Debian Science Project
Summary
Meteorology
Debian Science Meteorology packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Meteorology and Climate.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

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Debian Science Meteorology packages

Official Debian packages with high relevance

Cdftools
Diagnostic tools for NEMO netCDF output
Maintainer: Alastair McKinstry
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CDFTOOLS is a diagnostic package written in fortran 90 for the analysis of NEMO model output in the frame of the DRAKKAR project. NEMO (Nucleus for European Modelling of the Ocean) is a state-of-the-art modeling framework for oceanographic research, operational oceanography seasonal forecast and climate studies.

Cdo
天候データオペレータ
Maintainer: Alastair McKinstry
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Climate Data Operators は天候モデルデータの操作・分析用のコマンドライン オペレータ集です。サポートされるデータ形式は、GRIB, netCDF,SERVICE, EXTRA, IEG です。400以上のオペレータが利用可能です。

Cmor-tables
MIP tables for the Climate Model Output Rewriter library
Maintainer: Alastair McKinstry
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This package contains tables for use with CMOR that describe the variables and format of data needed.

CMOR software uses these tables to verify that output is valid.

Coda
Common Data Access framework for Earth science
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The Common Data Access framework allows reading of scientific data to manipulate and analyse Climate model Data. Supported data formats are GRIB, netCDF, SERVICE, EXTRA and IEG. There are more than 400 operators available.

Cylc
Workflow scheduler
Maintainer: Alastair McKinstry
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Cylc ("silk") is a suite engine and meta-scheduler that specializes in suites of cycling tasks for weather forecasting, climate modeling, and related processing (it can also be used for one-off workflows of non-cycling tasks, which is a simpler problem).

Dballe
Database for point-based meteorological data (Command line tools)
Maintainer: Enrico Zini
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DB-All.e is a fast on-disk database where meteorological observed and forecast data can be stored, searched, retrieved and updated.

This framework allows one to manage large amounts of data using its simple Application Program Interface, and provides tools to visualise, import and export in the standard formats BUFR, and CREX.

The main characteristics of DB-ALL.e are:

  • Fortran, C, C++ and Python APIs are provided.
  • To make computation easier, data is stored as physical quantities, that is, as measures of a variable in a specific point of space and time, rather than as a sequence of report.
  • Internal representation is similar to BUFR and CREX WMO standard (table code driven) and utility for import and export are included (generic and ECMWF template).
  • Representation is in 7 dimensions: latitude and longitude geographic coordinates, table driven vertical coordinate, reference time, table driven observation and forecast specification, table driven data type.
  • It allows one to store extra information linked to the data, such as confidence intervals for quality control.
  • It allows one to store extra information linked to the stations.
  • Variables can be represented as real, integer and characters, with appropriate precision for the type of measured value.
  • It is based on physical principles, that is, the data it contains are defined in terms of homogeneous and consistent physical data. For example, it is impossible for two incompatible values to exist in the same point in space and time.
  • It can manage fixed stations and moving stations such as airplanes or ships.
  • It can manage both observational and forecast data.
  • It can manage data along all three dimensions in space, such as data from soundings and airplanes.
  • Report information is preserved. It can work based on physical parameters or on report types.
Ecaccess
clients to access ECMWF facilities
Maintainer: Alastair McKinstry
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ecaccess is a suite of client tools to enable access to the computing and data archive facilities of the European Centre for Medium-Range Forecasts (ECMWF).

Strict authentication is performed in a uniform way using SecurID cards and standard (X509) certificates. SSL is used to guarantee the integrity of the application data, the transferred jobs and the monitoring information.

Fcm
Flexible Configuration Manager
Maintainer: Alastair McKinstry
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FCM is a set of tools for managing and building source code. FCM uses Subversion for code management but defines a common process and naming convention to simplify usage. It adds a layer on top of Subversion to provide a more natural and user-friendly interface.

FCM features a powerful build system, mainly aimed at building modern Fortran software applications.

Ferret-vis
Interactive data visualization and analysis environment
Maintainer: Alastair McKinstry
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Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and meteorologists analyzing large and complex gridded data sets. It can transparently access extensive remote Internet data bases using OPeNDAP (formerly known as DODS)

Ferret has a Mathematica-like flexibility, geophysical formatting, "intelligent" connection to its data base, memory management for very large calculations, and symmetrical processing in 4 dimensions. It can work on both gridded and non-gridded datasets.

