Debian Science Project
Summary
The Debian Science Pure Blend contains 1617 packages which are grouped by metapackages. Each metapackage will cause the installation of packages for a specific topic. The following table lists the metapackages of Debian Science

Tasks page

This is a list of the Tasks Debian Science is made of:

Table of contents

Brain-computer interface - Debian Science Brain-computer interface packages

Debian Science packages for the design and use of brain-computer interface (BCI) -- direct communication pathway between a brain and an external device. BCIs are often aimed at assisting, augmenting or repairing human cognitive or sensory-motor functions.

The selection of packages is targeting the complete frameworks for the design of BCI systems. Often such systems rely on external presentation, data collection and analysis software which could be found in science-neuroscience-cognitive, science-dataacquisition, data-machine-learning metapackages.

Packaging has started and developers might try the packaging code in VCS

Emokit
Emotiv EPOC headset Python interface
Pybci
Brain Computer Interface module for Brain Vision Recorder
Pyff
Brain Computer Interface (BCI) framework

No known packages available but some record of interest (WNPP bug)

Openvibe
platform for the design, test and use of BCI

No known packages available

Bci2000
platform for brain-computer interface systems
Bcpy2000
platform for brain-computer interface systems

Biology - Debian Science Biology packages

This metapackage will install Debian Science packages related to Biology. You might also be interested in the field::biology debtag.

This metapackage makes use of the packages med-bio and med-bio-dev (for development of biological applications) which are maintained by Debian Med - another Debian Pure Blend. If you are a biologist you are most probably interested in the Debian Med project which deals with biology and medicine in much more detail then the more general Debian Science.

Official Debian packages with high relevance

Avida-base
Auto-adaptive genetic system for Artificial Life research
Bauble
biodiversity collection manager software application
Critterding
Evolving Artificial Life
Med-bio
Debian Med bioinformatics packages

Official Debian packages with lower relevance

Med-bio-dev
Debian Med packages for development of bioinformatics applications

Packaging has started and developers might try the packaging code in VCS

Genesis
general-purpose neural simulator

Chemistry - Debian Science Chemistry packages

This metapackage will install Debian Science packages related to Chemistry. You might also be interested in the field::chemistry debtag and, depending on your focus, in the education-chemistry metapackage.

Official Debian packages with high relevance

Adun.app
Molecular Simulator for GNUstep (GUI)
Apbs
Adaptive Poisson Boltzmann Solver
Avogadro
Molecular Graphics and Modelling System
Bkchem
Chemical structures editor
Bodr
Blue Obelisk Data Repository
Chemeq
Parser for chemical formula and equilibria
Chemical-mime-data
chemical MIME and file type support for desktops
Chemical-structures
set of molecular structures in open formats
Chemtool
chemical structures drawing program
Cp2k
Ab Initio Molecular Dynamics
Drawxtl
crystal structure viewer
Easychem
Draw high-quality molecules and 2D chemical formulas
Gabedit
graphical user interface to Ab Initio packages
Galculator
scientific calculator
Gamgi
General Atomistic Modelling Graphic Interface (GAMGI)
Garlic
visualization program for biomolecules
Gausssum
parse and display Gaussian, GAMESS, and etc's output
Gchempaint
2D chemical structures editor for the GNOME2 desktop
Gcrystal
lightweight crystal structures visualizer
Gcu-bin
GNOME chemistry utils (helper applications)
Gcu-plugin
GNOME chemistry utils (browser plugin)
Gdis
molecular and crystal model viewer
Gdpc
visualiser of molecular dynamic simulations
Gelemental
Periodic Table viewer
Ghemical
GNOME molecular modelling environment
Gperiodic
periodic table application
Gromacs
Molecular dynamics simulator, with building and analysis tools
Gromacs-mpich
Molecular dynamics sim, binaries for MPICH parallelization
Gromacs-openmpi
Molecular dynamics sim, binaries for OpenMPI parallelization
Jmol
Molecular Viewer
Kalzium
periodic table and chemistry tools
Katomic
atomix puzzle game
Libcdk-java
Chemistry Development Kit (CDK) Java libraries
Mmass
Mass spectrometry tool for proteomics
Mmass-modules
Mass spectrometry tool for proteomics - extension modules
Mopac7-bin
Semi-empirical Quantum Chemistry Library (binaries)
Mpqc
Massively Parallel Quantum Chemistry Program
Mpqc-support
Massively Parallel Quantum Chemistry Program (support tools)
Msxpertsuite
mass spectrometry software suite - metapackage
Openbabel
Chemical toolbox utilities (cli)
Openfoam
Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
Pdb2pqr
Preparation of protein structures for electrostatics calculations
Psi3
Quantum Chemical Program Suite
Pyfai
Fast Azimuthal Integration scripts
Pymol
Molecular Graphics System
Python3-pymzml
mzML mass spectrometric data parsing (Python 3.x)
Qutemol
interactive visualization of macromolecules
Rasmol
visualization of biological macromolecules
Tandem-mass
mass spectrometry software for protein identification
V-sim
Visualize atomic structures
Viewmol
graphical front end for computational chemistry programs
Xbs
3-d models and movies of molecules
Xdrawchem
Chemical structures and reactions editor
Xmakemol
program for visualizing atomic and molecular systems
Xmakemol-gl
program for visualizing atomic and molecular systems (OpenGL)

Official Debian packages with lower relevance

Gdpc-examples
example files for the gdpc program
Libschroedinger-coordgenlibs-dev
2D coordinate generation for chemical compounds - header files
Python-pymzml-doc
mzML mass spectrometric data parsing - documentation
Python3-periodictable
Extensible periodic table of the elements (Python 3)

Packaging has started and developers might try the packaging code in VCS

Fdmnes
calculates spectra of different spectroscopies
Molden
processing program of molecular and electronic structure
Molekel
Advanced Interactive 3D-Graphics for Molecular Sciences
Tinker
Software Tools for Molecular Design

No known packages available but some record of interest (WNPP bug)

Libegad
rational protein design library
Libint
Evaluate the integrals in modern atomic and molecular theory

No known packages available

Openchrom
process chromatographic and mass spectrometric data

Data acquisition - Debian Science data acquisition packages

This metapackage will install Debian Science packages related to data acquisition. This might be used in several sciences (as for instance science-viewing and science-typesetting).

Official Debian packages with high relevance

Clickhouse-tools
column-oriented database system (tools)
Csvkit
command-line tools for working with CSV
Engauge-digitizer
interactively extracts numbers from bitmap graphs or maps
Filo
FILe and stream Operations
G3data
extract data from scanned graphs
Ghkl
diffractometer computation control application
Jaaa
audio signal generator and spectrum analyser
Ktimetrace
Graphical tool to measure and graph data
Libfreenect-dev
library for accessing Kinect device -- development files
Libgetdata-tools
library to read/write dirfile data - extra tools
Lxi-tools
LAN eXtensions for Instrumentation (LXI) software interface
Narval-utils
An Ada framework for Distributed Acquisition Systems (utils)
Netcdf-bin
Programs for reading and writing NetCDF files
Python3-pyvisa
Python 3 bindings for Virtual Instrument Software Architecture
Qtdmm
GUI for digital multimeter
Segyio-bin
SEG-Y read/write library for seismic processing (shell utilities)
Xlsx2csv
convert xslx files to csv format
Xyscan
data thief for scientists

Official Debian packages with lower relevance

Binoculars
Surface X-ray diffraction 2D detector data reduction
Comedi-source
Comedi kernel module source
Gnudatalanguage
Free IDL compatible incremental compiler
Gpsd
Global Positioning System - daemon
Python3-pytango
transitional dummy package for python3-tango
Python3-taurus
Framework for scientific/industrial CLIs and GUIs - Python3
Rt-tests
Test programs for rt kernels
Rtai
Real Time Application Interface
Tango-accesscontrol
TANGO distributed control system - accesscontrol server
Tango-db
TANGO distributed control system - database server
Tango-starter
TANGO distributed control system - starter server
Xenomai-runtime
Xenomai runtime utilities

Unofficial packages built by somebody else

Epics
Experimental Physics and Industrial Control System
Linux-image-2.6-rt
Stock Linux kernel with RT-Preempt patch
Mx-dataacquisition
data acquisition and control system

No known packages available but some record of interest (WNPP bug)

Opendap
Java Network Data Access Protocol

No known packages available

Hart
toolbox to generate DAQ Scicos-blocks for hardware
Plot-digitizer
digitize scanned plots of functional data

Data acquisition development - Debian Science data acquisition development packages

This metapackage will install Debian Science packages which are helpful to develop applications related to data acquisition. This might be used in several sciences.

Official Debian packages with high relevance

Libgetdata-dev
library to read/write dirfile data - devel files (C, C++, F77, F95)
Libgetdata-perl
library to read/write dirfile data - perl bindings
Liblog4tango-dev
logging for TANGO - development library
Liblxi-dev
LAN eXtensions for Instrumentation (LXI) software interface
Libnarval1-dev
An Ada framework for Distributed Acquisition Systems (development)
Libsdsl-dev
succinct data structure library - development files
Libtango-dev
TANGO distributed control system - development library
Python3-aws-xray-sdk
AWS X-Ray SDK for Python 3
Python3-csvkit
public modules for csvkit (Python 3)
Python3-guidata
dataset manipulation GUI generator - Python 3
Python3-pygetdata
library to read/write dirfile data - Python3 bindings
Python3-pymeasure
scientific measurement library for Python
Python3-segyio
SEG-Y read/write library for seismic processing (python3 bindings)

Official Debian packages with lower relevance

R-cran-mi
GNU R package for Missing Data Imputation and Model Checking -- mi
R-cran-ncdf4
GNU R interface to Unidata netCDF format data files

No known packages available but some record of interest (WNPP bug)

Python3-xrayutilities
Python package for xray data reduction and analysis

Devices - Debian Science specific devices support

This task lists Debian Science packages which are dedicated to specific devices that are typically used in sciences. This might reach from scientific calculators or specific measurement devices.

Note that there is no according metapackage created since the packages might be to different to make sense to install all on one machine.

Official Debian packages with high relevance

Bossa
Atmel SAM ARM microcontroller flash programming GUI
Bossa-cli
Atmel SAM ARM microcontroller flash programming utility
Expeyes
hardware & software framework for developing science experiments
Gfm
Texas Instruments hand-helds file manipulation program for X
Tiemu
Texas Instruments calculators emulator (without GDB)
Tilem
GTK+ TI Z80 calculator emulator
Tilp2
Texas Instruments hand-helds <-> PC communication program for X

Official Debian packages with lower relevance

Libticables-dev
Texas Instruments link cables library [development files]
Libticalcs-dev
Texas Instruments calculator communication library [development files]
Libticonv-dev
Texas Instruments calculators charsets library [development files]
Libtifiles-dev
Texas Instruments calculator files library [development files]

Distributed computing - Debian Science Distributed Computing packages

This metapackage will install Debian Science packages useful for various types of distributed computing, such as grid-, cloud-, cluster- and parallel-computing.

Official Debian packages with high relevance

Dmtcp
Checkpoint/Restart functionality for Linux processes
Environment-modules
Modular system for handling environment variables
Globus-core
Globus Toolkit - Globus Core - Transitional Package
Gridengine-client
Utilities for Grid Engine queue management
Gridengine-exec
Distributed resource management - Execution Server
Gridengine-master
Distributed resource management - Master Server
Gridengine-qmon
Graphical utilities for Grid Engine queue management
Htcondor
distributed workload management system
Ipython3
Enhanced interactive Python 3 shell
Mpich
Implementation of the MPI Message Passing Interface standard
Mpich2python
MPI-enhanced Python interpreter (MPICH2 based version)
Nordugrid-arc-nox
ARC grid middleware
Openmpi-bin
high performance message passing library -- binaries
Openmpipython
MPI-enhanced Python interpreter (OpenMPI based version)
Python3-scoop
Python3 library for concurrent parallel programming

Official Debian packages with lower relevance

Coop-computing-tools
cooperative computing tools
Hpcc
HPC Challenge benchmark
Octave-mpi
Octave toolbox for parallel computing using MPI
Python3-mpi4py
bindings of the Message Passing Interface (MPI) standard

No known packages available

Psom
pipeline system for Octave and Matlab

Economics - Debian Science Economics packages

This metapackage will install Debian Science packages useful for economics and econometrics. It includes user-friendly programs for simulating and estimating macro-economic and micro-economic models. It also provides computing environments which can solve a wide range of problems typically encountered in economic research. These environments provide functionalities similar to those of popular non-free systems (such as MATLAB, Mathematica, Stata or SAS).

Official Debian packages with high relevance

Dynare
platform for handling a wide class of economic models
Gretl
GNU Regression, Econometric & Time-Series Library
Octave-econometrics
econometrics functions for Octave
Python3-statsmodels
Python3 module for the estimation of statistical models
R-base
GNU R statistical computation and graphics system
R-cran-aer
Applied Econometrics with R
R-cran-bayesm
GNU R package for Bayesian inference
R-cran-dynlm
GNU R package for dynamic linear models and time series regression
R-cran-fimport
GNU R package for financial engineering -- fImport
R-cran-fnonlinear
GNU R package for financial engineering -- fNonlinear
R-cran-foreign
GNU R package to read/write data from other stat. systems
R-cran-funitroots
GNU R package for financial engineering -- fUnitRoots
R-cran-gmm
GNU R generalized method of moments and generalized empirical likelihood
R-cran-hmisc
GNU R miscellaneous functions by Frank Harrell
R-cran-isocodes
GNU R package providing tables for several ISO codes
R-cran-lme4
GNU R package for linear mixed effects model fitting
R-cran-mcmcpack
R routines for Markov chain Monte Carlo model estimation
R-cran-mfilter
GNU R package providing miscellaneous time series filters
R-cran-plm
GNU R estimators and tests for panel data econometrics
R-cran-pwt
GNU R package for the Penn World Tables (version 5.6 to 7.1)
R-cran-pwt8
GNU R package for the Penn World Tables (version 8.x)
R-cran-pwt9
GNU R package for the Penn World Tables (version 9.x)
R-cran-rdbnomics
access to hundreds of millions data series from DBnomics API
R-cran-rsdmx
GNU R package for the Statistical Data and Metadata Exchange (SDMX) framework
R-cran-tseries
GNU R package for time-series analysis and comp. finance
R-cran-urca
GNU R package providing unit root and cointegration tests
R-cran-wdi
GNU R package for accessing the World Development Indicators

Official Debian packages with lower relevance

Elpa-ess
Emacs mode for statistical programming and data analysis
Science-financial
Debian Science financial engineering and computational finance
Science-mathematics
Debian Science Mathematics packages
Science-numericalcomputation
Debian Science Numerical Computation packages
Science-social
Debian Science social sciences packages
Science-statistics
Debian Science Statistics packages

Debian packages in contrib or non-free

Dynare-matlab
MATLAB support for Dynare
X13as
seasonal adjustment software for modeling time series

No known packages available

Dolo
Economic modelling in Python
Minsky
system dynamics program with additional features for economics
Netlogo
multi-agent programmable modeling environment
Pksfc
R package to simulate Post-Keynesian Stock-Flow Consistent Models
Python3-pandasdmx
python- and pandas-powered client for statistical data and metadata exchange
Python3-quantecon
high performance, open source Python code library for economics
R-cran-ecdat
R data sets for econometrics
R-cran-pdfetch
Fetch Economic and Financial Time Series Data from Public Sources
R-cran-vars
VAR, SVAR and SVEC Models in R
R-other-bmr
bayesian Macroeconometrics in R
R-other-gecon
solver for large scale dynamic general equilibrium models
Recs
MATLAB solver for DSGE models
Repast-hpc
agent-based modeling for large-scale distributed computing platforms
Repast-symphony
platform for extremely flexible models of interacting agents

Electrophysiology - Debian Science packages for Electrophysiology

This metapackage will install Debian packages which might be useful for scientists doing electrophysiology-based neuroscience research.

