns (such as color) can be stored and traced, integers representing random number generator states can be stored, and an arbitrary number of event weights can be included. Particles and vertices are kept separate in a graph structure, physically similar to a physics event.

The added information supports the modularisation of event generators. Event information is accessed by means of iterators supplied with the package.

This package provides development files of fio library of HepMC.

libhepmcinterface8-dev
HepMC interface for PYTHIA8 - development files (obsolete)
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PYTHIA is a program for the generation of high-energy physics events, i.e. for the description of collisions at high energies between elementary particles such as e+, e-, p and pbar in various combinations. It contains theory and models for a number of physics aspects, including hard and soft interactions, parton distributions, initial- and final-state parton showers, multiple interactions, fragmentation and decay.

This is a transitional dummy package, HepMC interface has been moved into the package 'libpythia8-dev'.

libkim-api-dev
Development files for KIM-API
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The KIM API is an Application Programming Interface for atomistic simulations. The API provides a standard for exchanging information between atomistic simulation codes (molecular dynamics, molecular statics, lattice dynamics, Monte Carlo, etc.) and interatomic models (potentials or force fields). It also includes a set of library routines for using the API with bindings for:

FORTRAN 77, Fortran 90/95, Fortran 2003 C, C++

Atomistic simulation codes that support the KIM API work seamlessly with the KIM-compliant interatomic models (KIM Models) distributed on this website. The interface is computationally efficient and often requires relatively minor changes to existing codes.

This package contains the development files (headers and documentation) for KIM-API.

liblhapdf-dev
[Physics] Les Houches Accord PDF Interface - development files
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LHAPDF provides a unified and easy to use interface to modern PDF sets. It is designed to work not only with individual PDF sets but also with the more recent multiple "error" sets. It can be viewed as the successor to PDFLIB, incorporating many of the older sets found in the latter, including pion and photon PDFs. In LHAPDF the computer code and input parameters/grids are separated thus allowing more easy updating and no limit to the expansion possibilities.

This package provides development files of LHAPDF, including C++ bindings.

libmctc-lib-dev
modular computation tool chain library (development files)
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Common tool chain for working with molecular structure data in various applications. This library provides a unified way to perform operations on molecular structure data, like reading and writing to common geometry file formats.

This package contains development files.

libmmdb2-dev
macromolecular coordinate library - development files
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MMDB is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files.

The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so there is no difference in handling different formats.

MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more.

This package contains library and header files needed for program development.

libncrystal-dev
Monte Carlo simulations of neutrons in crystals (dev files)
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This is a source distribution of NCrystal, a library and associated tools which enables calculations for Monte Carlo simulations of thermal neutrons in crystals.

This package contains the development files.

libooptools-dev
Development files of LoopTools
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LoopTools is a package for evaluation of scalar and tensor one-loop integrals based on the FF package by G.J. van Oldenborgh. It features an easy Fortran, C++, and Mathematica interface to the scalar one-loop functions of FF and in addition provides the 2-, 3-, and 4-point tensor coefficient functions.

This package provides development files of LoopTools.

libpythia8-dev
PYTHIA event generator of high energy physics - development files
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PYTHIA is a program for the generation of high-energy physics events, i.e. for the description of collisions at high energies between elementary particles such as e+, e-, p and pbar in various combinations. It contains theory and models for a number of physics aspects, including hard and soft interactions, parton distributions, initial- and final-state parton showers, multiple interactions, fragmentation and decay.

This package provides development files of PYTHIA8.

librivet-dev
Development files of Rivet
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Rivet is a toolkit for validation of Monte Carlo event generators. Using a computationally efficient model for observable computations, Rivet provides a set of experimental analyses useful for generator sanity checks, as well as a convenient infrastructure for adding your own analysis.