Flexpart
Particle Dispersion model for tracing air transport phenomena
Maintainer: Alastair McKinstry
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The FLEXPART model is a Lagrangian Particle Dispersion Model developed at the Norwegian Institute for Air Research in the Department of Atmospheric and Climate Research. The model development team consists of Andreas Stohl (who originally wrote FLEXPART), Sabine Eckhardt, Harald Sodemann, and John Burkhart.

Flextra
Trajectory model for tracing air transport phenomena
Maintainer: Alastair McKinstry
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Trajectory models are important tools for studying transport phenomena in the atmosphere. In the environmental sciences, they are often used to establish source-receptor relationships of air pollutants.

FLEXTRA can be used to calculate different types of forward or backward trajectories, and has facilities to estimate the uncertainty of trajectories. It is specifically designed to compute long time sequences of trajectories for many receptor locations.

FLEXTRA may be used with the Metview meteorological workstation to visualize trajectories.

Grads
地球科学データ用のグリッド分析および表示システム
Maintainer: Alastair McKinstry
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Grid Analysis and Display System (GrADS) は、地球科学データに簡単にアクセス し、操作、表示できる対話的なデスクトップツールです。データ形式はバイナリ、 GRIB、NetCDF、HDF-SDS (Scientific Data Sets) のいずれかが使えます。GrADS は、一般に使われているさまざまなオペレーティングシステム上に世界中で実装さ れ、インターネットを介してフリーに配布されています。

GrADS は 4 次元データ環境を用いています: 経度、緯度、高度、時刻。データセッ トは、データ記述子ファイルを使用して 4 次元空間内に配置されます。GrADS は地 点データだけでなくグリッドデータも解釈でき、グリッドは等間隔、非線形空間、 ガウス平面や、可変解像度も可能です。適切な空間と時刻を与えれば、別のデータ セットのデータをグラフィカルに重ね合わせることができます。操作は、コマンド ライン上で FORTRAN に似た式を入力することで対話的に実行されます。豊富な組み 込み関数一式が提供されていますが、独自の関数を任意のプログラミング言語で書 いた外部ルーチンとして追加することもできます。

データは、さまざまなグラフィカルなテクニックを用いて表示されます: 折れ線や 棒グラフ、散布図、平滑等値線、影付き等値線、流線、風ベクトル、グリッドボッ クス、影付きグリッドボックス、および地点モデルのプロット。グラフィックは PostScript や画像形式で出力もできます。GrADS は地球物理学において直感的なデ フォルト設定を提供していますが、オプションでグラフィックス出力のすべての設 定を制御できます。

GrADS には、高度な分析・表示アプリケーションの作成ができるプログラム可能な インターフェース (スクリプト言語) があります。スクリプトを用いると、ボタン とドロップメニュー、さらにはグラフィックを表示して、その後にユーザの選択・ クリックに基づいたアクションを実行できます。GrADS はバッチモードで実行でき るので、スクリプト言語で GrADS を活用すると長いバッチジョブを夜通し実行でき ます。

Gwyddion
Scanning Probe Microscopy visualization and analysis tool
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Gwyddion is a modular program for Scanning Probe Microscopy (SPM) data visualization and analysis. It is primarily intended for analysis of height field data obtained by microscopy techniques like

  • Atomic Force Microscopy (AFM),
  • Magnetic Force Microscopy (MFM),
  • Scanning Tunneling Microscopy (STM),
  • Near-field Scanning Optical Microscopy (SNOM or NSOM) and others. However, it can be used for arbitrary height field and image analysis.

This package contains the main application and its modules. It also contains a GNOME (and Xfce) thumbnailer which creates previews for all file types known to Gwyddion.