The selection of packages is targeting the application of analysis techniques. Methods developers are referred to the science-statistics, science-imageanalysis, science-numericalcomputation, med-imaging, and med-imaging-dev metapackages for a variety of additional software that might be useful for electrophysiology research.

Official Debian packages with high relevance

Libdrawtk-dev
Library to simple and efficient 2D drawings (development files)
Libgdf-dev
IO library for the GDF -- development library
Sigviewer
GUI viewer for biosignals such as EEG, EMG, and ECG

Official Debian packages with lower relevance

Aghermann
Sleep-research experiment manager
Klustakwik
automatic sorting of the samples (spikes) into clusters
Libbiosig-dev
I/O library for biomedical data - development files
Libeegdev-dev
Biosignal acquisition device library (Development files)
Librtfilter-dev
realtime digital filtering library (development files)
Libxdffileio-dev
Library to read/write EEG data file formats (development files)
Python3-neo
Python IO library for electrophysiological data formats
Science-dataacquisition
Debian Science data acquisition packages
Science-neuroscience-modeling
Debian Science packages for modeling of neural systems
Stimfit
Program for viewing and analyzing electrophysiological data

Packaging has started and developers might try the packaging code in VCS

Eegview
Software to display EEG data in realtime
Libmcpanel-dev
Library to display multichannel data in realtime (Developement files)
Neo
IO library for electrophysiological data formats in Python
Openelectrophy
data analysis GUI for intra- and extra-cellular recordings

Unofficial packages built by somebody else

Eeglab
toolbox for processing and visualization of electrophysiological data

No known packages available but some record of interest (WNPP bug)

Bluespike
Data Acquisition and Neural Spike Processing Software
Meabench
tools for recording from MEAs and RT processing
Relacs
framework for closed-loop neurophysiological experiments
Spykeview
GUI application for navigating, analyzing and visualizing electrophysiological datasets

No known packages available

Chronus
platform for analysis of neural signals
Mclust
Matlab toolbox for clustering of electrophysiologic recordings
Neurodata
suite to analyze data acquired from electrophysiology experiments
Nspike
electrophysiological and behavioral data collection
Patchclamp
recorder of single-channel and whole-cell currents
Pymeg
suite for analysis of magnetoencephalography (MEG) data
Qrtailab
Qt-GUI for RTAI
Rtxi
real-time data acquisition and control applications in biological research
Spike
spike train analysis toolbox
Trellis-neuro
interface to neurophysiology data acquisition and stimulation instruments

Engineering - Debian Science Engineering packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Engineering.

Please note that there is an additional package engineering-dev which depends from packages which are useful to develop engineering related software.

Official Debian packages with high relevance

Calculix-ccx
Three-Dimensional Structural Finite Element Program
Calculix-cgx
Calculix cgx is a 3-dimensional pre- and post-processor for fem
Cba
Continuous Beam Analysis
Cgns-convert
CFD General Notation System - Conversion tools
Code-aster
Code_Aster finite element program - metapackage
Code-aster-gui
Graphical user interface for Code_Aster - client
Code-saturne
General purpose Computational Fluid Dynamics (CFD) software
Diet-agent
DIET grid middleware - agent
Dime
DXF Import, Manipulation, and Export programs
Ecs
Code_Saturne Preprocessor
Eficas
Graphical editor for Code Aster command files
Feel++-apps
A library for the finite element method
Fenics
Automated Solution of Differential Equations
Freecad
Extensible Open Source CAx program
Gerris
Fluid Flow Solver
Getdp
general environment for the treatment of discrete problems
Gmsh
Three-dimensional finite element mesh generator
Hdfview
Java HDF Object viewer
Libadios-bin
ADIOS Adaptable IO system for simulations - binaries
Librecad
Computer-aided design (CAD) system
Libsilo-bin
Utilities to manipulate libsilo files
Lxi-tools
LAN eXtensions for Instrumentation (LXI) software interface
Netgen
Automatic 3d tetrahedral mesh generator
Oce-draw
OpenCASCADE Community Edition CAE platform shared library
Openfoam
Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
Python3-admesh
Python bindings for the ADMesh (Python 3)
Python3-dolfin
Python interface for DOLFIN (Python 3)
Python3-escript
Escript/Finley finite elements Python3 system (with OpenMP)
Python3-escript-mpi
Escript/Finley finite elements Python3 system (OpenMP + MPI)
Python3-fiat
tabulation of finite element function spaces (Python 3)
Python3-openturns
Python3 front-end of OpenTURNS (aka TUI)
Python3-silo
Python3 interface to the SILO Scientific I/O library
Sailcut
Sail design and plotting software
Scram
Probabilistic Risk Analysis Tool
Sfc
SyFi Form Compiler
Solvespace
Parametric 2d/3d CAD
Syrthes
Transient thermal simulations in complex solid geometries
Tetgen
Quality Tetrahedral Mesh Generator
Z88
Finite Element Analysis Program - runtime

Official Debian packages with lower relevance

Ann-tools
Approximate Nearest Neighbor Searching library (tools)
Calculix-ccx-doc
Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-ccx-test
Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-cgx-examples
Example files for Calculix GraphiX
Logcentral
Logging service for distributed applications
Logcentral-tools
Logging service for distributed applications
R-cran-spc
GNU R Statistical Process Control

Debian packages in contrib or non-free

Metis-edf
Family of Multilevel Partitioning Algorithms

Packaging has started and developers might try the packaging code in VCS

Brlcad
powerful combinatorial Constructive Solid Geometry (CSG)
Openmeca
Multibody mechanical simulator
Salome-gui
Numerical simulation pre- and post-processor
Salome-jobmanager
job manager for the Salomé platform
Salome-kernel
Numerical simulation pre- and post-processor
Salome-med
Numerical simulation pre- and post-processor
Salome-paravis
paraview-based visualization module for Salome
Salome-smesh
Numerical simulation pre- and post-processor - smesh module
Salome-yacs
Numerical simulation pre- and post-processor - yacs module

Unofficial packages built by somebody else

Tochnog
A free implicit/explicit finite element analysis program
Varkon
A CAD-system with parametric modelling

No known packages available but some record of interest (WNPP bug)

Avl
Analyser for the aerodynamic and flight-dynamic of rigid aircraft.

No known packages available

Pycgns
Package is a Python binding to the CGNS library

Engineering-dev - Debian Science Engineering-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Engineering.

You might also be interested in the science-engineering metapackage.

Official Debian packages with high relevance

Code-saturne-bin
General purpose Computational Fluid Dynamics (CFD) software - binaries
Code-saturne-include
General purpose Computational Fluid Dynamics (CFD) software - includes
Libadios-dev
ADIOS Adaptable IO system for simulations
Libalberta-dev
adaptive finite element library (development files)
Libann-dev
Approximate Nearest Neighbor Searching library (development files)
Libbox-dev
Boxlib: C++ Block-structured finite difference algorithms library
Libceres-dev
nonlinear least squares minimizer (development files)
Libcgns-dev
CFD General Notation System library
Libcoin-dev
high-level 3D graphics devkit with Open Inventor and VRML97 support
Libdeal.ii-dev
Differential Equations Analysis Library - development files
Libdime-dev
DXF Import, Manipulation, and Export library - devel
Libdxflib-dev
Development files for the dxflib library
Libelmer-dev
finite element multiphysics suite - development files
Libfeel++-dev
A library for the finite element method
Libflann-dev
Fast Library for Approximate Nearest Neighbors - development
Libgetfem++-dev
Development files for the GETFEM++ generic finite element library
Libhdf5-serial-dev
transitional dummy package
Libitpp-dev
C++ library of signal processing and communication routines: Headers
Libjhdf4-java
Java HDF4 Object Package
Libjhdf5-java
Java HDF5 Object Package
Libluminate-dev
Illuminator Distributed Visualization Library: development files
Liblxi-dev
LAN eXtensions for Instrumentation (LXI) software interface
Libmadlib-dev
mesh adaptation library
Libmed-dev
Development files for libmed
Libmedc-dev
Development files for libmedc
Libmedimport-dev
Development files for libmedimport0
Libnetcdf-dev
creation, access, and sharing of scientific data
Libnfft3-dev
development files for the NFFT library
Libnlopt-dev
nonlinear optimization library -- development package
Liboce-ocaf-dev
OpenCASCADE Community Edition CAE platform library development files
Liboce-visualization-dev
OpenCASCADE Community Edition CAE platform library development files
Libopenturns-dev
headers and development libraries for OpenTURNS
Libp4est-dev
Algorithms for Parallel Adaptive Mesh Refinement - development files
Libplb-dev
CFD solver based on the lattice Boltzmann method. Development files
Libsilo-dev
Development files for SILO Scientific I/O library from LLNL
Libsis-jhdf5-java
easy-to-use HDF library for Java
Libslepc3.4.2-dev
Scalable Library for Eigenvalue Problem Computations
Libslicot-dev
numerical algorithms from systems and control theory (static library)
Libug-dev
software framework for finite element methods (development files)
Libxdmf-dev
eXtensible Data Model and Format development tools
Python3-collada
Python 3 module for creating, editing and loading COLLADA
Python3-fluids
Python 3 fluid dynamics and engineering design library
Python3-netcdf4
Python 3 interface to the netCDF4 (network Common Data Form) library
Python3-pygalmesh
Python 3 frontend to CGAL's 3D mesh generators
Python3-pynfft
Python bindings for the NFFT3 library - Python 3
R-cran-rnetcdf
GNU R package that provides an R interface to NetCDF datasets
Trilinos-all-dev
object-oriented framework for large-scale problems - development files (ALL)

Official Debian packages with lower relevance

Ceres-solver-doc
documentation for ceres-solver
Libdiet-admin2.8-dev
DIET grid middleware - admin development files
Libdiet-client2.8-dev
DIET grid middleware - client development files
Libdiet-dagda2.8-dev
DIET grid middleware - dagda development files
Libdiet-sed2.8-dev
DIET grid middleware - sed development files
Libgtkdatabox-dev
Gtk+ library to display large amounts of numerical data (development)
Libgtkdataboxmm-dev
C++ bindings for GtkDatabox - development files
Libqwt-dev
Qt widgets library for technical applications (development, qt4)
Libqwt5-qt4-dev
Qt4 widgets library for technical applications (development)
Openturns-examples
examples of OpenTURNS functionalities

Debian packages in contrib or non-free

Libmetis-edf-dev
Family of Multilevel Partitioning Algorithms
Libtet1.4-dev
Quality Tetrahedral Mesh Generator

Packaging has started and developers might try the packaging code in VCS

Libgismo-dev
Geometry plus simulatiom modules development files
Salome-kernel-dev
Numerical simulation pre- and post-processor development files

No known packages available

Pycgns
Package is a Python binding to the CGNS library

Financial engineering - Debian Science financial engineering and computational finance

This metapackage will install Debian Science packages for financial engineering and computational finance.

Official Debian packages with high relevance

R-cran-fasianoptions
GNU R package for financial engineering -- fAsianOptions
R-cran-fassets
GNU R package for financial engineering -- fAssets
R-cran-fbasics
GNU R package for financial engineering -- fBasics
R-cran-fbonds
GNU R package for financial engineering -- fBonds
R-cran-fcopulae
GNU R package for financial engineering -- fCopulae
R-cran-fexoticoptions
GNU R package for financial engineering -- fExoticOptions
R-cran-fextremes
GNU R package for financial engineering -- fExtremes
R-cran-fgarch
GNU R package for financial engineering -- fGarch
R-cran-fimport
GNU R package for financial engineering -- fImport
R-cran-fmultivar
GNU R package for financial engineering -- fMultivar
R-cran-fnonlinear
GNU R package for financial engineering -- fNonlinear
R-cran-foptions
GNU R package for financial engineering -- fOptions
R-cran-fportfolio
GNU R package for financial engineering -- fPortfolio
R-cran-fregression
GNU R package for financial engineering -- fRegression
R-cran-ftrading
GNU R package for financial engineering -- fTrading
R-cran-funitroots
GNU R package for financial engineering -- fUnitRoots
R-cran-timedate
GNU R package for financial engineering -- timeDate
R-cran-timeseries
GNU R package for financial engineering -- timeSeries

Geography - Debian Science Geography packages

This metapackage will install Debian Science packages related to Geography. You might also be interested in the field::geography debtag and, depending on your focus, in the education-geography metapackage.

Official Debian packages with high relevance

Avce00
Conversion of ESRI Arcinfo Vector Coverage in E00 format
Drawmap
draws customized maps, using raw USGS data files
E00compr
Program to read/write Arcinfo compressed E00 files
Earth3d
Map client displaying a 3D model of the world
Gdal-bin
Geospatial Data Abstraction Library - Utility programs
Geoip-bin
IP lookup command line tools that use the GeoIP library
Gis-workstation
Geographic Information Systems (GIS) workstation
Gmt
Generic Mapping Tools
Gosmore
Openstreetmap.org viewer / wayfinder / search client
Gpsbabel
GPS file conversion plus transfer to/from GPS units
Gpsd
Global Positioning System - daemon
Gpsd-clients
Global Positioning System - clients
Gpsdrive
Car navigation system
Gpsman
GPS data graphical manager
Gpsmanshp
Tcl interface to shapelib
Gpstrans
communicate with a Garmin Global Positioning System receiver
Gpx2shp
convert GPS or GPX file to ESRI Shape file
Grace
XY graphing and plotting tool
Grass
Geographic Resources Analysis Support System (GRASS GIS)
Grass-doc
GRASS GIS user documentation
Hyantesite
geomatic tool to compute neighbourhood population potential
Hydroffice.bag-tools
command-line tools for hydroffice.bag
Josm
Editor for OpenStreetMap
Mapnik-utils
C++ toolkit for developing GIS applications (utilities)
Mapserver-bin
MapServer utilities
Ogdi-bin
Open Geographic Datastore Interface Library -- utilities
Openscenegraph
3D scene graph, utilities and examples (binaries)
Osm2pgsql
OpenStreetMap data to PostgreSQL converter
Osmpbf-bin
OpenStreetMap PBF file format library - tools
Pgadmin3
graphical administration tool for PostgreSQL
Phppgadmin
web-based administration tool for PostgreSQL
Postgis
Geographic objects support for PostgreSQL
Proj-bin
Cartographic projection library (tools)
Python3-cartopy
Cartographic library for Python 3
Python3-mapnik
Python 3 interface to the mapnik library
Python3-mapscript
Python library for MapServer
Qgis
Geographic Information System (GIS)
Qgis-plugin-grass
GRASS plugin for QGIS
R-cran-fields
GNU R tools for spatial data
R-cran-mapdata
GNU R support for producing geographic maps (supplemental data)
R-cran-mapproj
GNU R support for cartographic projections of map data
R-cran-maps
GNU R support for producing geographic maps
R-cran-maptools
GNU R Tools for reading and handling spatial objects
R-cran-raster
GNU R geographic data analysis and modeling
R-cran-sp
GNU R classes and methods for spatial data
Sac2mseed
Convert SAC waveform data to MiniSEED
Viking
GPS data editor, analyzer and viewer

Official Debian packages with lower relevance

Libmseed-dev
seed data records manipulation library (development files)
Python3-pyepsg
easy access to the EPSG database (Python 3)
Sumo
Simulation of Urban MObility (SUMO)

Debian packages in contrib or non-free

Googleearth-package
utility to automatically build a Debian package of Google Earth

Geometry - Debian Science geometry packages

This metapackage will install Debian Science packages related to geometry. You might also be interested in the field::mathematics debtag and, depending on your focus, in the education-mathematics metapackage.

