Debian Science Project
Summary
Biology
paquets Debian Science concernant la biologie

Ce métapaquet installe les paquets de Debian Science concernant la biologie. Vous pouvez également être intéressé par le debtag field::biology.

Ce métapaquet utilise les paquets med-bio et med-bio-dev (pour le développement d'applications biologiques) qui sont maintenus par Debian Med – une autre saveur pure Debian. Si vous êtes biologiste, vous serez probablement plus intéressé par le projet Debian Med qui traite de biologie et médecine beaucoup plus en détail que le projet plus général Debian Science.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

Links to other tasks

Debian Science Biology packages

Official Debian packages with high relevance

Avida-base
Auto-adaptive genetic system for Artificial Life research
Maintainer: Miriam Ruiz (Bas Zoetekouw)
Versions of package avida-base
ReleaseVersionArchitectures
squeeze2.0b7-4.2amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
Popcon: 1 users (0 upd.)*
Versions and Archs
License: DFSG free

Avida is an auto-adaptive genetic system designed primarily for use as a platform in Digital or Artificial Life research. In lay terms, Avida is a digital world in which simple computer programs mutate and evolve.

Avida allows us to study questions and perform experiments in evolutionalry dynamics and theoretical biology that are intractable in real biological system.

Homepage http://dllab.caltech.edu/avida/

Bauble
application de gestion de collection de biodiversité
Versions of package bauble
ReleaseVersionArchitectures
jessie0.9.7-2all
stretch0.9.7-2.1all
sid0.9.7-2.1all
wheezy0.9.7-2all
squeeze0.9.7-2all
Debtags of package bauble:
fieldbiology
interfacex11
roleprogram
uitoolkitgtk
useorganizing
x11application
Popcon: 2 users (0 upd.)*
Versions and Archs
License: DFSG free

Bauble est une application pour aider à gérer une collection de spécimens botaniques. Il est conçu pour être utilisé par les jardins botaniques, les herbiers, les arboretum, etc., pour gérer les informations sur leur collection. Il s'agit d'une alternative ouverte, libre et multiplateforme à BG-Base et logiciels similaires.

Critterding
évolution de la vie artificielle
Versions of package critterding
ReleaseVersionArchitectures
wheezy1.0-beta12.1-1.2amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie1.0-beta12.1-1.2amd64,armel,armhf,i386
stretch1.0-beta12.1-1.3amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
buster1.0-beta12.1-1.3amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
bullseye1.0-beta12.1-1.3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid1.0-beta12.1-1.3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
experimental1.0-beta14+dfsg-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
squeeze1.0-beta12.1-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
upstream1.0-beta14
Debtags of package critterding:
interface3d, x11
roleprogram
uitoolkitsdl
usesimulating
x11application
Popcon: 4 users (5 upd.)*
Newer upstream!
License: DFSG free
Git

Critterding est un univers de « boîte de Petri » en 3D montrant le fonctionnement de l’évolution de la vie artificielle. Les bestioles débutent avec des cerveaux et des corps complètement aléatoires, mais commencent automatiquement leur évolution vers quelque chose ayant de meilleures aptitudes de survie.

Screenshots of package critterding
Med-bio
paquets de bio-informatique de Debian Med
Versions of package med-bio
ReleaseVersionArchitectures
sid3.3all
squeeze1.8all
wheezy1.13.2all
jessie2.0all
stretch3.0.1all
buster3.3all
bullseye3.3all
Debtags of package med-bio:
fieldbiology
rolemetapackage
suitedebian
Popcon: 5 users (7 upd.)*
Versions and Archs
License: DFSG free
Git

Ce métapaquet installera des paquets Debian utiles en biologie moléculaire, biologie structurale et d’autres sciences biologiques.

Remark of Debian Science team: Maintained by Debian Med Blend

For more information see http://debian-med.alioth.debian.org/tasks/bio

Official Debian packages with lower relevance

Med-bio-dev
paquets de Debian Med pour le développement d’applications bio-informatiques
Versions of package med-bio-dev
ReleaseVersionArchitectures
bullseye3.3all
sid3.3all
buster3.3all
squeeze1.8all
jessie2.0all
wheezy1.13.2all
stretch3.0.1all
Debtags of package med-bio-dev:
fieldbiology
rolemetapackage
suitedebian
Popcon: 0 users (4 upd.)*
Versions and Archs
License: DFSG free
Git

Ce métapaquet installera des paquets Debian utiles pour le développement d’applications de recherche biologiques.

Remark of Debian Science team: Maintained by Debian Med Blend

For more information see http://debian-med.alioth.debian.org/tasks/bio-dev

Packaging has started and developers might try the packaging code in VCS

Genesis
general-purpose neural simulator
Versions of package genesis
ReleaseVersionArchitectures
VCS2.3+dfsg-1all
Versions and Archs
License: free
Debian package not available
Git
Version: 2.3+dfsg-1

GENESIS is a general purpose simulation platform which was developed to support the simulation of neural systems ranging from complex models of single neurons to simulations of large networks made up of more abstract neuronal components.

GENESIS has provided the basis for laboratory courses in neural simulation at both Caltech and the Marine Biological Laboratory in Woods Hole, MA. Most current GENESIS applications involve realistic simulations of biological neural systems. Although the software can also model more abstract networks, other simulators are more suitable for backpropagation and similar connectionist modeling.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 196385