Please cite: David Nečas and Petr Klapetek: Gwyddion: an open-source software for SPM data analysis. (eprint) Central European Journal of Physics 10(1):181-188 (2012)
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Harp
Data harmonization toolset for Earth Observation formats
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HARP is a toolset for ingesting, processing and inter-comparing satellite or model data against correlative data. The toolset is composed of a set of command line tools, a C library of analysis functions, and import/export interfaces for Python. The main goal of HARP is to assist in the inter-comparison of data sets. By appropriatelty chaining calls to the HARP command line tools one can preprocess satellite, model, and/or correlative data such that two datasets that need to be compared end up having the same temporal/spatial grid, same data format/structure, and same physical units.

This package provides the HARP binary utilities.

Libdap-bin
Binaries for the libdap Data Access Protocol library
Maintainer: Alastair McKinstry
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OPeNDAP provides software that allows you to access data over the internet, from programs that weren't originally designed for that purpose, as well as some that were. While OPeNDAP is the original developer of the Data Access protocol which its software uses, many other groups have adopted DAP and provide compatible clients, servers and software development kits.

This package contains the 'getdap' client binary.

Libdap-doc
Documentation for the libdap Data Access Protocol library
Maintainer: Alastair McKinstry
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OPeNDAP provides software that allows you to access data over the internet, from programs that weren't originally designed for that purpose, as well as some that were. While OPeNDAP is the original developer of the Data Access protocol which its software uses, many other groups have adopted DAP and provide compatible clients, servers and software development kits.

Libeccodes-tools
GRIB decoding/encoding software (utilities)
Maintainer: Alastair McKinstry
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ecCodes is the ECMWF encoding/decoding software for GRIB and BUFR.

This is a useful set of command line tools to give quick access to grib messages.

ECMWF is the European Centre for Medium-Range Weather Forecasts.

Libemos-bin
ECMWF 補間ライブラリ - バイナリ
Maintainer: Alastair McKinstry
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補間ライブラリ (EMOSLIB) には、補間ソフトウェアと GRIB、BUFR、CREX 符号化 / 復号化ルーチンが含まれています。ECMWF 気象アーカイブ・取得システム (MARS)、 および ECMWF グラフィックパッケージ MetView から使用されます。

本パッケージは bufr-* やその他のツールを提供します。

Magics++
Executables for the magics++ library
Maintainer: Alastair McKinstry
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Magics++ is the latest generation of the ECMWF's Meteorological plotting software MAGICS. Although completely redesigned in C++, it is intended to be as backwards-compatible as possible with the Fortran interface. Besides its programming interfaces (Fortran and C), Magics++ offers MagML, a plot description language based on XML aimed at automatic web production.

This package contains the MagcML binary that may be used with magics++.

Makedepf90
Fortran-90 dependency processor for Makefiles
Maintainer: Alastair McKinstry
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Makedepf90 is a program for automatic creation of Makefile dependency lists for Fortran source code. Makedepf90 supports MODULE:s, INCLUDE:s, cpp #include:s, f90ppr $include:s and coco ??include:s and set-files.

The original idea was to provide the same functionality for Fortran as

   gcc -MM *.c

does for C.

Metview
Interactive data visualization and analysis environment,
Maintainer: Alastair McKinstry
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Metview has been designed as a flexible, modular and extendible system able to accommodate the evolving needs of the user. The system is based on the ECMWF standards for graphics (Magics) and data access (MARS) but can also access locally stored data. The user interface is based on Motif and Qt. Metview is a fully distributed system where modules can run on different workstations and servers.

Metview is a cooperative project between ECMWF and INPE/CPTEC, Brazil. ECMWF has also been assisted by a staff member of Météo-France.

Ncl-ncarg
NCAR Command Language and NCAR graphics
Maintainer: Alastair McKinstry
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The NCAR Command Language (NCL) is a free interpreted language designed specifically for scientific data processing and visualization. NCL has robust file input and output. It can read and write netCDF-3, netCDF-4 classic HDF4, HDF5, binary, and ASCII data, and read HDF-EOS2, GRIB1 and GRIB2. The graphics are world class and highly customizable.

The software comes with a couple of useful command line tools: * ncl_filedump - prints the contents of supported files (netCDF, HDF,

  GRIB1, GRIB2, HDF-EOS2, and CCM History Tape)
* ncl_convert2nc - converts one or more GRIB1, GRIB2, HDF and/or HDF-EOS
  iles to netCDF formatted files.
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Nco
Command-line operators to analyze netCDF files
Maintainer: Debian GIS Project
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NCO is a suite of programs known as operators. The operators are stand-alone, command-line programs executable in a POSIX shell. Operators take one or more netCDF files as input, perform operations (e.g., averaging, hyperslabbing), and produce a netCDF output file. NCO was originally designed to manipulate and analyze climate data, though it works on any netCDF format datasets.