Official Debian packages with high relevance

Carmetal
dynamic geometry software with highly ergonomic UI
Drgeo
interactive geometry software
Geogebra-kde
KDE integration layer for GeoGebra

Official Debian packages with lower relevance

Libcgal-dev
C++ library for computational geometry (development files)
Libgeometry-primitive-perl
module to represent geometric entities
Libmath-geometry-voronoi-perl
Perl module to compute Voronoi diagrams from sets of points
Octave-geometry
extension of MatGeom functionality in Octave
Rubiks
Small collection of Rubik's cube solvers

Packaging has started and developers might try the packaging code in VCS

Libgismo-dev
Geometry plus simulatiom modules development files
Salome-geom
Numerical simulation pre- and post-processor - geometry module

High energy physics - Debian Science High Energy Physics packages

This metapackage will install Debian Science packages related to High Energy Physics, which is a branch of physics that studies the elementary subatomic constituents of matter and radiation, and their interactions. The field is also called Particle Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Official Debian packages with high relevance

Cernlib
CERNLIB data analysis suite - general use metapackage
Cernlib-base
CERNLIB data analysis suite - common files
Cernlib-core
CERNLIB data analysis suite - main libraries and programs
Cernlib-extras
CERNLIB data analysis suite - extra programs
Cernlib-montecarlo
CERNLIB Monte Carlo libraries
Dzedit
CERNLIB data analysis suite - ZEBRA documentation editor
Feynmf
set of LaTeX macros for creating Feynman diagrams
Geant321
[Physics] Particle detector description and simulation tool
Herwig++
Multi-purpose event generator for high energy physics
Kuipc
CERNLIB data analysis suite - KUIP compiler
Kxterm
CERNLIB data analysis suite - KUIP terminal emulator
Libroot-bindings-python5.34
Python extension for ROOT - runtime libraries
Libroot-bindings-ruby5.34
Ruby extension for ROOT - run-time library
Libroot-core5.34
Numerical data analysis framework - shared runtime libraries
Libroot-geom5.34
Geometry library for ROOT - run-time library
Libroot-graf2d-gpad5.34
Canvas and pad library for ROOT - run-time library
Libroot-graf2d-graf5.34
Graf library for ROOT
Libroot-graf2d-postscript5.34
Postscript/PDF renderer library for ROOT
Libroot-graf3d-eve5.34
Event display library for ROOT
Libroot-graf3d-g3d5.34
Basic 3D shapes for ROOT
Libroot-graf3d-gl5.34
GL plugin for ROOT - runtime library
Libroot-gui-ged5.34
GUI element for editing various ROOT objects
Libroot-gui5.34
GUI library for ROOT - run-time library
Libroot-hist-spectrum5.34
Spectra analysis library for ROOT
Libroot-hist5.34
Histogram library for ROOT - run-time library
Libroot-html5.34
Html documentation generator for ROOT - runtime library
Libroot-io-xmlparser5.34
XML parser of ROOT objects - runtime library
Libroot-io5.34
Input/output of ROOT objects - runtime library
Libroot-math-foam5.34
Compact Version of Cellular Event Generator
Libroot-math-genvector5.34
Generalized vector library for ROOT
Libroot-math-mathcore5.34
Core mathemathics library for ROOT
Libroot-math-mathmore5.34
GSL interface library for ROOT
Libroot-math-matrix5.34
Matrix library for ROOT
Libroot-math-minuit5.34
Minuit plugin for ROOT
Libroot-math-mlp5.34
Multi layer perceptron extension for ROOT - run-time libraries
Libroot-math-physics5.34
Physics library for ROOT
Libroot-math-quadp5.34
QuadP extension for ROOT - run-time libraries
Libroot-math-smatrix5.34
Sparse matrix library for ROOT
Libroot-math-splot5.34
Splot library for ROOT
Libroot-math-unuran5.34
Random number generator library
Libroot-misc-memstat5.34
Memory statistics tool for use with ROOT
Libroot-misc-minicern5.34
Small version of CERNLIB for use with ROOT
Libroot-misc-table5.34
Table library for ROOT
Libroot-montecarlo-eg5.34
Event generator library for ROOT
Libroot-montecarlo-vmc5.34
Virtual Monte-Carlo library for ROOT
Libroot-net-auth5.34
Authentication extension for ROOT
Libroot-net-bonjour5.34
Zeroconf extension for ROOT - run-time libraries
Libroot-net-ldap5.34
LDAP extension for ROOT
Libroot-net5.34
Net library for ROOT
Libroot-proof-clarens5.34
Clarens extension for ROOT
Libroot-proof-proofplayer5.34
PROOF plugin for ROOT
Libroot-proof5.34
PROOF library for ROOT
Libroot-roofit5.34
ROOT extension for modeling expected distributions - libraries
Libroot-tmva5.34
Toolkit for multivariate data analysis
Libroot-tree-treeplayer5.34
Library to loop over a ROOT tree
Libroot-tree5.34
Tree library for ROOT
Looptools
Integral Evaluator of One-loop Feynman Diagram
Neuron
Simulation environment for computational models of neurons
Nypatchy
CERNLIB data analysis suite - patch pre-processor for source code
Octave-lhapdf
Octave Bindings for LHAPDF
Paw
Physics Analysis Workstation - a graphical analysis program
Paw++
Physics Analysis Workstation (Lesstif-enhanced version)
Pawserv
CERNLIB data analysis suite - distributed PAW and file transfer servers
Pythia8-root-interface
Interfaces to call ROOT functions in PYTHIA8 code
Rivet
Robust Independent Validation of Experiment and Theory
Rivet-plugins
Analysis plugins of Rivet
Rivet-root-converter
Rivet and ROOT file format converter
Root-macro-fastjet
FastJet macro for CERN ROOT
Root-plugin-geom-gdml
GDML import/export module for ROOT geometries
Root-plugin-geom-geombuilder
Geometry builder plugin for ROOT
Root-plugin-geom-geompainter
Geometry painter plugin for ROOT
Root-plugin-graf2d-asimage
AfterImage plugin for ROOT
Root-plugin-graf2d-qt
Graf2d Qt plugin for ROOT
Root-plugin-graf2d-x11
X window system plugin for ROOT
Root-plugin-graf3d-x3d
X 3D plugin for ROOT
Root-plugin-gui-fitpanel
GUI element for fits plugin for ROOT
Root-plugin-gui-guibuilder
GUI editor plug-in for ROOT
Root-plugin-gui-qt
Qt plugin for ROOT
Root-plugin-gui-sessionviewer
GUI to browse an interactive PROOF session
Root-plugin-hist-hbook
Hbook plugin for ROOT
Root-plugin-hist-histpainter
Histogram painter plugin for ROOT
Root-plugin-hist-spectrumpainter
Spectrum painter plugin for ROOT
Root-plugin-io-sql
SQL plugin for ROOT
Root-plugin-io-xml
XML reader plugin for ROOT
Root-plugin-math-fftw3
FFTw plugin for ROOT
Root-plugin-math-fumili
Fumili plugin for ROOT
Root-plugin-math-minuit2
Minuit version 2 plugin for ROOT
Root-plugin-montecarlo-pythia8
Pythia version 8 plugin for ROOT
Root-plugin-net-globus
Globus plugin for ROOT
Root-plugin-net-krb5
Kerberos (version 5) plugin for ROOT
Root-plugin-proof-peac
PEAC plugin for ROOT - run-time libraries
Root-plugin-sql-mysql
MySQL client plugin for ROOT
Root-plugin-sql-odbc
ODBC plugin for ROOT
Root-plugin-sql-pgsql
PostgreSQL client plugin for ROOT
Root-plugin-tree-treeviewer
GUI to browse a ROOT tree
Root-system
metapackage to install all ROOT packages
Root-system-bin
Numerical data analysis framework - general applications
Root-system-common
Common files for ROOT
Root-system-proofd
Parallel ROOt Facility - distributed, parallel computing
Root-system-rootd
ROOT remote file server
Thepeg
Toolkit for High Energy Physics Event Generation
Thepeg-gui
Java GUI of ThePEG
Zftp
CERNLIB data analysis suite - file transfer program

Official Debian packages with lower relevance

Geant321-doc
[Physics] Documentation for GEANT 3.21
Lhapdf-pdfsets-minimal
Minimal PDF Sets of LHAPDF
Paw-demos
Physics Analysis Workstation examples and tests
Root-system-doc
Tutorial and test suite for the ROOT system

Packaging has started and developers might try the packaging code in VCS

Geant4
toolkit for simulation of particle/nuclear physics in detectors

High energy physics (devel) - Debian Science High Energy Physics development packages

This metapackage will install Debian Science packages related to development of High Energy Physics applications, which is a branch of physics that studies the elementary subatomic constituents of matter and radiation, and their interactions. The field is also called Particle Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Official Debian packages with high relevance

Cernlib-base-dev
CERNLIB data analysis suite - dependencies checking script
Cernlib-core-dev
CERNLIB data analysis suite - core development files
Fcc
Script to compile C/C++ programs and link to Fortran libraries
Herwig++-dev
Herwig++ development files
Libclhep-dev
CLHEP: A Class Library for High Energy Physics - development
Libfastjet-dev
Development files of FastJet
Libfastjet-fortran-dev
Fortran bindings of FastJet - development files
Libfastjetplugins-dev
FastJet plugins - development files
Libfastjettools-dev
Tools for FastJet - development files
Libhepmc-dev
Event Record for Monte Carlo Generators - development files
Libhepmcfio-dev
Monte Carlo event record FIO library - development files
Libhepmcinterface8-dev
HepMC interface for PYTHIA8 - development files (obsolete)
Liblhapdf-dev
[Physics] Les Houches Accord PDF Interface - development files
Libooptools-dev
Development files of LoopTools
Libpythia8-dev
PYTHIA event generator of high energy physics - development files
Librivet-dev
Development files of Rivet
Libroot-bindings-python-dev
Python extension for ROOT - development files
Libroot-bindings-ruby-dev
Ruby extension for ROOT - development headers
Libroot-core-dev
Header files for ROOT
Libroot-geom-dev
Geometry library for ROOT - development files
Libroot-graf2d-gpad-dev
Canvas and pad library for ROOT - development files
Libroot-graf2d-graf-dev
Graf library for ROOT - development files
Libroot-graf2d-postscript-dev
Postscript/PDF renderer library for ROOT - development files
Libroot-graf3d-eve-dev
Event display library for ROOT - development files
Libroot-graf3d-g3d-dev
Basic 3D shapes for ROOT - development files
Libroot-graf3d-gl-dev
GL plugin for ROOT - development files
Libroot-gui-dev
GUI library for ROOT - development files
Libroot-gui-ged-dev
GUI element for editing various ROOT objects - development files
Libroot-hist-dev
Histogram library for ROOT - development files
Libroot-hist-spectrum-dev
Spectra analysis library for ROOT - development files
Libroot-html-dev
Html documentation generator for ROOT - development files
Libroot-io-dev
Input/output of ROOT objects - development files
Libroot-io-xmlparser-dev
XML parser of ROOT objects - development files
Libroot-math-foam-dev
Compact Version of Cellular Event Generator - development files
Libroot-math-genvector-dev
Generalized vector library for ROOT - development files
Libroot-math-mathcore-dev
Core mathemathics library for ROOT - development files
Libroot-math-mathmore-dev
GSL interface library for ROOT - development files
Libroot-math-matrix-dev
Matrix library for ROOT - development files
Libroot-math-minuit-dev
Minuit plugin for ROOT - development files
Libroot-math-mlp-dev
Multi layer perceptron extension for ROOT - development files
Libroot-math-physics-dev
Physics library for ROOT - development files
Libroot-math-quadp-dev
QuadP extension for ROOT - development files
Libroot-math-smatrix-dev
Sparse matrix library for ROOT - development files
Libroot-math-splot-dev
Splot library for ROOT - development files
Libroot-math-unuran-dev
Random number generator library - development files
Libroot-misc-memstat-dev
Memory statistics tool for use with ROOT - development files
Libroot-misc-minicern-dev
Small version of CERNLIB for use with ROOT - development files
Libroot-misc-table-dev
Table library for ROOT - development files
Libroot-montecarlo-eg-dev
Event generator library for ROOT - development files
Libroot-montecarlo-vmc-dev
Virtual Monte-Carlo library for ROOT - development files
Libroot-net-auth-dev
Authentication extension for ROOT - development files
Libroot-net-bonjour-dev
Zeroconf extension for ROOT
Libroot-net-dev
Net library for ROOT - development files
Libroot-net-ldap-dev
LDAP extension for ROOT - development files
Libroot-proof-clarens-dev
Clarens extension for ROOT - development files
Libroot-proof-dev
PROOF library for ROOT - development files
Libroot-proof-proofplayer-dev
PROOF plugin for ROOT - development files
Libroot-roofit-dev
ROOT extension for modeling expected distributions - development
Libroot-static
Static archive of ROOT libraries
Libroot-tmva-dev
Toolkit for multivariate data analysis - development files
Libroot-tree-dev
Tree library for ROOT - development files
Libroot-tree-treeplayer-dev
Library to loop over a ROOT tree - development files
Libsiscone-dev
Seedless Infrared Safe Cone jet finder - development files
Libsiscone-spherical-dev
Spherical version of SISCone - development files
Libthepeg-dev
Development library of ThePEG
Neuron-dev
Neuron simulation environment - Development files
Python3-neuron
Neuron simulation environment - Python bindings
Rivet-plugins-dev
Template generator of Rivet analysis plugin

Official Debian packages with lower relevance

Ckon
automatic build tool for ROOT data analysis software
Clhep-doc
Documentation of CLHEP
Fastjet-doc
Documentation of FastJet
Fastjet-examples
Example source files of FastJet
Hepmc-examples
Event Record for Monte Carlo Generators - example files
Hepmc-reference-manual
Event Record for Monte Carlo Generators - reference manual
Hepmc-user-manual
Event Record for Monte Carlo Generators - user manual
Lhapdf-ccwrap-doc
C++ Bindings for LHAPDF - documentation
Pythia8-doc-html
HTML Documentation of PYTHIA8
Pythia8-doc-worksheet
Worksheet Documentation of PYTHIA8
Pythia8-examples
Example source files of PYTHIA8
Rivet-plugins-doc
HTML documentation for Rivet analysis plugins
Rivet-reference
Rivet code reference
Rivet-user-manual
Robust Independent Validation of Experiment and Theory - User Manual
Siscone-doc-html
Developer's reference manual of SISCone (HTML)
Siscone-doc-pdf
Developer's reference manual of SISCone (PDF)
Siscone-examples
Seedless Infrared Safe Cone jet finder - example files
Thepeg-reference
Code reference of ThePEG

Image analysis - Debian Science image analysis packages

This metapackage will install Debian Science packages related to scientific image acquisition. This might be used in several sciences (as for instance science-dataacquisition, science-viewing and science-typesetting).

