Debian Science Project
Summary
Physics-dev
pacchetti Debian Science per la fisica - sviluppo

Questo metapacchetto installa i pacchetti Debian Science che potrebbero essere utili per lo sviluppo di applicazioni relative alla matematica.

Si potrebbe essere interessati anche al metapacchetto science-physics.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

Links to other tasks

Debian Science Physics-dev packages

Official Debian packages with high relevance

Fenics
Automated Solution of Differential Equations
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FEniCS is a collection of free software for automated, efficient solution of differential equations.

FEniCS has an extensive list of features, including automated solution of variational problems, automated error control and adaptivity, a comprehensive library of finite elements, high performance linear algebra and many more.

FEniCS is organized as a collection of interoperable components, including the problem-solving environment DOLFIN, the form compiler FFC, the finite element tabulator FIAT, the just-in-time compiler Instant, the code generation interface UFC, the form language UFL and a range of additional components.

This is a metapackage which depends on all FEniCS components.

This is the legacy version of FEniCS. You may want to consider installing the next-generation FEniCS-X (fenicx package).

Fftw-dev
libreria per calcolare la trasformata di Fourier veloce (FFT)
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Questa libreria calcola le trasformate di Fourier veloci in una o più dimensioni. È estremamente veloce. Questo pacchetto contiene le librerie linkate staticamente e i file header.

Libasl-dev
file di sviluppo per ASL
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ASL (Advanced Simulation Library) è una piattaforma di simulazione multi-fisica, accelerata in hardware, open source e gratuita (e uno strumento estensibile di uso generale per risolvere equazioni differenziali alle derivate parziali).

Il suo motore di calcolo è scritto in OpenCL e usa tecniche risolutive senza matrici che permettono prestazioni straordinariamente elevate, efficienza nell'uso della memoria e messa in produzione su una varietà di architetture massicciamente parallele, che vanno da FPGA, DSP e GPU economici fino a cluster eterogenei e supercomputer. Il motore è nascosto interamente dietro a semplici classi C++, in modo che ai programmatori delle applicazioni non è richiesta alcuna conoscenza di OpenCL. Un approccio immersed boundary, mesh-free, permette di muoversi dal CAD direttamente alla simulazione riducendo drasticamente gli sforzi di pre-elaborazione e la quantità di errori potenziali.

ASL può essere usata per modellare vari fenomeni chimici e fisici accoppiati e impiegata in una moltitudine di campi: fluido-dinamica computazionale, percezione virtuale, riconciliazione e validazione di dati di processi industriali, chirurgia guidata da immagini, ingegneria assistita dal computer, esplorazione dello spazio di progetto, cristallografia, ecc.

Questo pacchetto contiene i file di sviluppo.

Please cite: Avtech Scientific <contact@avtechscientific.com>:
Libdeal.ii-dev
Differential Equations Analysis Library - development files
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deal.II is a C++ program library targeted at the computational solution of partial differential equations using adaptive finite elements. It uses state-of-the-art programming techniques to offer you a modern interface to the complex data structures and algorithms required.

This package contains the development files.

Libfeel++-dev
libreria per il metodo degli elementi finiti
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Fornisce i file header e le librerie statiche.

Feel++ è una libreria versatile per elementi finiti per risolvere equazioni differenziali alle derivate parziali.

Gestisce 1D, 2D e 3D.

Gestisce le seguenti entità basilari: simplessi (segmento, triangolo, tetraedro) e prodotti di simplessi (quadrangolo, esaedro).

Gestisce diversi insiemi di punti su queste entità basilari: punti equispaziati, punti di quadratura, punti di interpolazione (Gauss-Lobatto, Fekete, WarpBlend?).

Gestisce metodi di Galerkin continui e discontinui.

Gestisce diversi insiemi polinomiali:

  • Lagrange (continuo, discontinuo, tutte le dimensioni, tutti gli insiemi di punti di interpolazione);

  • Dubiner (discontinuo), confini adattati (continuo);

  • Legendre (discontinuo), confini adattati (continuo).

Fornisce concetti matematici per astrazioni di ordine superiore (spazi di funzioni ed elementi associati, forme e operatori).

Fornisce un linguaggio inglobato nel C++ per formulazioni variazionali, proiezione e integrazione numerica.

Libfftw3-dev
libreria per calcolare le trasformate di Fourier veloci (FFT) - sviluppo
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La libreria FFTW calcola le trasformate di Fourier veloci (FFT) in una o più dimensioni. È estremamente veloce. Questo pacchetto contiene la libreria linkata staticamente, i file header e i programmi di test.

Questo pacchetto contiene i file header e le librerie statiche. Per la documentazione vedere libfftw3-doc.