Please cite: Charles S. Zender: Analysis of Self-describing Gridded Geoscience Data with netCDF Operators (NCO). (eprint) Environmental Modelling & Software 23(10):1338-1342 (2008)
Ncview
X11 visual browser for NetCDF format files
Maintainer: Debian GIS Project
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You would use ncview to get a quick and easy, push-button look at your NetCDF files. You can view simple movies of the data, view along various dimensions, take a look at the actual data values, change color maps, invert the data and other simple visual operations.

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Python3-cdo
Python3 module for Climate Data Operators
Maintainer: Alastair McKinstry
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Climate Data Operators are a collection of command line Operators to manipulate and analyse Climate model Data. Supported data formats are GRIB, netCDF, SERVICE, EXTRA and IEG. There are more than 400 operators available. This package provides a Python3 wrapper for CDO.

Python3-cmor
Python3 interface to CMOR
Maintainer: Alastair McKinstry
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This is a Python3 interface to CMOR, the Climate Model Output Rewriter.

Python3-drslib
Library for processing the CMIP5 Data Reference Syntax (Python3)
Maintainer: Alastair McKinstry
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CMIP5 is the Climate Model Intercomparison Project5. This library supports the generation of paths and filenames corresponding to version 0.28 of thei CMIP Data Reference Syntax. It includes tools for converting from previous CMIP3 forms.

Python3-eccodes
Python 3 module Python interface to the ecCodes BUFR and GRIB de/encoder
Maintainer: Alastair McKinstry
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ecCodes is the ECMWF encoding/decoding software for GRIB and BUFR. This is a Python wrapper for the eCCodes library.

ECMWF is the European Centre for Medium-Range Weather Forecasts.

Python3-ferret
Python3 wrapper for the Ferret visualization and analysis environment,
Maintainer: Alastair McKinstry
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Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and meteorologists analyzing large and complex gridded data sets. It can transparently access extensive remote Internet data bases using OPeNDAP (formerly known as DODS)

This is the Python3 wrapper for Ferret

Python3-grib
Python 3 module for reading and writing GRIB files
Maintainer: Alastair McKinstry
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Python 3 module for reading and writing GRIB (editions 1 and 2) files. GRIB is the World Meterological Organization standard for distributing gridded data. The module is a Python 3 interface to the GRIB API C library from the European Centre for Medium-Range Weather Forecasts (ECMWF).

This package also contains the cnvgrib1to2, grib_list, grib_repack, and cnvgrib2to1 scripts.

Python3-gsw
Python 3 implementation of the Thermodynamic Equation of Seawater
Maintainer: Alastair McKinstry
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This package implements the TEOS-10 Equation of State for seawater. TEOS-10 is based on a Gibbs function formulation from which all thermodynamic properties of seawater (density, enthalpy, entropy sound speed, etc.) can be derived in a thermodynamically consistent manner. TEOS-10 was adopted by the Intergovernmental Oceanographic Commission at its 25th Assembly in June 2009 to replace EOS-80 as the official description of seawater and ice properties in marine science.

For further information, see http://www.teos-10.org/

Python3-iapws
Python3 implementation of the international APWS-IF97 steam tables
Maintainer: Alastair McKinstry
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This is a Python3 class to model a state for liquid water or steam with the Industrial Formulation IAPWS-IF97.

Further information on the standard is available at http://www.iapws.org

Python3-metaconfig
Python ConfigParser bootstrapping library (Python3)
Maintainer: Alastair McKinstry
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Metaconfig is a library for centralising Python's ConfigParser files. It is inspired by the logging module where it is increadibly easy to start writing code that depends on logging whilst deferring how log messages will be handled until later.