Official Debian packages with high relevance

Gpiv
GUI program for Particle Image Velocimetry
Gpivtools
command line programs for Particle Image Velocimetry
Gwyddion
Scanning Probe Microscopy visualization and analysis tool
Limereg
Lightweight Image Registration
Teem-apps
Tools to process and visualize scientific data and images - command line tools

Image analysis development - Debian Science development of image analysis applications

This metapackage will install Debian Science development libraries to develop scientific image analysis applications acquisitions.

Official Debian packages with high relevance

Cimg-dev
powerful image processing library
Libcv-dev
Translation package for libcv-dev
Libimglib2-java
multidimensional image processing library in Java
Liblimereg-dev
Library for lightweight image registration [development files]
Libsimage-dev
generic interface to various image file format libraries. Development files.
Libvigraimpex-dev
development files for the C++ computer vision library
Libvlfeat-dev
Computer vision library focussing on visual features and clustering
Python3-imageio
library for reading and writing image data (Python 3)
Python3-meshio
library for reading and writing mesh data (Python 3)

Official Debian packages with lower relevance

Lib3ds-dev
Autodesk 3D Studio file reader development files
Libfreeimage-dev
Support library for graphics image formats (development files)

Packaging has started and developers might try the packaging code in VCS

Libvisad-java
Visualization for Algorithm Development

Linguistics - Debian Science Linguistics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Linguistics.

Official Debian packages with high relevance

Apertium
Shallow-transfer machine translation engine
Apertium-lex-tools
Constraint-based lexical selection module
Artha
Handy off-line thesaurus based on WordNet
Cg3
Tools for using the 3rd edition of Constraint Grammar (CG-3)
Collatinus
lemmatisation of latin text
Dimbl
Distributed Memory Based Learner
Frog
tagger and parser for natural languages (runtime)
Giella-sme
Giellatekno single language data for North Saami
Hfst
Helsinki Finite-State Transducer Technology
Hfst-ospell
Spell checker library and tool based on HFST
Irstlm
IRST Language Modeling Toolkit
Libcld2-dev
Compact Language Detector 2, development package
Link-grammar
Carnegie Mellon University's link grammar parser
Lttoolbox
Apertium lexical processing modules and tools
Mbt
memory-based tagger-generator and tagger
Mbtserver
Server extensions for the MBT tagger
Python3-pynlpl
PyNLPl is a library for Natural Language Processing (Python 3 version)
Python3-thinc
Practical Machine Learning for NLP in Python
R-cran-lexrankr
extractive summarization of text with the LexRank algorithm
R-cran-snowballc
Snowball stemmers based on the C libstemmer UTF-8 library
Timbl
Tilburg Memory Based Learner
Timblserver
Server extensions for Timbl
Ucto
Unicode Tokenizer
Uctodata
Data files for Ucto
Wordnet
electronic lexical database of English language

Official Debian packages with lower relevance

Apertium-af-nl
Transitional dummy package for apertium-afr-nld
Apertium-apy
Apertium APY service
Apertium-arg
Apertium single language data for Aragonese
Apertium-arg-cat
Apertium translation data for the Aragonese-Catalan pair
Apertium-bel
Apertium single language data for Belarusian
Apertium-bel-rus
Apertium translation data for the Belarusian-Russian pair
Apertium-br-fr
Apertium linguistic data to translate between Breton and French
Apertium-ca-it
Transitional dummy package for apertium-cat-ita
Apertium-cat
Apertium single language data for Catalan
Apertium-cat-srd
Apertium translation data for the Catalan-Sardinian pair
Apertium-crh
Apertium single language data for Crimean Tatar
Apertium-crh-tur
Apertium translation data for the Crimean Tatar-Turkish pair
Apertium-cy-en
Apertium translation data for the Welsh-English pair
Apertium-dan
Apertium single language data for Danish
Apertium-dan-nor
Apertium translation data for the Danish-Norwegian pair
Apertium-en-ca
Transitional dummy package for apertium-eng-cat
Apertium-en-es
Apertium translation data for the English-Spanish pair
Apertium-en-gl
Apertium translation data for the English-Galician pair
Apertium-eo-ca
Apertium translation data for the Esperanto-Catalan pair
Apertium-eo-en
Apertium linguistic data to translate between Esperanto and English
Apertium-eo-es
Apertium translation data for the Esperanto-Spanish pair
Apertium-eo-fr
Apertium translation data for the Esperanto-French pair
Apertium-es-ast
Apertium translation data for the Spanish-Asturian pair
Apertium-es-ca
Transitional dummy package for apertium-spa-cat
Apertium-es-gl
Apertium translation data for the Spanish-Galician pair
Apertium-es-it
Transitional dummy package for apertium-spa-ita
Apertium-es-pt
Apertium translation data for the Spanish-Portuguese pair
Apertium-es-ro
Apertium translation data for the Spanish-Romanian pair
Apertium-eu-en
Apertium translation data for the Basque-English pair
Apertium-eu-es
Apertium translation data for the Basque-Spanish pair
Apertium-fr-ca
Transitional dummy package for apertium-fra-cat
Apertium-fr-es
Apertium translation data for the French-Spanish pair
Apertium-fra
Apertium single language data for French
Apertium-fra-cat
Apertium translation data for the French-Catalan pair
Apertium-hbs
Apertium single language data for Serbo-Croatian
Apertium-hbs-eng
Apertium translation data for the Serbo-Croatian - English pair
Apertium-hbs-mkd
Apertium translation data for the Serbo-Croatian-Macedonian pair
Apertium-hbs-slv
Apertium translation data for the Serbo-Croatian-Slovenian pair
Apertium-hin
Apertium single language data for Hindi
Apertium-id-ms
Transitional dummy package for apertium-ind-zlm
Apertium-is-sv
Apertium translation data for the Icelandic-Swedish pair
Apertium-isl
Apertium single language data for Icelandic
Apertium-isl-eng
Apertium translation data for the Icelandic-English pair
Apertium-ita
Apertium single language data for Italian
Apertium-kaz
Apertium single language data for Kazakh
Apertium-kaz-tat
Apertium translation data for the Kazakh-Tatar pair
Apertium-mk-bg
Apertium translation data for the Macedonian-Bulgarian pair
Apertium-mk-en
Apertium translation data for the Macedonian-English pair
Apertium-mlt-ara
Apertium translation data for the Maltese-Arabic pair
Apertium-nno
Apertium single language data for Norwegian Nynorsk
Apertium-nno-nob
Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
Apertium-nob
Apertium single language data for Norwegian Bokmål
Apertium-oc-ca
Apertium translation data for the Occitan-Catalan pair
Apertium-oc-es
Apertium translation data for the Occitan-Spanish pair
Apertium-oci
Apertium single language data for Occitan
Apertium-pol
Apertium single language data for Polish
Apertium-pt-ca
Transitional dummy package for apertium-por-cat
Apertium-pt-gl
Apertium translation data for the Portuguese-Galician pair
Apertium-rus
Apertium single language data for Russian
Apertium-separable
Reordering separable/discontiguous multiwords
Apertium-sme-nob
Apertium translation data for the Northern Sami-Norwegian Bokmål pair
Apertium-spa
Apertium single language data for Spanish
Apertium-spa-arg
Apertium translation data for the Spanish-Aragonese pair
Apertium-srd
Apertium single language data for Sardinian
Apertium-srd-ita
Apertium translation data for the Sardinian-Italian pair
Apertium-swe
Apertium single language data for Swedish
Apertium-swe-dan
Apertium translation data for the Swedish-Danish pair
Apertium-swe-nor
Apertium translation data for the Swedish-Norwegian pair
Apertium-szl
Apertium single language data for Silesian
Apertium-tat
Apertium single language data for Tatar
Apertium-tur
Apertium single language data for Turkish
Apertium-ukr
Apertium single language data for Ukrainian
Apertium-urd
Apertium single language data for Urdu
Apertium-urd-hin
Apertium translation data for the Urdu-Hindi pair
Frogdata
Data files for Frog
Libcg3-dev
Headers and shared files to develop using the CG-3 library
Libfolia-dev
Implementation of the FoLiA document format (C++ headers)
Libmbt0-dev
memory-based tagger-generator and tagger - development
Libticcutils2-dev
library for TiCC software - development files
Libtimbl3-dev
Tilburg Memory Based Learner - development
Libtimbl4-dev
Tilburg Memory Based Learner - development
Libtimblserver2-dev
Server extensions for Timbl - development
Libucto1-dev
Unicode Tokenizer - development
Python3-nltk
Python3 libraries for natural language processing
Python3-snowballstemmer
Pure Python 3 Snowball stemming library
Python3-streamparser
Python library to parse Apertium stream format
R-cran-nlp
Natural Language Processing Infrastructure for R
R-cran-tm
Text Mining functionality for R

Debian packages in experimental

Sequitur-g2p
Grapheme to Phoneme conversion tool

Packaging has started and developers might try the packaging code in VCS

Spacy
Industrial-strength Natural Language Processing (NLP)
Travatar
tree based machine translation toolkit

No known packages available but some record of interest (WNPP bug)

Python3-timbl
Python bindings for the Tilburg Memory Based Learner (Timbl)

No known packages available

Wnsqlbuilder
SQL version of WordNet 3.0

Logic - Debian Science Logic packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Computational Logic. It contains formula transformation tools, solvers for formulas specified in various logics, interactive proof systems, etc.

Official Debian packages with high relevance

Agda
dependently typed functional programming language
Alt-ergo
Automatic theorem prover dedicated to program verification
Boolector
SMT solver for bit-vectors and arrays
Clasp
conflict-driven nogood learning answer set solver
Coala
translates action languages into answer set programs
Coinor-cbc
Coin-or branch-and-cut mixed integer programming solver
Coinor-symphony
COIN-OR solver for mixed-integer linear programs
Coq
proof assistant for higher-order logic (toplevel and compiler)
Cvc3
Automatic theorem prover for SMT problems
Cvc4
automated theorem prover for SMT problems
Depqbf
solver for quantified boolean formulae
Gringo
grounding tools for (disjunctive) logic programs
Hol-light
HOL Light theorem prover
Hol88
Higher Order Logic, system image
Lbt
converts from LTL formulas to Büchi automata
Mace2
program that searches for finite models of first-order statements
Maria
reachability analyzer for Algebraic System Nets
Matita
interactive theorem prover
Maude
high-performance logical framework
Minisat+
solver for pseudo-Boolean constraints
Mona
theorem prover based on automata
Picosat
SAT solver with proof and core support
Proofgeneral
generic frontend for proof assistants
Prover9
theorem prover and countermodel generator
Sat4j
Efficient library of SAT solvers in Java
Spass
automated theorem prover for first-order logic with equality
Toulbar2
Exact combinatorial optimization for Graphical Models
Why
Software verification tool
Why3
Software verification platform
Z3
theorem prover from Microsoft Research

Official Debian packages with lower relevance

Coinor-libcoinmp-dev
Simple C API for COIN-OR Solvers Clp and Cbc -- development

Machine learning - Debian Science Machine Learning packages

This metapackage will install packages useful for machine learning. Included packages range from knowledge-based (expert) inference systems to software implementing the advanced statistical methods that currently dominate the field.

Official Debian packages with high relevance

Autoclass
automatic classification or clustering
Caffe-cpu
Fast, open framework for Deep Learning (Meta)
Gprolog
GNU Prolog compiler
Libcomplearn-dev
machine-learning through data compression development files
Libcv-dev
Translation package for libcv-dev
Libevocosm-dev
C++ framework for developing evolutionary algorithms
Libfann-dev
Development libraries and header files for FANN
Libga-dev
C++ Library of Genetic Algorithm Components
Liblinear-dev
Development libraries and header files for LIBLINEAR
Libmlpack-dev
intuitive, fast, scalable C++ machine learning library (development libs)
Libocas-dev
Development libraries and header files for LIBOCAS
Libqsearch-dev
nondeterministic quartet tree search library for unrooted trees
Libroot-math-mlp-dev
Multi layer perceptron extension for ROOT - development files
Libroot-montecarlo-vmc-dev
Virtual Monte-Carlo library for ROOT - development files
Libroot-tmva-dev
Toolkit for multivariate data analysis - development files
Libshark-dev
development files for Shark
Libshogun-dev
Large Scale Machine Learning Toolbox
Libsvm-dev
LIBSVM header files
Libtorch3-dev
State of the art machine learning library - development files
Libvigraimpex-dev
development files for the C++ computer vision library
Lua-torch-graph
Graph Computation Package for Torch Framework
Lua-torch-image
Image Load/Save Library for Torch Framework
Lua-torch-nn
Neural Network Package for Torch Framework
Lua-torch-nngraph
Neural Network Graph Package for Torch Framework
Lua-torch-optim
Numeric Optimization Package for Torch Framework
Lua-torch-trepl
REPL Package for Torch Framework
Lua-torch-xlua
Lua Extension Package for Torch Framework
Mcl
Markov Cluster algorithm
Octave-ga
genetic optimization code for Octave
Pgapack
General-purpose genetic algorithm package
Python3-amp
Atomistic Machine-learning Package (python 3)
Python3-genetic
genetic algorithms in Python
Python3-keras
deep learning framework running on Theano or TensorFlow
Python3-lasagne
deep learning library build on the top of Theano (Python3 modules)
Python3-mdp
Modular toolkit for Data Processing
Python3-mlpy
high-performance Python package for predictive modeling
Python3-opencv
Python 3 bindings for the computer vision library
Python3-sklearn
Python modules for machine learning and data mining - Python 3
Python3-statsmodels
Python3 module for the estimation of statistical models
Python3-thinc
Practical Machine Learning for NLP in Python
R-cran-amore
GNU R: A MORE flexible neural network package
R-cran-bayesm
GNU R package for Bayesian inference
R-cran-class
GNU R package for classification
R-cran-cluster
GNU R package for cluster analysis by Rousseeuw et al
R-cran-gbm
GNU R package providing Generalized Boosted Regression Models
R-cran-mass
GNU R package of Venables and Ripley's MASS
R-cran-mcmcpack
R routines for Markov chain Monte Carlo model estimation
R-cran-metrics
GNU R evaluation metrics for machine learning
R-cran-mlbench
GNU R Machine Learning Benchmark Problems
R-cran-mlr
Machine learning in GNU R
R-cran-mnp
GNU R package for fitting multinomial probit (MNP) models
R-cran-msm
GNU R Multi-state Markov and hidden Markov models in continuous time
R-cran-tgp
GNU R Bayesian treed Gaussian process models
Root-system
metapackage to install all ROOT packages
Scilab-ann
Scilab module for artificial neural networks
Torch-core-free
Scientific Computing Framework For Luajit (Core Components)
Toulbar2
Exact combinatorial optimization for Graphical Models
Vowpal-wabbit
fast and scalable online machine learning algorithm
Weka
Machine learning algorithms for data mining tasks
Yap
High-performance Prolog System

Official Debian packages with lower relevance

Ask
Adaptive Sampling Kit for big experimental spaces
Libacovea-dev
library for analyzing compiler options via evolutionary algorithms
Libdlib-dev
C++ toolkit for machine learning and computer vision - development
Libfclib-dev
read and write problems from the Friction Contact Library (headers)
Libmkldnn-dev
Intel Math Kernel Library for Deep Neural Networks (dev)
Libxsmm-dev
Matrix operations and deep learning primitives (development files)
Python3-hdmedians
high-dimensional medians in Python3
Science-numericalcomputation
Debian Science Numerical Computation packages
Science-statistics
Debian Science Statistics packages
Science-typesetting
Debian Science typesetting packages

Debian packages in contrib or non-free

Caffe-cuda
Fast, open framework for Deep Learning (Meta)

Packaging has started and developers might try the packaging code in VCS

Spacy
Industrial-strength Natural Language Processing (NLP)
Streamlit
fast way to build custom ML tools

Unofficial packages built by somebody else

Python3-orange
Data mining framework

No known packages available but some record of interest (WNPP bug)

Flann
Fast Library for Approximate Nearest Neighbors
Pybrain
Modular Machine Learning Library

Mathematics - Debian Science Mathematics packages

This metapackage will install Debian Science packages related to Mathematics. You might also be interested in the field::mathematics debtag and, depending on your focus, in the education-mathematics metapackage.

