Debian Science Project
Summary
Physics-dev
Debian Science Physics-dev-pakker

Denne metapakke vil installere Debian Science-pakker, som kan være nyttige for udvikling af matematikprogrammer.

Du kan også være interesseret i metapakken science-physics.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

Links to other tasks

Debian Science Physics-dev packages

Official Debian packages with high relevance

Fenics
Automated Solution of Differential Equations
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FEniCS er en samling af frie programmer til automatisk, effektiv løsning af differentialligninger.

FEniCS har en omfattende liste over funktioner, inklusive automatiserede løsning af variationsproblemer, automatiseret fejlkontrol og tilpasning, et omfattende bibliotek for begrænsede elementer, højtydende lineær algebra og meget mere.

FEniCS er organiseret som en samling af komponenter, der fungerer sammen, inklusive problemløsningsmiljøet DOLFIN, formularkompileren FFC, den begrænsede elementtabulator FIAT, just-in-time-kompileren Instant, grænseflade for kodeoprettelse UFC, formularsproget UFL og en række yderligere komponenter.

Dette er en metapakke, der afhænger af alle FEniCS-komponter.

Fftw-dev
bibliotek for beregning af Fast Fourier Transforms
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Dette bibliotek beregner FFT'er i en eller flere dimensioner. Den er ekstremt hurtig. Denne pakke indeholder det statistiske lænkede bibliotek og hovedfilerne.

Libasl-dev
development files for ASL
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The Advanced Simulation Library (ASL) is a free and open source hardware accelerated multiphysics simulation platform (and an extensible general purpose tool for solving Partial Differential Equations).

Its computational engine is written in OpenCL and utilizes matrix-free solution techniques which enable extraordinarily high performance, memory efficiency and deployability on a variety of massively parallel architectures, ranging from inexpensive FPGAs, DSPs and GPUs up to heterogeneous clusters and supercomputers. The engine is hidden entirely behind simple C++ classes, so that no OpenCL knowledge is required from application programmers. Mesh-free, immersed boundary approach allows one to move from CAD directly to simulation drastically reducing pre-processing efforts and amount of potential errors.

ASL can be used to model various coupled physical and chemical phenomena and employed in a multitude of fields: computational fluid dynamics, virtual sensing, industrial process data validation and reconciliation, image-guided surgery, computer-aided engineering, design space exploration, crystallography, etc...

This package contains the development files.

Please cite: Avtech Scientific <contact@avtechscientific.com>:
Libdeal.ii-dev
Differential Equations Analysis Library - development files
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deal.II is a C++ program library targeted at the computational solution of partial differential equations using adaptive finite elements. It uses state-of-the-art programming techniques to offer you a modern interface to the complex data structures and algorithms required.

This package contains the development files.

Libfeel++-dev
Et bibliotek for metoden »finite element«
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Tilbyder teksthovedfilerne og statiske biblioteker.

Feel++ er et omfattende »finite element-bibliotek« til løsning af partielle differentialligninger.

Understøtter 1D, 2D og 3D.

Understøtter de følgende basiselementer: Simplex (segment, trekant, tetraeder) og produkter af simplex såsom heksaeder.

Understøtter forskellige punktsæt på disse grundlæggende elementer: ækvidistante punkter, kvadraturpunkter, interpolationspunkter (Gauss- Lobatto, Fekete, WarpBlend?).

Understøtter kontinuerte og diskontinuerte Galerkinmetoder.

Understøtter forskellige polynomiumssæt:

  • Lagrange (kontinuert, diskontinuert, alle dimensioner, alle interpolationspunktmængder)

  • Dubiner (diskontinuert), randtilpasset (kontinuert)

  • Legendre (diskontinuert), randtilpasset (kontinuert)

Indeholder matematiske begreber for abstraktioner af højere orden (funktionsrum og associerede elementer, former og operatorer).

Tilbyder et sprog indlejret i C++ til variationelle formuleringer, projektion og numerisk integration.

Libfftw3-dev
Bibliotek for beregning af Fast Fourier Transforms - udvikling
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FFTW-biblioteket beregner Fast Fourier Transforms (FFT) i en eller flere dimensioner. Den er ekstrem hurtig. Denne pakke indeholder det statistisk lænkede bibliotek, hovedfiler og testprogrammer.

Denne pakke indeholder teksthovedfiler og statiske biblioteker. For dokumentation se libfftw3-doc.