Please cite: Matteo Frigo and Steven G. Johnson: The Design and Implementation of FFTW3. (eprint) 93(2):216–231 (2005)
Registry entries: SciCrunch 
Libnfft3-dev
development files for the NFFT library
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NFFT3 is a software library written in C for computing nonequispaced fast Fourier and related transformations. In detail, NFFT3 implements:

1) The nonequispaced fast Fourier transform (NFFT)

  • the forward transform (NFFT)
  • the adjoint transform (adjoint NFFT)

2) Generalisations of the NFFT

  • to arbitrary knots in time and frequency domain (NNFFT)
  • to the sphere S^2 (NFSFT)
  • to the hyperbolic cross (NSFFT)
  • to real-valued data, i.e. (co)sine transforms, (NFCT, NFST)
  • to the rotation group (NFSOFT)

3) Generalised inverses based on iterative methods, e.g. CGNR, CGNE

4) Applications in

  • medical imaging (i) magnetic resonance imaging (ii) computerised tomography
  • summation schemes (i) fast Gauss transform (FGT) (ii) singular kernels (iii) zonal kernels
  • polar FFT, discrete Radon transform, ridgelet transform

This package provides the development files for the NFFT library.

Please cite: J. Keiner, S. Kunis and D. Potts: Using NFFT 3 - a software library for various nonequispaced fast Fourier transforms. (eprint) ACM Trans. Math. Softw. 36(4):19-1-19-30 (2009)
Libopenctm-dev
header di libreria per comprimere griglie di triangoli 3D
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OpenCTM, il formato di file Open Compressed Triangle Mesh, è un formato di file, una libreria software e un insieme di strumenti per comprimere griglie di triangoli 3D. La geometria è compressa a una frazione dei formati di file paragonabili e il formato è facilmente accessibile attraverso un'API semplice e portabile.

Questo pacchetto contiene i file di sviluppo necessari per compilare programmi che usano OpenCTM.

Libp4est-dev
Algorithms for Parallel Adaptive Mesh Refinement - development files
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The p4est software library enables the dynamic management of a collection of adaptive octrees, conveniently called a forest of octrees. p4est is designed to work in parallel and scale to hundreds of thousands of processor cores.

This package contains the development files.

Libplb-dev
CFD solver based on the lattice Boltzmann method. Development files
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A software tool for classical CFD, particle-based models and complex physical interaction, Palabos offers a powerful environment for your fluid flow simulations.

Through the innovative matrix-based interface, setting up a massively parallel simulation or developing a new physical model has become simpler than ever. The package contains development files.

Libxray-absorption-perl
x-ray absorption data for the elements
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Xray::Absorption supports access to X-ray absorption data. It is designed to be a transparent interface to absorption data from a variety of sources. Currently, the only sources of data are the 1969 McMaster tables, the 1999 Elam tables, the 1993 Henke tables, and the 1995 Chantler tables. The Brennan-Cowen implementation of the Cromer-Liberman tables is available as a drop-on-top addition to this package. More resources can be added easily.

Libxray-scattering-perl
x-ray scattering data for the elements
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Xray::Scattering supports access to X-ray scattering data for atoms and ions. It is designed to be a transparent interface to scattering data from a variety of sources. Currently, the only sources of data are the Cromer-Mann tables from the International Tables of Crystallography and the 1995 Waasmaier-Kirfel tables. More resources can be added easily.

Libxray-spacegroup-perl
symmetry operations for the crystal space groups
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Xray::SpaceGroup provides an object-oriented interface to a database of space group symmetries transcribed from volume A of the International Tables of Crystallography.

Pyfai
script per integrazione azimutale veloce
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PyFAI è una libreria Python per integrazione azimutale; permette la conversione di immagini di diffrazione riprese con rilevatori 2D come telecamere CCD in pattern di diffrazione da polveri dei raggi X che possono essere usati da altri software come gli strumenti di raffinamento Rietveld (cioè FullProf), analisi di fase o analisi di texture.

Siccome PyFAI è una libreria, il suo obiettivo principale è di essere integrata in altri strumenti come PyMca, LiMa o EDNA. Per eseguire analisi di dati in linea, la descrizione precisa delle condizioni sperimentali deve essere conosciuta. Questa è la ragione per cui PyFAI include codice per l'ottimizzazione delle geometrie che lavora su "powder ring" dei campioni di riferimento. Alternativamente, PyFAI può anche importare geometrie di cui si è fatto il fit con altri strumenti come Fit2D.

PyFAI è stata progettata per funzionare con qualsiasi tipo di rivelatore con qualsiasi geometria (trasmissione, riflessione, fuori asse, ...). Usa la libreria FabIO Python per leggere la maggior parte delle immagini riprese dai diffrattometri.

Python3-dolfin
Base Python interface for DOLFIN (Python 3)
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DOLFIN is the Python and C++ interface of the FEniCS project for the automated solution of differential equations, providing a consistent PSE (Problem Solving Environment) for solving ordinary and partial differential equations. Key features include a simple, consistent and intuitive object-oriented API; automatic and efficient evaluation of variational forms; automatic and efficient assembly of linear systems; and support for general families of finite elements.

This is the base package depending on specific dolfin builds. By default the version built against the preferred version of PETSc in /usr/lib/petsc is selected (with 32-bit indexing, but the alternative version (64-bit PETSc) can be selected by setting the environment variable PETSC_DIR.

This is the legacy version of DOLFIN, you may want to install the next-generation python3-dolfinx (DOLFIN-X) instead.