Official Debian packages with high relevance

4ti2
mathematical tool suite for problems on linear spaces -- tools
Agda
dependently typed functional programming language
Auto-07p
software for continuation and bifurcation problems in ODE
Axiom
General purpose computer algebra system: main binary and modules
Bliss
tool to compute graph automorphisms and labelings -- bin
Cohomcalg
sheaf cohomology of line bundles on toric varieties
Coinor-cbc
Coin-or branch-and-cut mixed integer programming solver
Coinor-symphony
COIN-OR solver for mixed-integer linear programs
Coq
proof assistant for higher-order logic (toplevel and compiler)
Cryptominisat
SAT solver command line interface
Eclib-tools
Programs for modular symbols and elliptic curves over Q
Feel++-apps
A library for the finite element method
Fenics
Automated Solution of Differential Equations
Flintqs
Program using quadratic sieve to factor integers
Form
Symbolic manipulation system
Fplll-tools
Tools to compute LLL-reduction of Euclidian lattices
Freefem
PDE oriented language using Finite Element Method
Freefem++
Provides the binaries of the FreeFem++ FE suite
Freefem3d
Language and solver for partial differential equations in 3D
Freemat
mathematics framework (mostly matlab compatible)
Frobby
Computations with monomial ideals
Gap
computer algebra system for Groups, Algorithms and Programming
Gap-character-tables
GAP Library of character tables
Gap-design
block designs for GAP
Gap-factint
advanced methods for factoring integers for GAP
Gap-float
multi-precision floating-point computation for GAP
Gap-grape
GRaph Algorithms using PErmutation groups for GAP
Gap-guava
coding theory library for GAP
Gap-laguna
LAGUNA GAP package
Gap-openmath
OpenMath phrasebook for GAP
Gap-prim-groups
Database of primitive groups for GAP
Gap-small-groups
Database of small groups for GAP
Gap-small-groups-extra
Large database of small groups for GAP
Gap-sonata
Systems Of Nearrings And Their Applications for GAP
Gap-table-of-marks
GAP TomLib - The GAP Library of Tables of Marks
Gap-toric
toric variety for GAP
Gap-trans-groups
Database of transitive groups for GAP
Geneagrapher
Create tree from Mathematics Genealogy Project
Geogebra
Dynamic mathematics software for education
Geomview
interactive geometry viewing program
Gerris
Fluid Flow Solver
Getdp
general environment for the treatment of discrete problems
Gfan
program for computing with Groebner fans
Ginac-tools
GiNaC symbolic framework support tools
Gmsh
Three-dimensional finite element mesh generator
Graphviz
rich set of graph drawing tools
Hol-light
HOL Light theorem prover
Julia
high-performance programming language for technical computing
Kseg
Sketchpad for planar Euclidean geometry
Lcalc
program for calculating with L-functions
Libmatheval1
GNU library for evaluating symbolic mathematical expressions (runtime)
Lp-solve
Solve (mixed integer) linear programming problems
Lrcalc
programs for calculating Littlewood-Richardson coefficients
Lrslib
package to enumerate vertices and extreme rays of a convex polyhedron
Magnus
Computational group theory software with GUI
Mathicgb
Compute Groebner bases (command line tool)
Mathomatic
portable Computer Algebra System (CAS)
Matita
interactive theorem prover
Maxima-sage
Computer algebra system -- base system
Mcl
Markov Cluster algorithm
Minisat
Fast and lightweight SAT solver
Model-builder
graphical ODE simulator
Mumps-test
Example/test binaries using MUMPS
Nauty
library for graph automorphisms -- interface and tools
Netgen
Automatic 3d tetrahedral mesh generator
Normaliz
math computing tools for affine monoids, rational polytopes and cones
Octave
GNU Octave language for numerical computations
Palp
Package for Analyzing Lattice Polytopes
Pari-extra
PARI/GP Computer Algebra System extra data files
Pari-gp
PARI/GP Computer Algebra System binaries
Planarity
Program for planarity-related graph algorithms
Polylib-utils
Various tools using libpolylib
Proofgeneral
generic frontend for proof assistants
Proofgeneral-coq
generic interface for proof assistants - coq support
Prover9
theorem prover and countermodel generator
Pyomo
PYthon Optimization Modeling Objects
Python3-deap
Distributed Evolutionary Algorithms in Python3
Python3-dolfin
Python interface for DOLFIN (Python 3)
Python3-ffc
compiler for finite element variational forms (Python 3)
Python3-minieigen
Wrapper of parts of the Eigen library (Python 3)
Python3-openturns
Python3 front-end of OpenTURNS (aka TUI)
Python3-sagenb-export
Convert SageNB Notebooks (Python 3)
Python3-ufl
unified language for form-compilers (Python 3)
Qhull-bin
calculate convex hulls and related structures (utilities)
Qsopt-ex
Exact linear programming solver
Regina-normal
mathematical software for low-dimensional topology
Rheolef
efficient Finite Element environment
Rubiks
Small collection of Rubik's cube solvers
Sagemath
Open Source Mathematical Software
Sagemath-database-conway-polynomials
Database of Conway polynomials
Sagemath-database-elliptic-curves
Databases for elliptic curves
Sagemath-database-graphs
Databases of graphs
Sagemath-database-mutually-combinatorial-designs
Databases of combinatorial designs
Sagemath-database-polytopes
Databases of polytopes
Science-statistics
Debian Science Statistics packages
Scilab
Scientific software package for numerical computations
Scilab-ann
Scilab module for artificial neural networks
Scilab-scimax
Symbolic computations for Scilab based on Maxima
Scotch
programs and libraries for graph, mesh and hypergraph partitioning
Singular
Computer Algebra System for Polynomial Computations
Snappea
program for creating and studying hyperbolic 3-manifolds
Surf-alggeo
visualization of real algebraic geometry
Sympow
mathematical program for SYMmetric POWer elliptic curve L-functions -- program
Tachyon
Parallel/Multiprocessor Standalone Ray Tracer - metapackage
Tetgen
Quality Tetrahedral Mesh Generator
Toulbar2
Exact combinatorial optimization for Graphical Models
Wxmaxima
GUI for the computer algebra system Maxima
Xcas
Computer Algebra System - console and graphical calculator
Xmaxima
Computer algebra system -- x interface
Xmds
eXtensible Multi-Dimensional Simulator
Xmds2
eXtensible Multi-Dimensional Simulator

Official Debian packages with lower relevance

Ann-tools
Approximate Nearest Neighbor Searching library (tools)
Evolver-nox
Surface Evolver - with no X support
Evolver-ogl
Surface Evolver - with OpenGL display
Gap-gapdoc
GAPDoc - A Meta Package for GAP Documentation
Gap-io
low level C library IO bindings for GAP
Gap-online-help
GAP computer algebra system, online help
Gap-scscp
SCSCP protocol in GAP
Gmp-ecm
Factor integers using the Elliptic Curve Method
Netgen-doc
Automatic 3d tetrahedral mesh generator documentation
Primesieve
fast prime number generator C/C++ library
R-cran-evd
GNU R Functions for extreme value distributions
Sagetex
Embed Sage code and plots into LaTeX

Debian packages in contrib or non-free

Matlab-support
distro integration for local MATLAB installations

Packaging has started and developers might try the packaging code in VCS

Eprover
Theorem prover for first-order logic with equality
Isabelle
generic theorem proving environment

Unofficial packages built by somebody else

Octaviz
3D visualization system for Octave

Mathematics-dev - Debian Science Mathematics-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Mathematics.

You might also be interested in the science-mathematics metapackage.

Official Debian packages with high relevance

Code-saturne-bin
General purpose Computational Fluid Dynamics (CFD) software - binaries
Code-saturne-include
General purpose Computational Fluid Dynamics (CFD) software - includes
Coinor-libcoinmp-dev
Simple C API for COIN-OR Solvers Clp and Cbc -- development
Cppad
Automatic Differentiation of C++ algorithms, dummy package
Fenics
Automated Solution of Differential Equations
Fflas-ffpack
Finite field linear algebra subroutines/package
Fftw-dev
library for computing Fast Fourier Transforms
Gap-dev
GAP computer algebra system, compiler and development files
Jel-java
Library for evaluating algebraic expressions in Java
Libalglib-dev
Development files for the alglib library
Libann-dev
Approximate Nearest Neighbor Searching library (development files)
Libarmadillo-dev
streamlined C++ linear algebra library - Headers
Libarpack++2-dev
Object-oriented version of the ARPACK package (development)
Libarpack2-dev
Fortran77 subroutines to solve large scale eigenvalue problems (development)
Libatlas-base-dev
Automatically Tuned Linear Algebra Software, generic static
Libblas-dev
Basic Linear Algebra Subroutines 3, static library
Libblis-dev
BLAS-like Library Instantiation Software Framework (dev,32bit,meta)
Libblitz0-dev
C++ template class library for scientific computing - libdev
Libbraiding-dev
computations on braid groups (development files)
Libbrial-dev
polynomials over Boolean Rings, core development files
Libcdd-dev
Library for finding vertices of convex polytopes, development
Libcgal-dev
C++ library for computational geometry (development files)
Libcminpack-dev
Nonlinear equations and nonlinear least squares problems - development
Libcneartree-dev
Library and headers for solving the Nearest Neighbor Problem
Libcombblas-dev
an extensible parallel graph library for graph analytics
Libcqrlib-dev
Library and headers for quaternion arithmetic and rotation math
Libcvector-dev
ANSI C implementation of dynamic arrays (development files)
Libdeal.ii-dev
Differential Equations Analysis Library - development files
Libdogleg-dev
Powell's dog-leg nonlinear least squares solver for sparse matrices
Libdouble-conversion-dev
routines to convert IEEE floats to and from strings (development files)
Libdune-grid-dev
toolbox for solving PDEs -- grid interface (development files)
Libec-dev
Library for modular symbols and elliptic curves over Q (development)
Libecm-dev
dummy package
Libeigen3-dev
lightweight C++ template library for linear algebra
Libfeel++-dev
A library for the finite element method
Libfftw3-dev
Library for computing Fast Fourier Transforms - development
Libflann-dev
Fast Library for Approximate Nearest Neighbors - development
Libflint-arb-dev
C library for arbitrary-precision ball arithmetic, development files
Libflint-dev
C library for number theory, development files
Libfplll-dev
Library for LLL-reduction of Euclidean lattices, development
Libfreefem++-dev
Provides the development files of the FreeFem++ FE suite
Libfreefem-dev
Development library, header files and manpages
Libfrobby-dev
Computations with monomial ideals (development tools)
Libgemmlowp-dev
small self-contained low-precision GEMM library
Libgf2x-dev
Routines for fast arithmetic in GF(2)[x] (development files)
Libgivaro-dev
arithmetic and algebraic computations - development files
Libglpk-dev
linear programming kit - development files
Libglpk-java
Java binding to the GNU Linear Programming Kit
Libgnuplot-iostream-dev
C++ programming interface for gnuplot. Headers
Libgsl0-dev
GNU Scientific Library (GSL) -- development package
Libhomfly-dev
compute the homfly polynomial of a link (development files)
Libhypre-dev
High Performance Matrix Preconditioners - Development Files
Libigraph0-dev
library for creating and manipulating graphs - development files
Libiml-dev
Integer Matrix Library, development files
Libitsol-dev
ITerative SOLvers - devel
Libjama-dev
C++ Linear Algebra Package
Libjgrapht0.6-java
mathematical graph theory library for Java
Libjgrapht0.8-java
mathematical graph theory library for Java
Liblapack-dev
Library of linear algebra routines 3 - static version
Liblbfgs-dev
L-BFGS solver for unconstrained nonlinear optimization problems
Liblfunction-dev
development files for liblfunction
Liblinbox-dev
Library for exact linear algebra - development files
Liblip-dev
reliable interpolation of multivariate scattered data
Liblrcalc-dev
library for calculating Littlewood-Richardson coefficients - development files
Libm4ri-dev
Method of the Four Russians Inversion library, development files
Libm4rie-dev
extended Method of the Four Russians Inversion library, development files
Libmadlib-dev
mesh adaptation library
Libmatheval-dev
GNU library for evaluating symbolic mathematical expressions (development)
Libmathic-dev
C++ library for Groebner basis computation (developer tools)
Libmathicgb-dev
Compute Groebner bases (developer tools)
Libmatio-dev
MATLAB MAT File I/O Library - development files
Libmpfi-dev
multiple precision floating-point interval computation library -- libdev
Libmpfrc++-dev
multi-precision floating point number class for C++
Libmuparser-dev
fast mathematical expressions parse library (development)
Libnauty2-dev
library for graph automorphisms -- development package
Libnewmat10-dev
matrix manipulations library (C++ headers files)
Libnfft3-dev
development files for the NFFT library
Libnglib-dev
Automatic 3d tetrahedral mesh generator development files
Libopenblas-dev
Optimized BLAS (linear algebra) library (dev, meta)
Libopenturns-dev
headers and development libraries for OpenTURNS
Libp4est-dev
Algorithms for Parallel Adaptive Mesh Refinement - development files
Libparsington-java
mathematical expression parser for Java
Libplb-dev
CFD solver based on the lattice Boltzmann method. Development files
Libpolybori-dev
polynomials over Boolean Rings, core development files
Libpolybori-groebner-dev
development files for libpolybori-groebner
Libprimesieve-dev
fast prime number generator C/C++ library -- libdev
Libpynac-dev
Engine for symbolic geometric calculus for Python (development files)
Libqcustomplot-dev
Qt C++ widget for plotting - header
Libqd-dev
Double-double and quad double types in C++ and F90
Libqhull-dev
calculate convex hulls and related structures (development files)
Libqsopt-ex-dev
Exact linear programming solver -- development files
Libquadrule-dev
Development files for quadrule
Libranlip-dev
generates random variates with multivariate Lipschitz density
Libratpoints-dev
development files for libratpoints
Librw-dev
Compute rank-width and rank-decompositions of graphs (development)
Libscscp1-dev
IMCCE SCSCP C Library -- development package
Libscythestat-dev
header files for Scythe statistics library
Libsopt-dev
Development package for Sparse OPTimisation library
Libsparskit-dev
basic tool-kit for sparse matrix computations - devel
Libspooles-dev
SPOOLES SParse Object Oriented Linear Equations Solver development files
Libstxxl-dev
Development libraries for STXXL
Libsuitesparse-dev
libraries for sparse matrices computations (development files)
Libsuperlu-dev
Direct solution of large, sparse systems of linear equations
Libsymmetrica2-dev
Symmetrica Combinatoric C Library -- development package
Libtachyon-dev
Parallel/Multiprocessor Ray Tracing Software, development files
Libtnt-dev
interface for scientific computing in C++
Libug-dev
software framework for finite element methods (development files)
Libviennacl-dev
Scientific computing library written in C++ based on OpenCL
Libxsmm-dev
Matrix operations and deep learning primitives (development files)
Libzn-poly-dev
development files for libzn-poly
Minpack-dev
nonlinear equations and nonlinear least squares static library
Petsc-dev
Virtual package depending on latest PETSc development package
Python3-asteval
minimalistic evaluator of Python 3 expression using ast module
Python3-brial
polynomials over Boolean Rings, Python 3 module
Python3-bumps
data fitting and Bayesian uncertainty modeling for inverse problems (Python 3)
Python3-cryptominisat
Python bindings for the CryptoMiniSat SAT solver (Python 3)
Python3-cvxopt
Python3 package for convex optimization
Python3-cypari2
Python interface to PARI -- Python 3
Python3-dolfin
Python interface for DOLFIN (Python 3)
Python3-dtcwt
Dual-Tree Complex Wavelet Transform library for Python 3
Python3-ffc
compiler for finite element variational forms (Python 3)
Python3-gimmik
generator of matrix multiplication kernels (Python 3)
Python3-gpyfft
Wrapper for the OpenCL FFT library clFFT (Python 3)
Python3-linop
Linear mathematical operators in Python (Python 3)
Python3-ltfatpy
Large Time-Frequency Toolbox (LTFAT) in Python
Python3-numexpr
Fast numerical array expression evaluator for Python 3 and NumPy
Python3-numpy
Fast array facility to the Python 3 language
Python3-openturns
Python3 front-end of OpenTURNS (aka TUI)
Python3-optlang
sympy based mathematical programming language (Python 3)
Python3-petsc4py
Python 3 bindings for PETSc libraries
Python3-pynfft
Python bindings for the NFFT3 library - Python 3
Python3-pyviennacl
Python bindings for ViennaCL linear algebra library (for Python 3)
Python3-slepc4py
??? missing short description for package python3-slepc4py :-(
Python3-ufl
unified language for form-compilers (Python 3)
Sfftw-dev
library for computing Fast Fourier Transforms
Slepc-dev
Scalable Library for Eigenvalue Problem Computations
Trilinos-all-dev
object-oriented framework for large-scale problems - development files (ALL)