Libnfft3-dev
development files for the NFFT library
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NFFT3 is a software library written in C for computing nonequispaced fast Fourier and related transformations. In detail, NFFT3 implements:

1) The nonequispaced fast Fourier transform (NFFT)

  • the forward transform (NFFT)
  • the adjoint transform (adjoint NFFT)

2) Generalisations of the NFFT

  • to arbitrary knots in time and frequency domain (NNFFT)
  • to the sphere S^2 (NFSFT)
  • to the hyperbolic cross (NSFFT)
  • to real-valued data, i.e. (co)sine transforms, (NFCT, NFST)
  • to the rotation group (NFSOFT)

3) Generalised inverses based on iterative methods, e.g. CGNR, CGNE

4) Applications in

  • medical imaging (i) magnetic resonance imaging (ii) computerised tomography
  • summation schemes (i) fast Gauss transform (FGT) (ii) singular kernels (iii) zonal kernels
  • polar FFT, discrete Radon transform, ridgelet transform

This package provides the development files for the NFFT library.

Please cite: J. Keiner, S. Kunis and D. Potts: Using NFFT 3 - a software library for various nonequispaced fast Fourier transforms. (eprint) ACM Trans. Math. Softw. 36(4):19-1-19-30 (2009)
Libopenctm-dev
Library headers for compression of 3D triangle meshes
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OpenCTM — the Open Compressed Triangle Mesh file format — is a file format, a software library and a tool set for compression of 3D triangle meshes. The geometry is compressed to a fraction of comparable file formats, and the format is easily accessible through a simple, portable API.

This package contains the development files needed for compiling programs using OpenCTM.

Libp4est-dev
Algorithms for Parallel Adaptive Mesh Refinement - development files
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The p4est software library enables the dynamic management of a collection of adaptive octrees, conveniently called a forest of octrees. p4est is designed to work in parallel and scale to hundreds of thousands of processor cores.

This package contains the development files.

Libplb-dev
CFD solver based on the lattice Boltzmann method. Development files
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A software tool for classical CFD, particle-based models and complex physical interaction, Palabos offers a powerful environment for your fluid flow simulations.

Through the innovative matrix-based interface, setting up a massively parallel simulation or developing a new physical model has become simpler than ever. The package contains development files.

Libxray-absorption-perl
x-ray absorption data for the elements
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Xray::Absorption supports access to X-ray absorption data. It is designed to be a transparent interface to absorption data from a variety of sources. Currently, the only sources of data are the 1969 McMaster tables, the 1999 Elam tables, the 1993 Henke tables, and the 1995 Chantler tables. The Brennan-Cowen implementation of the Cromer-Liberman tables is available as a drop-on-top addition to this package. More resources can be added easily.

Libxray-scattering-perl
x-ray scattering data for the elements
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Xray::Scattering supports access to X-ray scattering data for atoms and ions. It is designed to be a transparent interface to scattering data from a variety of sources. Currently, the only sources of data are the Cromer-Mann tables from the International Tables of Crystallography and the 1995 Waasmaier-Kirfel tables. More resources can be added easily.

Libxray-spacegroup-perl
Symmetrioperationer for krystalrumsgrupper
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Xray::SpaceGroup tilbyder en objektorienteret grænseflade til en database for rumgruppesymmetrier transskriberet fra bind A i »International Tables of Crystallography«.

Pyfai
Fast Azimuthal Integration-skripter
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PyFAI er et Pythonbibliotek for azimuthal integration; biblioteket giver mulighed for konvertering af diffraktionsbilleder taget med 2D-detektorer såsom CCD-kameraer til X-røntgen pulverbilleder, som kan bruges af andre programmer såsom Rietvelds forfiningsværktøjer (dvs. FullPorf), faseanalyse eller teksturanalyse.

Da PyFAI er et bibliotek, dets hovedformål er at være integreret i andre værktøjer såsom PyMca, LiMa eller EDNA. For at udføre dataanalyse på nettet skal den præcise beskrivelse af den eksperimentelle opsætning være kendt. Dette er årsagen til, at PyFAI inkluderer optimeringskode for geometri der arbejder på »powder rings« fra referenceprøver. Alternativt kan PyFAI også importere geometrier tilpasset med andre værktøjer såsom Fit2D.

PyFAI er blevet designet til at fungere med enhver slags detektor med enhver geometri (transmission, reflektion, off-axis ...). Den bruger Pythonbiblioteket FabIO til at læse de fleste billeder taget af diffractometer.

Python3-dolfin
Pythongrænseflade for DOLFIN - Python 3
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DOLFIN er Python- og C++-grænsefladen for FEniCS-projektet for den automatiserede løsning for differentialligninger, der tilbyder et konsistent PSE (Problem Solving Environment) for løsning af ordinære og delvise differentialligninger. De vigtigste funktioner er en simpel, konsistent og intuitiv objektorienteret API; automatisk og effektiv evaluering af sæsonformer; automatisk og effektiv samling af lineære systemer; og understøttelse af generelle familier af finitte elementer.

Denne pakke indeholder Pythongrænsefladen for DOLFIN (Python 3).