This package provides development files of Rivet.

libroot-bindings-python-dev
Python extension for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains the development files of Python plug-in for ROOT.

libroot-bindings-ruby-dev
Ruby extension for ROOT - development headers
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains the Ruby extension for ROOT.

libroot-core-dev
Header files for ROOT
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains header files (Class declarations) for the ROOT class libraries. Please refer the package documentation for libroot and root-bin.

libroot-geom-dev
Geometry library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of a library for defining geometries in ROOT.

libroot-graf2d-gpad-dev
Canvas and pad library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of a library for canvas and pad manipulations.

libroot-graf2d-graf-dev
Graf library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Graf library for ROOT.

libroot-graf2d-postscript-dev
Postscript/PDF renderer library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains developemnt files of a library for ROOT, which allows rendering postscript and PDF output.

libroot-graf3d-eve-dev
Event display library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of a library for defining event displays in ROOT.

libroot-graf3d-g3d-dev
Basic 3D shapes for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This library contains development files of the basic 3D shapes and classes for ROOT. For a more full-blown geometry library, see libroot-geom-dev.

libroot-graf3d-gl-dev
GL plugin for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains the GL plug-in for ROOT. This plugin provides 3D rendering of volumes and shapes defined in ROOT. Included is also a high quality 3D viewer for ROOT defined geometries.

libroot-gui-dev
GUI library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of a library for defining graphical user interfaces.

libroot-gui-ged-dev
GUI element for editing various ROOT objects - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of a library to show a pop-up window for editing various ROOT objects.

libroot-hist-dev
Histogram library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of a library for histogramming.

libroot-hist-spectrum-dev
Spectra analysis library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Spectrum library for ROOT.

libroot-html-dev
Html documentation generator for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of classes to automatically extract documentation from marked up sources.

libroot-io-dev
Input/output of ROOT objects - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package provides development files of I/O routines for ROOT objects.

libroot-io-xmlparser-dev
XML parser of ROOT objects - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package provides development files of XML parser routines for ROOT objects.

libroot-math-foam-dev
Compact Version of Cellular Event Generator - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

The general-purpose self-adapting Monte Carlo (MC) event generator/simulator mFOAM (standing for mini-FOAM) is a new compact version of the FOAM program, with a slightly limited functionality with respect to its parent version. On the other hand, mFOAM is easier to use for the average user.

This package provides development files of the compact version of Cellular Event Generator.

libroot-math-genvector-dev
Generalized vector library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Genvector library for ROOT, provides a generalized vector library.

libroot-math-mathcore-dev
Core mathemathics library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the MathCore library for ROOT.

libroot-math-mathmore-dev
GSL interface library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the MathMore library for ROOT, a partial GNU Scientific Library interface.

libroot-math-matrix-dev
Matrix library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Matrix library for ROOT.

libroot-math-minuit-dev
Minuit plugin for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the MINUIT plug-in for ROOT, provides a fitting algorithm for ROOT.

libroot-math-mlp-dev
Multi layer perceptron extension for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the mlp plug-in for ROOT, provides a Multi Layer Perceptron Neural Network package for ROOT.

libroot-math-physics-dev
Physics library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Physics library for ROOT.

libroot-math-quadp-dev
QuadP extension for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the QuadP plug-in for ROOT. This provides the user a framework in which to do Quadratic Programming. The quadratic programming problem involves minimization of a quadratic function subject to linear constraints.

libroot-math-smatrix-dev
Sparse matrix library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Smatrix library for ROOT.

libroot-math-splot-dev
Splot library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

A common method used in High Energy Physics to perform measurements is the maximum Likelihood method, exploiting discriminating variables to disentangle signal from background. The crucial point for such an analysis to be reliable is to use an exhaustive list of sources of events combined with an accurate description of all the Probability Density Functions (PDF).

To assess the validity of the fit, a convincing quality check is to explore further the data sample by examining the distributions of control variables. A control variable can be obtained for instance by removing one of the discriminating variables before performing again the maximum Likelihood fit: this removed variable is a control variable. The expected distribution of this control variable, for signal, is to be compared to the one extracted, for signal, from the data sample. In order to be able to do so, one must be able to unfold from the distribution of the whole data sample.