Official Debian packages with lower relevance

Cfortran
Header file permitting Fortran routines to be called in C/C++
Fflas-ffpack-dev-doc
FFLAS-FFPACK Developer Documentation
Fflas-ffpack-user-doc
FFLAS-FFPACK User Documentation
Givaro-dev-doc
Developer Documentation for Givaro (obsolete)
Givaro-user-doc
User Documentation for Givaro (obsolete)
Jsurf-alggeo
Java based visualization library for real algebraic geometry
Libdune-functions-dev
toolbox for solving PDEs -- interface for functions (development files)
Libdune-grid-glue-dev
toolbox for solving PDEs -- compute couplings between grids (development files)
Libdune-istl-dev
toolbox for solving PDEs -- iterative solvers (development files)
Libdune-localfunctions-dev
toolbox for solving PDEs -- local basis (development files)
Libdune-pdelab-dev
toolbox for solving PDEs -- discretization module (development files)
Libdune-typetree-dev
toolbox for solving PDEs -- typed tree template library (development files)
Libdune-uggrid-dev
software framework for finite element methods (development files)
Libitpp-dev
C++ library of signal processing and communication routines: Headers
Libjlapack-java
LAPACK numerical subroutines translated from their Fortran 77 source
Liblrs-dev
package to enumerate vertices and extreme rays (development file)
Libmtj-java
Java library for developing numerical applications
Libnetlib-java
collection of mission-critical software components for linear algebra systems
Libqrupdate-dev
Fast updates of QR and Cholesky decompositions -- static library
Libsollya-dev
library for safe floating-point code development -- libdev
Libtrilinos-dev
parallel solver libraries within an object-oriented software framework
Openturns-examples
examples of OpenTURNS functionalities
Python3-msgpack-numpy
serialize numpy arrays using msgpack
Sollya
library for safe floating-point code development -- tool

Debian packages in contrib or non-free

Libmkl-full-dev
Intel® Math Kernel Library (Intel® MKL) (Full Version Dev)
Libparmetis-dev
Parallel Graph Partitioning and Sparse Matrix Ordering Libs: Devel
Libsuitesparse-metis-dev
collection of libraries for computations for sparse matrices
Libtestu01-0-dev
testing suite for uniform random number generators -- libdevel
Libtet1.4-dev
Quality Tetrahedral Mesh Generator
Libtet1.4.2-dev
A Quality Tetrahedral Mesh Generator

Debian packages in New queue (hopefully available soon)

Libmps-dev
Multiprecision polynomial solver (development)

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev
Basic Linear Algebra Subroutines 3, static library
Libgismo-dev
Geometry plus simulatiom modules development files
Liblevmar-dev
Levenberg-Marquardt nonlinear least squares algorithm (devel)

Meteorology - Debian Science Meteorology packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Meteorology and Climate.

Official Debian packages with high relevance

Cdftools
Diagnostic tools for NEMO netCDF output
Cdo
Climate Data Operators
Cmor-tables
MIP tables for the Climate Model Output Rewriter library
Coda
Common Data Access framework for Earth science
Cylc
Workflow scheduler
Dballe
Database for point-based meteorological data (Command line tools)
Ecaccess
clients to access ECMWF facilities
Fcm
Flexible Configuration Manager
Ferret-vis
Interactive data visualization and analysis environment
Flexpart
Particle Dispersion model for tracing air transport phenomena
Flextra
Trajectory model for tracing air transport phenomena
Grads
Grid Analysis and Display System for earth science data
Gwyddion
Scanning Probe Microscopy visualization and analysis tool
Libdap-bin
Binaries for the libdap Data Access Protocol library
Libdap-doc
Documentation for the libdap Data Access Protocol library
Libeccodes-tools
GRIB decoding/encoding software (utilities)
Libemos-bin
ECMWF Interpolation Library - binaries
Magics++
Executables for the magics++ library
Makedepf90
Fortran-90 dependency processor for Makefiles
Metview
Interactive data visualization and analysis environment,
Ncl-ncarg
NCAR Command Language and NCAR graphics
Nco
Command-line operators to analyze netCDF files
Ncview
X11 visual browser for NetCDF format files
Python3-cdo
Python3 module for Climate Data Operators
Python3-cmor
Python3 interface to CMOR
Python3-drslib
Library for processing the CMIP5 Data Reference Syntax (Python3)
Python3-eccodes
Python 3 module Python interface to the ecCodes BUFR and GRIB de/encoder
Python3-ferret
Python3 wrapper for the Ferret visualization and analysis environment,
Python3-grib
Python 3 module for reading and writing GRIB files
Python3-gsw
Python 3 implementation of the Thermodynamic Equation of Seawater
Python3-iapws
Python3 implementation of the international APWS-IF97 steam tables
Python3-metaconfig
Python ConfigParser bootstrapping library (Python3)
Python3-netcdf4
Python 3 interface to the netCDF4 (network Common Data Form) library
Python3-sphere
Python3 interface to the spherepack scientific library.
Sasview
Small Angle Scattering Analysis suite
Vistrails
Science visualisation workflow toolkit
Zygrib
Weather data visualization, GRIB file viewer

Official Debian packages with lower relevance

Gerris
Fluid Flow Solver
Gnudatalanguage
Free IDL compatible incremental compiler
Octave-octcdf
NetCDF data files interface for Octave
Paraview
Parallel Visualization Application
Python3-openturns
Python3 front-end of OpenTURNS (aka TUI)
R-base
GNU R statistical computation and graphics system

No known packages available but some record of interest (WNPP bug)

Geonetwork
Catalog application to manage spatially referenced resources through the web

Meteorology-dev - Debian Science Meteorology-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Meteorology and Climate.

You might also be interested in the science-meteorology metapackage.

Official Debian packages with high relevance

Fftw-dev
library for computing Fast Fourier Transforms
Libaec-dev
Development files for the Adaptive Entropy Coding library
Libblas-dev
Basic Linear Algebra Subroutines 3, static library
Libcdi-dev
Development files for the climate data interface library
Libcmor-dev
Development files for Climate Model Output Rewriter
Libcoarrays-dev
Co-Array Fortran libraries
Libcoda-dev
Development files for the CODA framework for Earth sciences
Libcoda-java
Java interface for Common Data Access Framework
Libdap-dev
Development files (headers and static libraries) for libdap
Libeccodes-dev
GRIB and BUFR decoding/encoding software library (development)
Libeccodes-tools
GRIB decoding/encoding software (utilities)
Libemos-dev
ECMWF Interpolation Library - development
Libfftw3-dev
Library for computing Fast Fourier Transforms - development
Libfftw3-doc
Documentation for fftw version 3
Libgadap-dev
Development and static libraries for GADAP
Libgctp-dev
General Cartographic Transformation Package - development files
Libgrib2c-dev
NCEP GRIB2 library - development files
Libhdfeos-dev
Development files for the HDF-EOS4 library
Libhe5-hdfeos-dev
Development files for the HDF-EOS5 library
Liblapack-dev
Library of linear algebra routines 3 - static version
Liblapack-doc
Library of linear algebra routines 3 - documentation
Liblas-dev
ASPRS LiDAR data translation library - C++ development files
Libmagics++-dev
Development files for ECMWF plotting software MAGICS++
Libncarg-bin
NCAR command-language library - development tools
Libnetcdf-dev
creation, access, and sharing of scientific data
Liboasis3-dev
Development files for OASIS3 climate model coupler
Libopenturns-dev
headers and development libraries for OpenTURNS
Libproj-dev
Cartographic projection library (development files)
Librsl-dev
Development files for RSL
Libsphere-dev
Development files for Spherepack scientific library
Libterralib-dev
C++ library for Geographical Information Systems -- development package
Libudunits2-dev
Development files for the libunits physical units package
Libwreport-dev
library for working with weather reports
Netcdf-bin
Programs for reading and writing NetCDF files
Python3-coda
Python3 interface for CODA science formats library
Python3-gpyfft
Wrapper for the OpenCL FFT library clFFT (Python 3)
Python3-openturns
Python3 front-end of OpenTURNS (aka TUI)
Python3-sasmodels
Theoretical models for small angle scattering (Python 3)
Python3-ulmo
Simple & fast Python 3 access to public hydrology & climatology data
R-cran-rnetcdf
GNU R package that provides an R interface to NetCDF datasets
Sfftw-dev
library for computing Fast Fourier Transforms
Wcslib-dev
Header files and static library for wcslib and pgsbox
Wcslib-doc
API documentation for wcslib

Official Debian packages with lower relevance

Gfortran
GNU Fortran 95 compiler
Ksh
Real, AT&T version of the Korn shell
Libfeel++-dev
A library for the finite element method
Openturns-examples
examples of OpenTURNS functionalities
Pkg-config
manage compile and link flags for libraries
Python3-coards
COARDS-compliant time parser (Python 3)
Udunits-bin
Utility for handling units of physical quantities

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev
Basic Linear Algebra Subroutines 3, static library

Nanoscale physics - Debian Science Nanoscale Physics packages

This metapackage will install Debian Science packages related to Nanoscale Physics, which corresponds to the study of physical systems typically ranging from 1 to 100 nm in size. The properties of such systems usually depend on the number of atoms they are made of, while this number is still relatively large for an accurate description.