Python3-gpyfft
Omslag for OpenCL FFT-biblioteket clFFT - Python 3
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Dette Pythonomslag er designet til tæt integration med PyOpenCL. Det består af et Cython-baseret omslag på lavt niveau med en grænseflade svarende til det underliggende C-bibliotek. Oven på dette tilbydes en grænseflade på højt niveau til arbejde på data indeholdt i instanser af pyopencl.array.Array, en numpy arbejdslignende tabelklasse for GPU-beregninger. Grænsefladen har fået lidt inspiration fra pyFFTW. For detaljer om grænsefladen se fft.py.

Denne pakke installerer biblioteket for Python 3.

Python3-ltfatpy
Large Time-Frequency Toolbox (LTFAT) in Python
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The ltfatpy package is a partial Python port of the Large Time/Frequency Analysis Toolbox (LTFAT), a MATLAB®/Octave toolbox for working with time-frequency analysis and synthesis.

It is intended both as an educational and a computational tool.

The package provides a large number of linear transforms including Gabor transforms along with routines for constructing windows (filter prototypes) and routines for manipulating coefficients.

This package provides the modules for Python 3.

Python3-multipletau
multiple-tau algorithm for Python3/NumPy
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Multiple-tau correlation is computed on a logarithmic scale (less data points are computed) and is thus much faster than conventional correlation on a linear scale such as numpy.correlate

An online reference is available at http://paulmueller.github.io/multipletau

This is the Python 3 version of the package

Python3-pygalmesh
Python 3 frontend to CGAL's 3D mesh generators
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pygalmesh makes it easy to create high-quality 3D volume and surface meshes.

CGAL offers two different approaches for mesh generation:

  • Meshes defined implicitly by level sets of functions.
  • Meshes defined by a set of bounding planes.

pygalmesh provides a front-end to the first approach, which has the following advantages and disadvantages:

  • All boundary points are guaranteed to be in the level set within any specified residual. This results in smooth curved surfaces.
  • Sharp intersections of subdomains (e.g., in unions or differences of sets) need to be specified manually (via feature edges, see below), which can be tedious.

On the other hand, the bounding-plane approach (realized by mshr), has the following properties:

  • Smooth, curved domains are approximated by a set of bounding planes, resulting in more of less visible edges.
  • Intersections of domains can be computed automatically, so domain unions etc. have sharp edges where they belong.

pygalmesh and mshr are therefore complementary.

pygalmesh also interfaces CGAL's 3D periodic mesh generation.

This package installs the pygalmesh module for Python 3.

It also provides the utility scripts pygalmesh-from-inr and pygalmesh-volume-from-surface for generating volume meshes from INR or surface meshes.

Python3-pynfft
Pythonbindinger til NFFT3-biblioteket - Python 3
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Denne pakke tilbyder Pythonbindingerne til NFFT-biblioteket, nyttig til udførelse af Fouriertranformeringer på ikke-ensartede samplede data med effektiv hastighed. Bindingerne blev oprettet via Cython og fjerner oprettelsen og kørslen af NFFT-planer via brug af klasser.

Denne pakke tilbyder Python 3-versionen af bindingerne.

Python3-quantities
Library for computation of physical quantities with units, based on numpy
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Quantities is designed to handle arithmetic and conversions of physical quantities, which have a magnitude, dimensionality specified by various units, and possibly an uncertainty. Quantities builds on the popular numpy library and is designed to work with numpy ufuncs, many of which are already supported.

Sfftw-dev
bibliotek for beregning af Fast Fourier Transforms
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fieldmathematics
roledevel-lib
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Dette bibliotek beregner FFT'er i en eller flere dimensioner. Den er ekstremt hurtig. Denne pakke indeholder det statistiske lænkede bibliotek og hovedfilerne.

Trilinos-all-dev
Objektorienteret ramme for problemer i stor skala - udviklingsfiler (ALL)
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Newer upstream!
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Trilinosprojektet er en indsats til at udvikle algoritmer og aktivere teknologier i en objektorienteret programramme til løsning af komplekse flerfysik ingeniør- og videnskabelige problemer i stor skala. En unik designfunktion hos Trilios er dets fokus på pakker.

Denne pakke afhænger af alle udviklingspakkerne for Trilinos.

Please cite: Michael Heroux, Roscoe Bartlett, Vicki Howle Robert Hoekstra, Jonathan Hu, Tamara Kolda, Richard Lehoucq, Kevin Long, Roger Pawlowski, Eric Phipps, Andrew Salinger, Heidi Thornquist, Ray Tuminaro, James Willenbring and Alan Williams: An Overview of Trilinos (SAND2003-2927) (2003)

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Libtriangle-dev
High-quality 2-D mesh generator development files
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Triangle is a library/program for meshing 2-D surfaces and manifolds.

This package contains its static library, headers, and shared library symbolic link, which are needed to compile programs using the triangle library.

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