The SPlot method allows one to reconstruct the distributions for the control variable, independently for each of the various sources of events, without making use of any a priori knowledge on this variable. The aim is thus to use the knowledge available for the discriminating variables to infer the behaviour of the individual sources of events with respect to the control variable.

SPlot is optimal if the control variable is uncorrelated with the discriminating variables.

This package provides development files of Splot library for ROOT.

libroot-math-unuran-dev
Random number generator library - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

It contains universal (also called automatic or black-box) algorithms that can generate random numbers from large classes of continuous or discrete distributions, and also from practically all standard distributions.

To generate random numbers the user must supply some information about the desired distribution, especially a C-function that computes the density and - depending on the chosen methods - some additional information (like the borders of the domain, the mode, the derivative of the density ...). After a user has given this information an init-program computes all tables and constants necessary for the random variate generation. The sample program can then generate variates from the desired distribution.

This package contains the development files

libroot-misc-memstat-dev
Memory statistics tool for use with ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains the development files of memory statistics tool for debugging memory leaks and such.

libroot-misc-minicern-dev
Small version of CERNLIB for use with ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the mini CERNLIB library for ROOT.

libroot-misc-table-dev
Table library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains the development files of Table library for ROOT.

libroot-montecarlo-eg-dev
Event generator library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Eg library for ROOT.

libroot-montecarlo-vmc-dev
Virtual Monte-Carlo library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Vmc library for ROOT.

libroot-net-auth-dev
Authentication extension for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the basic authentication algorithms used by ROOT.

libroot-net-bonjour-dev
Zeroconf extension for ROOT
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains classes for declaring zeroconf services, as well as browsing for such services. This package contains the development libraries and headers.

libroot-net-dev
Net library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Net library for ROOT.

libroot-net-ldap-dev
LDAP extension for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains the development files of LDAP plugin for ROOT.

libroot-proof-dev
PROOF library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the PROOF library for ROOT. This provides a client to use in a PROOF environment.

libroot-proof-proofplayer-dev
PROOF plugin for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the PROOF extension for ROOT. This provides a client to use in a PROOF environment.

libroot-roofit-dev
ROOT extension for modeling expected distributions - development
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

The RooFit packages provide a toolkit for modeling the expected distribution of events in a physics analysis. Models can be used to perform likelihood fits, produce plots, and generate "toy Monte Carlo" samples for various studies. The RooFit tools are integrated with the object-oriented and interactive ROOT graphical environment.

RooFit has been developed for the BaBar collaboration, a high energy physics experiment at the Stanford Linear Accelerator Center, and is primarily targeted to the high-energy physicists using the ROOT analysis environment, but the general nature of the package make it suitable for adoption in different disciplines as well.

This package provides development files of RooFit.

libroot-static
Static archive of ROOT libraries
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains static archive of the ROOT classes.

libroot-tmva-dev
Toolkit for multivariate data analysis - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

The Toolkit for Multivariate Analysis (TMVA) provides a ROOT-integrated environment for the parallel processing and evaluation of MVA techniques to discriminate signal from background samples. It presently includes (ranked by complexity):

  • Rectangular cut optimisation
  • Correlated likelihood estimator (PDE approach)
  • Multi-dimensional likelihood estimator (PDE - range-search approach)
  • Fisher (and Mahalanobis) discriminant
  • H-Matrix (chi-squared) estimator
  • Artificial Neural Network (two different implementations)
  • Boosted Decision Trees

The TMVA package includes an implementation for each of these discrimination techniques, their training and testing (performance evaluation). In addition all these methods can be tested in parallel, and hence their performance on a particular data set may easily be compared.

This package provides development files of TMVA package for ROOT.

libroot-tree-dev
Tree library for ROOT - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package contains development files of the Tree library for ROOT.

libroot-tree-treeplayer-dev
Library to loop over a ROOT tree - development files
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The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data efficiently.