The nanoscale is the meeting point of classical and quantum physics. Previous research efforts were considering either smaller systems, for which everybody could develop their own methods and software independently, or much bigger systems, for which it was clearly impossible to provide a fine-grained description. Addressing the issues raised by the nanoscale requires however cooperative and coordinated efforts in a multidisciplinary context. This metapackage is part of such an endeavor.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Official Debian packages with high relevance

Abinit
package for electronic structure calculations
Ase
Atomic Simulation Environment
Avogadro
Molecular Graphics and Modelling System
Binoculars
Surface X-ray diffraction 2D detector data reduction
Cadabra
field-theory motivated computer algebra system
Cbflib-bin
utilities to manipulate CBF files
Cod-tools
tools for manipulating CIF format files
Cp2k
Ab Initio Molecular Dynamics
Drawxtl
crystal structure viewer
Etsf-io
Binary tools to check, merge and read ETSF files
Extrema
powerful visualization and data analysis tool
Feynmf
set of LaTeX macros for creating Feynman diagrams
Fityk
general-purpose nonlinear curve fitting and data analysis
Garlic
visualization program for biomolecules
Gdis
molecular and crystal model viewer
Ggobi
Data visualization system for high-dimensional data
Ghemical
GNOME molecular modelling environment
Gnuplot
Command-line driven interactive plotting program.
Gpaw
DFT and beyond within the projector-augmented wave method
Gperiodic
periodic table application
Grace
XY graphing and plotting tool
Graphviz
rich set of graph drawing tools
Gsl-bin
GNU Scientific Library (GSL) -- binary package
Gwyddion
Scanning Probe Microscopy visualization and analysis tool
Libblas3
Basic Linear Algebra Reference implementations, shared library
Libgsl0ldbl
GNU Scientific Library (GSL) -- library package
Liblapack3
Library of linear algebra routines 3 - shared version
Libssm-bin
macromolecular superposition library - binaries
Mayavi2
scientific visualization package for 2-D and 3-D data
Mpich
Implementation of the MPI Message Passing Interface standard
Mpqc
Massively Parallel Quantum Chemistry Program
Nco
Command-line operators to analyze netCDF files
Ncview
X11 visual browser for NetCDF format files
Netcdf-bin
Programs for reading and writing NetCDF files
Octave
GNU Octave language for numerical computations
Openmpi-bin
high performance message passing library -- binaries
Openmx
package for nano-scale material simulations
Psi3
Quantum Chemical Program Suite
Python3-lmfit
Least-Squares Minimization with Constraints (Python 3)
Python3-scipy
scientific tools for Python 3
Python3-sympy
Computer Algebra System (CAS) in Python (Python 3)
Pyxplot
data plotting program producing publication-quality output
Quantum-espresso
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
Sasview
Small Angle Scattering Analysis suite
Science-numericalcomputation
Debian Science Numerical Computation packages
Scilab
Scientific software package for numerical computations
Udav
library for scientific graphs (window interface)
V-sim
Visualize atomic structures

Official Debian packages with lower relevance

Axiom
General purpose computer algebra system: main binary and modules
Dx
OpenDX (IBM Visualization Data Explorer) - main package
Dx-doc
OpenDX (IBM Visualization Data Explorer) - documentation
Dxsamples
Sample programs for the OpenDX Data Explorer
Feel++-apps
A library for the finite element method
Gpiv
GUI program for Particle Image Velocimetry
Gpivtools
command line programs for Particle Image Velocimetry
Hdf5-helpers
HDF5 - Helper tools
Hdf5-tools
HDF5 - Runtime tools
Libgraphviz-perl
Perl interface to the GraphViz graphing tool
Maxima
Computer algebra system -- base system
Mpich-doc
Documentation for MPICH
Netcdf-doc
Documentation for NetCDF
Openmpi-doc
high performance message passing library -- man pages
Pymca
Applications and toolkit for X-ray fluorescence analysis -- scripts
Python3-pygraphviz
Python interface to the Graphviz graph layout and visualization package (Python 3)
Qtiplot
data analysis and scientific plotting
Scidavis
application for scientific data analysis and visualization
Science-mathematics
Debian Science Mathematics packages
Science-statistics
Debian Science Statistics packages

Packaging has started and developers might try the packaging code in VCS

Fdmnes
calculates spectra of different spectroscopies

Unofficial packages built by somebody else

Octaviz
3D visualization system for Octave

No known packages available but some record of interest (WNPP bug)

Exciting
All-electron full-potential electronic-structure code

No known packages available

Ape
Atomic pseudopotential generator
Atompaw
PAW atomic dataset generator
Bigdft
Wavelet-based electronic-structure calculations
Liblevmar-2-6
Levenberg-Marquardt nonlinear least squares algorithms
Octopus
Real-space TDDFT-based electronic-structure code
Wannier90-1
Maximally Localized Wannier Functions
Wannier90-2
Maximally Localized Wannier Functions

Nanoscale physics development - Debian Science Nanoscale Physics development packages

This metapackage will install Debian Science packages which might be helpful for the development of applications for Nanoscale Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the nanoscale-physics, physics and education-physics metapackages.

Official Debian packages with high relevance

Abinit-doc
package for electronic structure calculations (Documentation)
Gsl-bin
GNU Scientific Library (GSL) -- binary package
Libblas-dev
Basic Linear Algebra Subroutines 3, static library
Libcbf-dev
development files for CBFlib
Libccp4-dev
CCP4 core functionality - development files
Libcexceptions-dev
C exception handling library (development files)
Libclipper-dev
object oriented development kit for crystallographic computing
Libcod-precision-perl
COD precision handling module for Perl language
Libetsf-io-dev
Static libraries and Fortran module files of ETSF_IO
Libetsf-io-doc
Developer documentation API and tutorials for ETSF_IO
Libfftw3-dev
Library for computing Fast Fourier Transforms - development
Libgsl0-dev
GNU Scientific Library (GSL) -- development package
Libhdf5-dev
HDF5 - development files - serial version
Liblapack-dev
Library of linear algebra routines 3 - static version
Liblapack-doc
Library of linear algebra routines 3 - documentation
Libmpich-dev
Development files for MPICH
Libnetcdf-dev
creation, access, and sharing of scientific data
Liboce-ocaf-dev
OpenCASCADE Community Edition CAE platform library development files
Liboce-visualization-dev
OpenCASCADE Community Edition CAE platform library development files
Libopenmpi-dev
high performance message passing library -- header files
Libroot-math-mlp-dev
Multi layer perceptron extension for ROOT - development files
Libroot-montecarlo-vmc-dev
Virtual Monte-Carlo library for ROOT - development files
Libroot-tmva-dev
Toolkit for multivariate data analysis - development files
Libscalapack-mpi-dev
Scalable Linear Algebra Package - Dev files for MPI
Libsis-jhdf5-java
easy-to-use HDF library for Java
Libssm-dev
macromolecular superposition library - development files
Libsymspg-dev
C library for crystal symmetry determination (development files)
Libxc-dev
Library of Exchange-Correlation Functionals (development files)
Netcdf-doc
Documentation for NetCDF
Pyfai
Fast Azimuthal Integration scripts
Python3-binoculars
Surface X-ray diffraction 2D detector data reduction - Python3
Python3-fabio
I/O library for images produced by 2D X-ray detector - Python3
Python3-gpyfft
Wrapper for the OpenCL FFT library clFFT (Python 3)
Python3-periodictable
Extensible periodic table of the elements (Python 3)
Python3-pycodcif
error-correcting CIF parser - Python3 bindings
Python3-sasmodels
Theoretical models for small angle scattering (Python 3)
R-cran-rnetcdf
GNU R package that provides an R interface to NetCDF datasets
Root-system
metapackage to install all ROOT packages
Scalapack-doc
Scalable Linear Algebra Package Documentation
Science-mathematics-dev
Debian Science Mathematics-dev packages

Official Debian packages with lower relevance

Libfeel++-dev
A library for the finite element method
Libfftw3-doc
Documentation for fftw version 3
Oce-draw
OpenCASCADE Community Edition CAE platform shared library
Python3-h5py
general-purpose Python interface to hdf5
Python3-netcdf4
Python 3 interface to the netCDF4 (network Common Data Form) library

Debian packages in contrib or non-free

Gsl-doc-info
GNU Scientific Library (GSL) Reference Manual in info
Gsl-doc-pdf
GNU Scientific Library (GSL) Reference Manual in pdf
Gsl-ref-html
GNU Scientific Library (GSL) Reference Manual in html
Gsl-ref-psdoc
GNU Scientific Library (GSL) Reference Manual in postscript

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev
Basic Linear Algebra Subroutines 3, static library

No known packages available

Libpspio-dev
Library to read and write pseudopotentials
Wannier90-1-dev
Maximally Localized Wannier Functions - Development files

Cognitive neuroscience - Debian Science packages for Cognitive Neuroscience

This metapackage will install Debian packages which might be useful for scientists doing cognitive neuroscience research. This comprises the full research process from conducting psychophysical experiments, over data acquisition and analysis, to visualization and typesetting of scientific results.

The selection of packages is targeting the application of analysis techniques. Methods developers are referred to the science-statistics, science-imageanalysis, science-numericalcomputation, med-imaging, and med-imaging-dev metapackages for a variety of additional software that might be useful in the context of cognitive neuroscience.

Official Debian packages with high relevance

Amide
software for Medical Imaging
Caret
Computerized Anatomical Reconstruction and Editing Toolkit
Dicom3tools
DICOM medical image files manipulation and conversion tools
Dicomnifti
converts DICOM files into the NIfTI format
Fslview
viewer for (f)MRI and DTI data
Itksnap
semi-automatic segmentation of structures in 3D images
Lipsia
analysis suite for MRI and fMRI data
Medcon
Medical Image (DICOM, ECAT, ...) conversion tool
Minc-tools
MNI medical image format tools
Mriconvert
medical image file conversion utility
Mricron
magnetic resonance image conversion, viewing and analysis
Nifti-bin
tools shipped with the NIfTI library
Nifti2dicom
convert 3D medical images to DICOM 2D series
Openmeeg-tools
openmeeg library -- command line tools
Openwalnut-qt4
Multi-modal medical and brain data visualization tool.
Praat
program for speech analysis and synthesis
Psignifit
Fitting and testing hypotheses about psychometric functions
Python3-nibabel
Python3 bindings to various neuroimaging data formats
Python3-pydicom
DICOM medical file reading and writing (Python 3)
Python3-statsmodels
Python3 module for the estimation of statistical models
Qnifti2dicom
convert 3D medical images to DICOM 2D series (gui)
Slicer
software package for visualization and image analysis - main application
Voxbo
processing, statistical analysis, and display of brain imaging data
Xmedcon
Medical Image (DICOM, ECAT, ...) conversion tool (GUI)

Official Debian packages with lower relevance

Connectomeviewer
Interactive Analysis and Visualization for MR Connectomics
Science-psychophysics
Debian Science packages for Psychophysics
Science-typesetting
Debian Science typesetting packages

Debian packages in contrib or non-free

Fsl
transitional dummy package

Packaging has started and developers might try the packaging code in VCS

Bioimagesuite
integrated image analysis software suite
Debruijn
De Bruijn cycle generator
Freesurfer
analysis and visualization of functional brain imaging data
Xnat
platform for data management and productivity tasks in neuroimaging

Unofficial packages built by somebody else

Eeglab
toolbox for processing and visualization of electrophysiological data
Mni-autoreg
MNI average brain (305 MRI) stereotaxic registration model
Mni-n3
MNI Non-parametric Non-uniformity Normalization

No known packages available but some record of interest (WNPP bug)

Fieldtrip
toolbox for MEG and EEG analysis
Pysurfer
visualize Freesurfer's data in Python
Spm8
analysis of brain imaging data sequences

No known packages available

Brainvisa
image processing factory for MR images
Hid
database management system for clinical imaging
Iqr
large-scale multi-level neuronal systems simulator

Neuroscience datasets - Debian Science packages for Neuroscience Datasets

This metapackage will install Debian packages that provide neuroscientific datasets. These datasets can be useful as common data files for applications (e.g. stereotaxic atlases), as example data for online tutorials or teaching, and as input data for analysis algorithms in demonstrations or test suites.

Packaging has started and developers might try the packaging code in VCS

Fsl-bangor-cerebellar-atlas
probabilistic atlas of the human cerebellum
Fsl-harvard-oxford-atlases
probabilistic atlas of human cortical brain areas (lateralized)
Fsl-jhu-dti-whitematter-atlas
human brain white-matter atlas
Fsl-juelich-histological-atlas
brain atlas based on cyto- and myelo-architectonic segmentations
Fsl-mni-structural-atlas
hand-segmented single-subject human brain atlas
Fsl-oxford-thalamic-connectivity-atlas
probabilistic brain atlas of thalamic white-matter connectivity
Fsl-talairach-daemon-atlas
structural anatomy labels of the Talairach atlas
Haxby2001-faceobject
face and object processing in ventral temporal cortex (fMRI)
Mclaren-rhesus-macaque-atlas
MRI-based brain atlas of the rhesus macaque monkey
Mni-colin27-nifti
Talairach stereotaxic space template
Sri24-atlas
MRI-based brain atlas of normal adult human brain anatomy

Unofficial packages built by somebody else

Mni-icbm152-nlin-2009
MNI stereotaxic space human brain template

Modeling of neural systems - Debian Science packages for modeling of neural systems

This metapackage will install Debian packages which might be useful for scientists interested in modeling of real neural systems at different levels (from single neuron to complex networks).

The selection of packages is targeting the application of simulation techniques. Methods developers are referred to the science-statistics, science-imageanalysis, science-numericalcomputation, med-imaging, and med-imaging-dev metapackages for a variety of additional software that might be useful for neuroscience research.

Official Debian packages with high relevance

Cnrun
NeuroML-capable neuronal network simulator
Neuron
Simulation environment for computational models of neurons

Official Debian packages with lower relevance

Xppaut
Phase Plane Plus Auto: Solves many kinds of equations

Debian packages in experimental

Python3-brian
simulator for spiking neural networks

Packaging has started and developers might try the packaging code in VCS

Nest
A simulator for networks of spiking neurons

No known packages available but some record of interest (WNPP bug)

Pcsim
simulator of heterogeneous networks of neurons and synapses

No known packages available

Invt
iLab Neuromorphic Vision C++ Toolkit
Moose
multiscale simulation environment for neuroscience

Numerical computation - Debian Science Numerical Computation packages

This metapackage will install Debian Science packages useful for numerical computation. The packages provide an array oriented calculation and visualisation system for scientific computing and data analysis. These packages are similar to commercial systems such as Matlab and IDL.

Official Debian packages with high relevance

Admesh
Tool for processing triangulated solid meshes. Binary
Algotutor
program for observing the intermediate steps of algorithm
Calculix-ccx
Three-Dimensional Structural Finite Element Program
Calculix-cgx
Calculix cgx is a 3-dimensional pre- and post-processor for fem
Coinor-cbc
Coin-or branch-and-cut mixed integer programming solver
Coinor-clp
Coin-or linear programming solver
Coinor-symphony
COIN-OR solver for mixed-integer linear programs
Esys-particle
Software for particle-based numerical modelling (MPI version)
Freemat
mathematics framework (mostly matlab compatible)
Gnudatalanguage
Free IDL compatible incremental compiler
Iep
transitional dummy package for IEP
Ipython3
Enhanced interactive Python 3 shell
Julia
high-performance programming language for technical computing
Lammps
Molecular Dynamics Simulator
Libadolc-dev
ADOLC development libs and headers
Libarrayfire-unified-dev
Development files for ArrayFire (unified backend)
Libceres-dev
nonlinear least squares minimizer (development files)
Libclblas-dev
development files for clBLAS
Libclfft-dev
development files for clFFT
Libclsparse-dev
development files for clSPARSE
Libcolpack-dev
Specialized graph vertex coloring library, development files
Libdune-grid-dev
toolbox for solving PDEs -- grid interface (development files)
Libopengm-dev
C++ template library for discrete factor graph models
Libppl-dev
Parma Polyhedra Library (development)
Libqsopt-ex-dev
Exact linear programming solver -- development files
Librsb-dev
recursive sparse blocks matrix computations library (development)
Libsuitesparse-dev
libraries for sparse matrices computations (development files)
Liggghts
Open Source DEM Particle Simulation Software.
Metis
Serial Graph Partitioning and Fill-reducing Matrix Ordering. Binaries
Octave
GNU Octave language for numerical computations
Pdl
perl data language: Perl extensions for numerics
Psurface
piecewise linear bijections between triangulated surfaces -- utilities
Python3-arrayfire
ArrayFire bindings for Python 3
Python3-bitstring
Python module for manipulation of binary data (Python 3)
Python3-deap
Distributed Evolutionary Algorithms in Python3
Python3-escript
Escript/Finley finite elements Python3 system (with OpenMP)
Python3-escript-mpi
Escript/Finley finite elements Python3 system (OpenMP + MPI)
Python3-guiqwt
efficient 2D data-plotting library - Python 3
Python3-lmfit
Least-Squares Minimization with Constraints (Python 3)
Python3-matplotlib
Python based plotting system in a style similar to Matlab (Python 3)
Python3-numpy
Fast array facility to the Python 3 language
Python3-pysph
open source framework for Smoothed Particle Hydrodynamics
Python3-scipy
scientific tools for Python 3
Python3-sfepy
Simple Finite Elements in Python
Python3-sparse
multidimensional sparse arrays for Python
Python3-tables
hierarchical database for Python3 based on HDF5
Python3-theano
CPU/GPU math expression compiler for Python 3
Python3-woo
Discrete dynamic compuations, esp. granular mechanics (python 3)
Python3-xarray
N-D labeled arrays and datasets in Python 3
Pyzo
interactive editor for scientific Python
Qsopt-ex
Exact linear programming solver
R-base
GNU R statistical computation and graphics system
R-cran-nleqslv
GNU R package for solving systems of nonlinear equations
Scilab
Scientific software package for numerical computations
Scilab-ann
Scilab module for artificial neural networks
Scilab-scimax
Symbolic computations for Scilab based on Maxima
Spyder
Python IDE for scientists
Toulbar2
Exact combinatorial optimization for Graphical Models
Vitables
graphical tool to browse and edit PyTables and HDF5 files
Yade
Platform for discrete element modeling
Yorick
interpreted language and scientific graphics