Python3-netcdf4
Python 3 interface to the netCDF4 (network Common Data Form) library
Maintainer: Debian GIS Project
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NetCDF version 4 has many features not found in earlier versions of the library and is implemented on top of HDF5. This module can read and write files in both the new netCDF 4 and the old netCDF 3 format, and can create files that are readable by HDF5 clients. The API is modelled after Scientific.IO.NetCDF, and should be familiar to users of that module.

Most new features of netCDF 4 are implemented, such as multiple unlimited dimensions, groups and zlib data compression. All the new numeric data types (such as 64 bit and unsigned integer types) are implemented. Compound and variable length (vlen) data types are supported, but the enum and opaque data types are not. Mixtures of compound and vlen data types (compound types containing vlens, and vlens containing compound types) are not supported.

This package contains the netCDF 4 module for Python 3.

Python3-sphere
Python3 interface to the spherepack scientific library.
Maintainer: Alastair McKinstry
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This is a python3 interface to spherepack, a library for geophysical processes.

Sasview
Small Angle Scattering Analysis suite
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SasView is a Small Angle Scattering Analysis Software Package, originally developed as part of the NSF DANSE project under the name SansView, now managed by an international collaboration of facilities.

SasView is software for the analysis of Small-Angle Scattering (SAS) data.

It fits analytic functions describing different types of material microstructure to experimental data in order to determine the shape, size and degree of ordering.

SasView also includes tools for calculating scattering length densities, slit sizes, resolution, fringe thicknesses/d-spacings, the (Porod) invariant ('total scattering'), and distance distribution functions.

This package installs the sasview executable script.

Vistrails
Science visualisation workflow toolkit
Maintainer: Alastair McKinstry
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VisTrails is an open-source scientific workflow and provenance management system developed at the University of Utah that provides support for data exploration and visualization. Whereas workflows have been traditionally used to automate repetitive tasks, for applications that are exploratory in nature, such as simulations, data analysis and visualization, very little is repeated---change is the norm. As an engineer or scientist generates and evaluates hypotheses about data under study, a series of different, albeit related, workflows are created while a workflow is adjusted in an interactive process. VisTrails was designed to manage these rapidly-evolving workflows.

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Xygrib
Weather data visualization, GRIB file viewer
Maintainer: Alastair McKinstry
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This application, written with the Qt toolkit, enables:

  • Visualisation of meteo data from files in GRIB Format 1
  • Automatic GRIB data download
  • Automatic Download from IAC (fleetcode) Data

Official Debian packages with lower relevance

Gerris
流体ソルバ
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Gerris は、流体を表す偏微分方程式を解くためのシステムです。

(現在の) 主要機能の概要は次の通りです:

  • 時間依存の非圧縮性可変密度オイラー、ストークスまたは ナビエ・ストークス方程式を解きます
  • 適合細分化格子 (AMR) 法: 分解能は流体の特徴に動的に適応します
  • 複雑な形状の完全自動格子生成
  • 空間と時間で二次オーダー
  • 個数無制限の移流・拡散パッシブトレーサ
  • 追加のソース項を柔軟に指定できます
  • MPI ライブラリを使用した移植性の高い並列サポート
  • 界面流体の Volume of Fluid (VOF) 法による移流スキーム

本パッケージには MPI サポートが組み込まれています。

Gnudatalanguage
Free IDL compatible incremental compiler
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GNU Data Language (GDL) is a free IDL (Interactive Data Language) compatible incremental compiler. It has full syntax compatibility with IDL 7.1. IDL is a registered trademark of ITT Visual Information Solutions. From IDL 8.0, the following language elements are supported:

  • FOREACH loop
  • negative array indices
  • garbage collection pointers and objects
  • call methods on an object using "." (e. g. object.aMemberProcedure,arg1)

The file input output system is fully implemented. GUI support (widgets) is officially provided, but it's not complete yet.

This package contains the main commandline and interpreter frontend.

Please cite: A. Coulais, M. Schellens, J. Gales, S. Arabas, M. Boquien, P. Chanial, P. Messmer, D. Fillmore, O. Poplawski, S. Maret, G. Marchal, N. Galmiche and T. Mermet: Status of GDL - GNU Data Language. (eprint) Astronomical Data Analysis Software and Systems XIX 434:187 (2010)
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Octave-octcdf
NetCDF data files interface for Octave
Maintainer: Debian Octave Group
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This package provides functions to work with NetCDF data files in Octave, a numerical computation software. This package provides a function (netcdf) that creates and reads NetCDF files and writes to a NetCDF file (ncdump) among others.