This package provides development files to loop over a ROOT tree.

libsiscone-dev
Seedless Infrared Safe Cone jet finder - development files
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SISCone implements a seedless infrared (IR) safe cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

This package provides development files of SISCone.

libsiscone-spherical-dev
Spherical version of SISCone - development files
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SISCone implements a seedless infrared (IR) safe cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

The spherical version of SISCone is designed for use in e+e- collisions.

This package provides development files of spherical version of SISCone.

libthepeg-dev
Development library of ThePEG
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ThePEG is a general toolkit for implementing physics models of event generation in high energy particle collisions. It defines a general structure of event generation in terms of abstract base classes for e.g. hard partonic matrix elements, parton showers and the decay of unstable particles. Different models are then implemented by creating classes which inherits from these base classes and implements sets of pre-defined virtual functions.

This package provides development library of ThePEG.

neuron-dev
Neuron simulation environment - Development files
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NEURON is a simulation environment for modeling individual neurons and networks of neurons. It provides tools for conveniently building, managing, and using models in a way that is numerically sound and computationally efficient. It is particularly well-suited to problems that are closely linked to experimental data, especially those that involve cells with complex anatomical and biophysical properties.

This package contains development files for the NEURON environment.

python3-dials
Diffraction Integration for Advanced Light Sources - Python3
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The DIALS software is developed in a fully open-source, collaborative environment. The main development teams are based at Diamond Light Source and CCP4, in the UK, and at Lawrence Berkeley National Laboratory, USA. However, in the spirit of the open source movement, we welcome collaboration from anyone who wishes to contribute to the project.

To avoid “reinventing the wheel” as much as possible, the DIALS project builds on knowledge accumulated over many decades in the field of crystallographic data processing. We benefit greatly from the altruism of experts who contribute their ideas and advice, either directly or via their detailed publications on existing algorithms and packages such as XDS [2] and MOSFLM [3]. At the heart of the DIALS framework lies a design philosophy of hardware abstraction and a generalised model of the experiment that is inspired directly by material published on the seminal workshops on position sensitive detector software [1]. Continuing in the spirit of these workshops we held our own series of meetings, with talks from invited speakers, and code camps in which specific problems are addressed by intensive effort across the collaboration. Summaries of these meetings and copies of slides given as presentations are available here.

DIALS is written using Python and C++, making heavy use of the cctbx [4] for core crystallographic calculations and much infrastructure including a complete build system. Seamless interaction between the C++ and Python components of this hybrid system is enabled by Boost.Python. Python provides a useful ground for rapid prototyping, after which core algorithms and data structures may be transferred over to C++ for speed. High level interfaces of the hybrid system remain in Python, facilitating further development and code reuse both within DIALS and by third parties.

This is the Python 3 version of the package.

python3-mpiplus
Python GPU framework for alchemical free energy calculations (Python 3)
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GPU-accelerated Python framework for exploring algorithms for alchemical free energy calculations.

python3-neuron
Neuron simulation environment - Python bindings
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NEURON is a simulation environment for modeling individual neurons and networks of neurons. It provides tools for conveniently building, managing, and using models in a way that is numerically sound and computationally efficient. It is particularly well-suited to problems that are closely linked to experimental data, especially those that involve cells with complex anatomical and biophysical properties.

This package contains Python bindings for NEURON.

python3-pymbar
Python implementation of the multistate Bennett acceptance ratio (MBAR)
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Pymbar is a library that provides tools for optimally combining simulations from multiple thermodynamic states using maximum likelihood methods to compute free energies (normalization constants) and expectation values from all of the samples simultaneously.

This package installs the library for Python 3.