Python3-gpyfft
wrapper per la libreria clFFT per FFT di OpenCL (Python 3)
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Questo wrapper Python è progettato per integrarsi strettamente con PyOpenCL. Consiste di un wrapper di basso livello basato su Cython con un'interfaccia simile alla libreria C sottostante. Al di sopra di essa offre un'interfaccia di alto livello progettata per lavorare su dati contenuti in istanze di pyopencl.array.Array, una classe di array per calcoli con GPU che funziona come numpy. L'interfaccia di alto livello prende ispirazione da pyFFTW. Per i dettagli sull'interfaccia di alto livello vedere fft.py.

Questo pacchetto installa la libreria per Python 3.

Python3-ltfatpy
Large Time-Frequency Toolbox (LTFAT) in Python
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Il pacchetto ltfatpy è un port parziale in Python del Large Time/Frequency Analysis Toolbox (LTFAT), una cassetta degli attrezzi per lavorare con sintesi e analisi tempo-frequenza in MATLAB®/Octave.

È pensato sia come strumento educativo che di calcolo.

Il pacchetto fornisce un gran numero di trasformazioni lineari incluse le trasformazioni di Gabor insieme alle routine per costruire finestre (prototipi di filtri) e routine per manipolare coefficienti.

Questo pacchetto fornisce i moduli per Python 3.

Python3-multipletau
algoritmo multiple-tau per Python3/NumPy
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La correlazione multiple-tau è calcolata su scala logaritmica (vengono calcolati meno punti dati) ed è perciò molto più veloce della correlazione convenzionale su scala lineare come "numpy.correlate".

Un riferimento online è disponibile su http://paulmueller.github.io/multipletau

Questa è la versione per Python 3 del pacchetto.

Python3-pygalmesh
Python 3 frontend to CGAL's 3D mesh generators
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pygalmesh makes it easy to create high-quality 3D volume and surface meshes.

CGAL offers two different approaches for mesh generation:

  • Meshes defined implicitly by level sets of functions.
  • Meshes defined by a set of bounding planes.

pygalmesh provides a front-end to the first approach, which has the following advantages and disadvantages:

  • All boundary points are guaranteed to be in the level set within any specified residual. This results in smooth curved surfaces.
  • Sharp intersections of subdomains (e.g., in unions or differences of sets) need to be specified manually (via feature edges, see below), which can be tedious.

On the other hand, the bounding-plane approach (realized by mshr), has the following properties:

  • Smooth, curved domains are approximated by a set of bounding planes, resulting in more of less visible edges.
  • Intersections of domains can be computed automatically, so domain unions etc. have sharp edges where they belong.

pygalmesh and mshr are therefore complementary.

pygalmesh also interfaces CGAL's 3D periodic mesh generation.

This package installs the pygalmesh module for Python 3.

It also provides the utility scripts pygalmesh-from-inr and pygalmesh-volume-from-surface for generating volume meshes from INR or surface meshes.

Python3-pynfft
collegamenti Python alla libreria NFFT3 - Python 3
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Questo pacchetto fornisce i collegamenti Python alla libreria NFFT, utile per effettuare trasformate di Fourier su dati campionati in maniera non uniforme con velocità efficiente. I collegamenti sono stati generati usando Cython ed astraggono la creazione ed esecuzione di piani NFFT usando classi.

Questo pacchetto fornisce la versione Python 3 dei collegamenti.

Python3-pyode
Python bindings for The Open Dynamics Engine
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PyODE is a set of open-source Python bindings for The Open Dynamics Engine, an open-source physics engine. PyODE also includes an XODE parser.

This package provides PyODE for supported versions of Python.

Python3-quantities
Library for computation of physical quantities with units, based on numpy
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Quantities is designed to handle arithmetic and conversions of physical quantities, which have a magnitude, dimensionality specified by various units, and possibly an uncertainty. Quantities builds on the popular numpy library and is designed to work with numpy ufuncs, many of which are already supported.

Sfftw-dev
libreria per calcolare la trasformata di Fourier veloce (FFT)
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Questa libreria calcola le trasformate di Fourier veloci in una o più dimensioni. È estremamente veloce. Questo pacchetto contiene le librerie linkate staticamente e i file header.

Trilinos-all-dev
object-oriented framework for large-scale problems - development files (ALL)
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The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.

This package depends on all Trilinos development packages.

Please cite: Michael Heroux, Roscoe Bartlett, Vicki Howle Robert Hoekstra, Jonathan Hu, Tamara Kolda, Richard Lehoucq, Kevin Long, Roger Pawlowski, Eric Phipps, Andrew Salinger, Heidi Thornquist, Ray Tuminaro, James Willenbring and Alan Williams: An Overview of Trilinos (SAND2003-2927) (2003)

Debian packages in contrib or non-free

Libtriangle-dev
High-quality 2-D mesh generator development files
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Triangle is a library/program for meshing 2-D surfaces and manifolds.

This package contains its static library, headers, and shared library symbolic link, which are needed to compile programs using the triangle library.

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