This Octave add-on package is part of the Octave-Forge project.

Paraview
並行可視化アプリケーション
Maintainer: Debian Science Team
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roleprogram
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useviewing
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ParaView は、小規模なものから非常に大規模なものまで様々なサイズの データセットを可視化するためのオープンソースかつ マルチプラットフォームなアプリケーションです。 ParaView プロジェクトの目標は以下に挙げたものを含みます。

* オープンソースでマルチプラットフォームな
  可視化アプリケーションを開発すること。
* 巨大なデータセットを処理するための分散計算モデルを
  サポートすること。
* オープンで柔軟、かつ直感的な
  ユーザーインターフェースを作成すること。
* オープンな標準に基づいた、拡張可能なアーキテクチャを開発すること。

ParaView は並列および単一プロセッサのシステムの 分散・共有されたメモリ上で実行できます。 また、Windows や Mac OS X、Linux や様々な Unix の ワークステーションやクラスタ、スーパーコンピュータで うまくテストされています。 内部的には、ParaView はデータ処理のためとレンダリングエンジンとして Visualization Toolkit を使っています。 また、Qt を使って書かれたユーザーインターフェースです。

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VersionURL
3.14.1-1ubuntu1https://screenshots.debian.net/screenshots/000/009/476/large.png
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Python3-openturns
Python3 front-end of OpenTURNS (aka TUI)
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OpenTURNS is a powerful and generic tool to treat and quantify uncertainties in numerical simulations in design, optimization and control. It allows both sensitivity and reliability analysis studies:

  • defining the outputs of interest and decision criterion;
  • quantify and model the source of uncertainties;
  • propagate uncertainties and/or analyse sensitivity and
  • rank the sources of uncertainty

Targeted users are all engineers who want to introduce the probabilistic dimension in their so far deterministic studies.

This package provides the Python3 bindings to the library.

R-base
GNU R 統計計算・グラフィックスシステム
Maintainer: Dirk Eddelbuettel
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fieldstatistics
roledummy, metapackage
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R は、統計計算とグラフィクスのためのシステムです。R は言語、グラフィックを サポートするランタイム環境、デバッガから構成され、一部のシステム関数に アクセスでき、スクリプトファイルに保存したプログラムを実行することができます。

R の設計は、Becker, Chambers & Wilks の S と、Sussman の Scheme に非常に 強く影響を受けています。外見的には S によく似ており、一方で基礎部分の実装と セマンティクスは Scheme に由来しています。

R の中核はインタープリタ式コンピュータ言語で、分岐、ループが可能で、関数を 使ったモジュール型プログラミングもできます。R のユーザから見える 関数のほとんどは、R で書かれています。R のコアの多くの関数と同様に、 効率を良くするために C, C++ または FORTRAN で書かれた手続きに 接続することができます。R のディストリビューションには、膨大な統計の手続きと、 その基礎となる応用数学の計算アルゴリズムが含まれています。さらに、多種にわたる データを表現するため、柔軟性のあるグラフィック環境を提供する多くの関数群が 存在します。

また、数千もの拡張「パッケージ」が CRAN (Comprehensive R Archive Network) から入手可能で、その多くが 'r-cran-' という名前の Debian パッケージにもなっています。

このパッケージは、バージョン 1.5.0 より前の、サイズの大きな r-base パッケージからの移行を容易にするメタパッケージです。一度インストールした後は、 このパッケージは安全に削除できます。apt-get は今後のアップグレード時に、 このコンポーネントを自動的にアップグレードします。必要であれば、 r-base-core パッケージだけをインストールするといったことができます。

The package is enhanced by the following packages: texmacs
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Geonetwork - wnpp
Catalog application to manage spatially referenced resources through the web
Responsible: Alastair McKinstry
License: GPL
Debian package not available

Network opensource is a standards based, Free and Open Source catalog application to manage spatially referenced resources through the web. It provides powerful metadata editing and search functions as well as an embedded interactive web map viewer. This website contains information related to the use of the software.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 193693