Please cite: Michael R. Shirts and John D. Chodera: Statistically optimal analysis of samples from multiple equilibrium states. The Journal of Chemical Physics 129(12):124105 (2008)
rivet-plugins-dev
Template generator of Rivet analysis plugin
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Rivet is a toolkit for validation of Monte Carlo event generators. Using a computationally efficient model for observable computations, Rivet provides a set of experimental analyses useful for generator sanity checks, as well as a convenient infrastructure for adding your own analysis.

This package provides template generator of Rivet analysis plugin.

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ckon
automatic build tool for ROOT data analysis software
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ckon is a C++ program/tool which automatically takes care of compilation, dictionary generation and linking of programs and libraries developed for data analyses within the CERN ROOT analysis framework. This includes parsing include headers to figure out which libraries the main programs need to be linked to. It uses automake/autoconf to be platform independent and GNU install compliant. In addition, m4 macros are automatically downloaded and the according compiler flags included based on a list of boost libraries provided in the config file. For the purpose of YAML database usage, a m4 macro can be downloaded during setup to link against the yaml-cpp library.

clhep-doc
Documentation of CLHEP
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CLHEP provides a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra.

This package provides HTML documentation of CLHEP.

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Documentation of FastJet
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The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides documentation of FastJet.

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Example source files of FastJet
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The FastJet package provides a fast implementation of several longitudinally invariant sequential recombination jet algorithms, in particular the longitudinally invariant kt jet algorithm, the inclusive longitudinally invariant version of the Cambridge/Aachen jet-algorithm, and the inclusive anti-kt algorithm.

FastJet also provides a uniform interface to external jet finders via a plugin mechanism, and tools for calculating jet areas and performing background (pileup/UE) subtraction.

This package provides example source files of FastJet.

hepmc-examples
Event Record for Monte Carlo Generators - example files
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The HepMC package is an object oriented event record written in C++ for High Energy Physics Monte Carlo Generators.

Many extensions from HEPEVT, the Fortran HEP standard, are supported: the number of entries is unlimited, spin density matrices can be stored with each vertex, flow patterns (such as color) can be stored and traced, integers representing random number generator states can be stored, and an arbitrary number of event weights can be included. Particles and vertices are kept separate in a graph structure, physically similar to a physics event.

The added information supports the modularisation of event generators. Event information is accessed by means of iterators supplied with the package.

This package provides example source files of HepMC.

hepmc-reference-manual
Event Record for Monte Carlo Generators - Reference Manual
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The HepMC package is an object oriented event record written in C++ for High Energy Physics Monte Carlo Generators.

Many extensions from HEPEVT, the Fortran HEP standard, are supported: the number of entries is unlimited, spin density matrices can be stored with each vertex, flow patterns (such as color) can be stored and traced, integers representing random number generator states can be stored, and an arbitrary number of event weights can be included. Particles and vertices are kept separate in a graph structure, physically similar to a physics event.

The added information supports the modularisation of event generators. Event information is accessed by means of iterators supplied with the package.

This package provides HepMC2 Reference Manual.

hepmc-user-manual
Event Record for Monte Carlo Generators - User Manual
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The HepMC package is an object oriented event record written in C++ for High Energy Physics Monte Carlo Generators.

Many extensions from HEPEVT, the Fortran HEP standard, are supported: the number of entries is unlimited, spin density matrices can be stored with each vertex, flow patterns (such as color) can be stored and traced, integers representing random number generator states can be stored, and an arbitrary number of event weights can be included. Particles and vertices are kept separate in a graph structure, physically similar to a physics event.

The added information supports the modularisation of event generators. Event information is accessed by means of iterators supplied with the package.

This package provides HepMC2 User Manual.

lhapdf-ccwrap-doc
C++ Bindings for LHAPDF - documentation
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LHAPDF provides a unified and easy to use interface to modern PDF sets. It is designed to work not only with individual PDF sets but also with the more recent multiple "error" sets. It can be viewed as the successor to PDFLIB, incorporating many of the older sets found in the latter, including pion and photon PDFs. In LHAPDF the computer code and input parameters/grids are separated thus allowing more easy updating and no limit to the expansion possibilities.

This package provides documentation of C++ bindings for LHAPDF.

pythia8-doc-html
HTML Documentation of PYTHIA8
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PYTHIA is a program for the generation of high-energy physics events, i.e. for the description of collisions at high energies between elementary particles such as e+, e-, p and pbar in various combinations. It contains theory and models for a number of physics aspects, including hard and soft interactions, parton distributions, initial- and final-state parton showers, multiple interactions, fragmentation and decay.

This package provides HTML documentation files of PYTHIA8.

pythia8-doc-worksheet
Worksheet Documentation of PYTHIA8
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PYTHIA is a program for the generation of high-energy physics events, i.e. for the description of collisions at high energies between elementary particles such as e+, e-, p and pbar in various combinations. It contains theory and models for a number of physics aspects, including hard and soft interactions, parton distributions, initial- and final-state parton showers, multiple interactions, fragmentation and decay.

The Worksheet of PYTHIA8 teachs you the basics of how to use the PYTHIA 8.1 event generator to study various physics aspects.

pythia8-examples
Example source files of PYTHIA8
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PYTHIA is a program for the generation of high-energy physics events, i.e. for the description of collisions at high energies between elementary particles such as e+, e-, p and pbar in various combinations. It contains theory and models for a number of physics aspects, including hard and soft interactions, parton distributions, initial- and final-state parton showers, multiple interactions, fragmentation and decay.

This package provides example source files of PYTHIA8.

refmac-dictionary
dictionary for macromolecular refinement and model building
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Dictionary of ligands and constituent blocks (e.g. amino acids, nucleic acids, sugars) contains necessary stereochemical information (e.g. bond lengths, angles, torsion angles) about small molecules used in refinement and model building. Values in the dictionary are for an abstract form of monomers, i.e there is no conformational/configurational or environment dependence.

rivet-plugins-doc
HTML documentation for Rivet analysis plugins
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Rivet is a toolkit for validation of Monte Carlo event generators. Using a computationally efficient model for observable computations, Rivet provides a set of experimental analyses useful for generator sanity checks, as well as a convenient infrastructure for adding your own analysis.

This package provides HTML documentation for analysis plugins of Rivet.

rivet-reference
Rivet code reference
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Rivet is a toolkit for validation of Monte Carlo event generators. Using a computationally efficient model for observable computations, Rivet provides a set of experimental analyses useful for generator sanity checks, as well as a convenient infrastructure for adding your own analysis.

This package provides code reference of Rivet.

rivet-user-manual
Rivet User Manual
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Rivet is a toolkit for validation of Monte Carlo event generators. Using a computationally efficient model for observable computations, Rivet provides a set of experimental analyses useful for generator sanity checks, as well as a convenient infrastructure for adding your own analysis.

This package provides user manual of Rivet.

siscone-doc-html
Developer's reference manual of SISCone (HTML)
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SISCone implements a Seedless Infrared (IR) Safe Cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

This package provides HTML Reference manual of SISCone.

siscone-doc-pdf
Developer's reference manual of SISCone (PDF)
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SISCone implements a Seedless Infrared (IR) Safe Cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

This package provides PDF Reference manual of SISCone.

siscone-examples
Seedless Infrared Safe Cone jet finder - example files
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SISCone implements a seedless infrared (IR) safe cone jet algorithm, it takes N^2ln(N) time to find jets among N particles, comparing to N2^N time of other algorithms.

This package provides example source files of SISCone.

thepeg-reference
Code reference of ThePEG
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ThePEG is a general toolkit for implementing physics models of event generation in high energy particle collisions. It defines a general structure of event generation in terms of abstract base classes for e.g. hard partonic matrix elements, parton showers and the decay of unstable particles. Different models are then implemented by creating classes which inherits from these base classes and implements sets of pre-defined virtual functions.

This package provides code reference of ThePEG generated by Doxygen.

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