Official Debian packages with lower relevance

Calculix-ccx-doc
Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-ccx-test
Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-cgx-examples
Example files for Calculix GraphiX
Ceres-solver-doc
documentation for ceres-solver
Coinor-libcoinmp-dev
Simple C API for COIN-OR Solvers Clp and Cbc -- development
Evolver-nox
Surface Evolver - with no X support
Evolver-ogl
Surface Evolver - with OpenGL display
Hpcc
HPC Challenge benchmark
Libcneartree-dev
Library and headers for solving the Nearest Neighbor Problem
Libpsurface-dev
piecewise linear bijections between triangulated surfaces -- development files
Libquantum-dev
library for the simulation of a quantum computer (development files)
Libscirenderer-java
Java rendering library based on JOGL
Libsundials-serial-dev
SUNDIALS development files
Python3-agate
data analysis library optimized for human readability
Python3-agatedbf
support for dbf files in agate
Python3-agateexcel
support for Excel files in agate
Python3-agatesql
support for SQL read/write in agate
Python3-bcolz
high performant compressed data container based on NumPy (Python 3)
Python3-compyle
Execute a subset of Python on HPC platforms
Python3-cyarray
Fast, typed, resizable, Cython array
Python3-dbfread
read DBF Files with Python
Python3-leather
charting library for Python
Python3-numcodecs
buffer compression and transformation codecs for Python
Python3-spyder-line-profiler
line profiling plugin for the Spyder IDE
Python3-spyder-memory-profiler
memory profiling plugin for the Spyder IDE
Python3-spyder-reports
plugin to render scientific reports within the Spyder IDE
Python3-spyder-unittest
plugin to run tests within the Spyder IDE
Python3-zarr
chunked, compressed, N-dimensional arrays for Python
Scilab-jims
Binds Java from the Scilab engine
Theano-doc
CPU/GPU math expression compiler for Python (docs)

Debian packages in contrib or non-free

Libsuitesparse-metis-dev
collection of libraries for computations for sparse matrices
Matlab-support
distro integration for local MATLAB installations
Metis-edf
Family of Multilevel Partitioning Algorithms

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev
Basic Linear Algebra Subroutines 3, static library
Libgismo-dev
Geometry plus simulatiom modules development files
Python3-pydap
implementation of the Data Access Protocol in Python
Xtensor-dev
multi-dimensional arrays with broadcasting and lazy computing
Xtensor-python-dev
Python bindings for the xtensor library

Physics - Debian Science Physics packages

This metapackage will install Debian Science packages related to Physics. You might also be interested in the debtag field::physics and, depending on your focus, in education-physics metapackage.

Official Debian packages with high relevance

Abinit
package for electronic structure calculations
Axiom
General purpose computer algebra system: main binary and modules
Cadabra
field-theory motivated computer algebra system
Cernlib
CERNLIB data analysis suite - general use metapackage
Cp2k
Ab Initio Molecular Dynamics
Drawxtl
crystal structure viewer
Etsf-io
Binary tools to check, merge and read ETSF files
Feynmf
set of LaTeX macros for creating Feynman diagrams
Fityk
general-purpose nonlinear curve fitting and data analysis
Geant321
[Physics] Particle detector description and simulation tool
Gerris
Fluid Flow Solver
Ghkl
diffractometer computation control application
Gpaw
DFT and beyond within the projector-augmented wave method
Gpiv
GUI program for Particle Image Velocimetry
Gpivtools
command line programs for Particle Image Velocimetry
Gwyddion
Scanning Probe Microscopy visualization and analysis tool
Libroot-math-mlp-dev
Multi layer perceptron extension for ROOT - development files
Libroot-montecarlo-vmc-dev
Virtual Monte-Carlo library for ROOT - development files
Libroot-tmva-dev
Toolkit for multivariate data analysis - development files
Maxima
Computer algebra system -- base system
Meshlab
System for processing and editing triangular meshes
Mpqc
Massively Parallel Quantum Chemistry Program
Oce-draw
OpenCASCADE Community Edition CAE platform shared library
Openfoam
Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
Openmx
package for nano-scale material simulations
Opticalraytracer
Virtual lens/mirror design workshop
Paw
Physics Analysis Workstation - a graphical analysis program
Paw++
Physics Analysis Workstation (Lesstif-enhanced version)
Psi3
Quantum Chemical Program Suite
Pyfr
flux reconstruction in Python
Pymca
Applications and toolkit for X-ray fluorescence analysis -- scripts
Python3-deap
Distributed Evolutionary Algorithms in Python3
Python3-sympy
Computer Algebra System (CAS) in Python (Python 3)
Quantum-espresso
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
Root-system
metapackage to install all ROOT packages
Science-electronics
Debian Science Electronics transitional package
Science-numericalcomputation
Debian Science Numerical Computation packages
Tessa
simulation of 3D optical systems with the FDTD method
Tessa-mpi
simulation of 3D optical systems using FDTD on MPI clusters
Toulbar2
Exact combinatorial optimization for Graphical Models
V-sim
Visualize atomic structures

Official Debian packages with lower relevance

Evolver-nox
Surface Evolver - with no X support
Evolver-ogl
Surface Evolver - with OpenGL display
Feel++-apps
A library for the finite element method
Openctm-tools
Tools for compression of 3D triangle meshes
Paw-demos
Physics Analysis Workstation examples and tests
Science-mathematics
Debian Science Mathematics packages
Science-statistics
Debian Science Statistics packages

Packaging has started and developers might try the packaging code in VCS

Fdmnes
calculates spectra of different spectroscopies
Geant4
toolkit for simulation of particle/nuclear physics in detectors

Unofficial packages built by somebody else

Octaviz
3D visualization system for Octave

No known packages available but some record of interest (WNPP bug)

Blzpack
library for solving large sparse eigenproblems
Clhep
Class Library for High Energy Physics
Gate
Geant4 Application for Emission Tomography

No known packages available

Espresso++
Extensible Simulation Package for Research on Soft matter
Jfreemesh
3D mesh library in Java
Spis
Software toolkit for spacecraft-plasma interactions modelling

Physics-dev - Debian Science Physics-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Mathematics.

You might also be interested in the science-physics metapackage.

Official Debian packages with high relevance

Fenics
Automated Solution of Differential Equations
Fftw-dev
library for computing Fast Fourier Transforms
Libasl-dev
development files for ASL
Libdeal.ii-dev
Differential Equations Analysis Library - development files
Libfeel++-dev
A library for the finite element method
Libfftw3-dev
Library for computing Fast Fourier Transforms - development
Libnfft3-dev
development files for the NFFT library
Libopenctm-dev
Library headers for compression of 3D triangle meshes
Libp4est-dev
Algorithms for Parallel Adaptive Mesh Refinement - development files
Libplb-dev
CFD solver based on the lattice Boltzmann method. Development files
Libxray-absorption-perl
x-ray absorption data for the elements
Libxray-scattering-perl
x-ray scattering data for the elements
Libxray-spacegroup-perl
symmetry operations for the crystal space groups
Pyfai
Fast Azimuthal Integration scripts
Python3-dolfin
Python interface for DOLFIN (Python 3)
Python3-gpyfft
Wrapper for the OpenCL FFT library clFFT (Python 3)
Python3-ltfatpy
Large Time-Frequency Toolbox (LTFAT) in Python
Python3-multipletau
multiple-tau algorithm for Python3/NumPy
Python3-pygalmesh
Python 3 frontend to CGAL's 3D mesh generators
Python3-pynfft
Python bindings for the NFFT3 library - Python 3
Python3-quantities
Library for computation of physical quantities with units, based on numpy
Sfftw-dev
library for computing Fast Fourier Transforms
Trilinos-all-dev
object-oriented framework for large-scale problems - development files (ALL)

Debian packages in contrib or non-free

Libtriangle-dev
High-quality 2-D mesh generator development files

Presentation - Debian Science generic tools for presentations

This metapackage will install Debian Science some packages which are useful for doing presentations for instance on scientific conferences.

Official Debian packages with high relevance

Dspdfviewer
Dual-Screen PDF Viewer for LaTeX-beamer
Pdf-presenter-console
multi-monitor presentation tool (ala Keynote) for PDF files
Texlive-latex-extra
TeX Live: LaTeX additional packages
Texlive-publishers
TeX Live: Publisher styles, theses, etc.
Zathura
document viewer with a minimalistic interface

Psychophysics - Debian Science packages for Psychophysics

This metapackage will install Debian packages which might be useful for carrying out any experiment relating physical stimuli and their psychological effects.

The selection of packages is targeting software for stimuli delivery. For additional software related to the analysis of the acquired data refer to science-neuroscience-cognitive, med-imaging depending on the domain of application. Additionally look into science-bci since those often provide a complete loop frameworks including stimuli delivery.

Official Debian packages with high relevance

Libfreenect-dev
library for accessing Kinect device -- development files
Octave-psychtoolbox-3
toolbox for vision research -- Octave bindings
Psychopy
environment for creating psychology stimuli in Python

Official Debian packages with lower relevance

Opensesame
graphical experiment builder for the social sciences
Science-neuroscience-cognitive
Debian Science packages for Cognitive Neuroscience

Packaging has started and developers might try the packaging code in VCS

Debruijn
De Bruijn cycle generator

Unofficial packages built by somebody else

Psytoolkit
programming and running psychological experiments

No known packages available but some record of interest (WNPP bug)

Pebl
platform for psychology experiments
Visionegg
Python library for 2D/3D visual stimulus generation

No known packages available

Nrec
neurological stimulation, data acquisition and experiment control
Psychlops
Tscope
C/C++ experiment programming library for cognitive scientists

Robotics - Debian Robotics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Robotics.

You might also be interested in the science-engineering metapackage.

Official Debian packages with high relevance

Aseba
Event-based framework for distributed mobile robots control
Choreonoid
Integrated robotics GUI environment
Gazebo9
transitional package
Liburdfdom-tools
URDF DOM - tools
Morse-simulator
Multi-OpenRobot Simulation Engine
Octomap-tools
Tools for 3D occupancy grid mapping
Octovis
Visualization tool for OctoMap
Orca
Scriptable screen reader
Robot-player
Networked server for robots and sensors
Ros-desktop
Robot OS desktop metapackage
Ros-desktop-full
Robot OS desktop-full metapackage
Ros-opencv-apps
opencv_apps Robot OS package - apps
Ros-perception
Python Robot OS perception metapackage
Ros-robot
Python Robot OS robot metapackage
Ros-robot-state-publisher
Robot OS robot_state_publisher
Ros-simulators
Python Robot OS simulators metapackage
Rtai
Real Time Application Interface
Xenomai-runtime
Xenomai runtime utilities

Official Debian packages with lower relevance

Arduino-mk
Program your Arduino from the command line
Gnuplot
Command-line driven interactive plotting program.
Libcoin-runtime
high-level 3D graphics kit - external data files
Octave
GNU Octave language for numerical computations
Ompl-demos
Open Motion Planning Library (OMPL) demos
Vtk7
Binaries for VTK7

Unofficial packages built by somebody else

Orocos-bfl
framework for inference in Dynamic Bayesian Networks
Orocos-ocl
Orocos Component Library
Orocos-rtt
Orocos Real-Time Toolkit

No known packages available but some record of interest (WNPP bug)

Openhrp
OpenHRP robotics simulator
Openrtm
OpenRTM robotics middleware
Pcl
Point Cloud Library
Solid
Software library for collision detection of geometric objects in 3D space.

No known packages available

D-collide
D-Collide is a real-time collision detection library aimed
Openrave
OpenRAVE robotics platform
Orocos-kdl
Kinematics and Dynamics Library
Roboop
synthesis, and simulation of robotic manipulator models
Rtnet
hard real-time network protocol stack

Robotics-dev - Debian Robotics development packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages that are relevant to develop applications for robotics.

Official Debian packages with high relevance

Libapriltag-dev
AprilTags Visual Fiducial System
Libccd-dev
Library for collision detection between convex shapes - dev files
Libcnoid-dev
Integrated robotics GUI environment - development files
Libcomedi-dev
Development library for Comedi
Libconsole-bridge-dev
console bridge - development files
Libcv-dev
Translation package for libcv-dev
Libfcl-dev
Flexible Collision Library - development files
Libgazebo9-dev
transitional package
Libignition-cmake-dev
Ignition Robotics CMake Library - Development files
Libignition-common-dev
Collection of useful code used by robotics apps - Metapackage
Libignition-fuel-tools1-dev
transitional package
Libignition-math2-dev
Ignition Robotics Math Library - Development files
Libignition-math4-dev
transitional package
Libignition-msgs-dev
Set of message definitions used by robotics apps - Dev files
Libignition-transport-dev
Ignition Robotics transport Library - Development files
Libkido-dev
transitional package
Liboctomap-dev
Octomap library development files
Libode-dev
Open Dynamics Engine - development files
Libompl-dev
Open Motion Planning Library (OMPL) development files
Libopenigtlink-dev
Open IGT Link is a simple network protocol - development
Liborocos-bfl-dev
Orocos Bayesian Filtering Library development files
Liborocos-kdl-dev
Kinematics and Dynamics Library development files
Libpcl-dev
Point Cloud Library - development files
Libroboptim-core-dev
numerical optimization library - development files
Libsdformat4-dev
Simulation Description Format (SDF) parser - Development files
Libsimbody-dev
SimTK multibody dynamics API - development files
Libslicot-dev
numerical algorithms from systems and control theory (static library)
Liburdfdom-dev
URDF DOM - development files
Liburdfdom-headers-dev
URDF DOM - header files
Libvisp-dev
development files for ViSP
Python3-catkin-lint
Check Robot OS catkin packages for common errors (transitional package)
Python3-comedilib
Python3 wrapper for Comedilib
Python3-tf2
Robot OS tf2 transform library - Python 3
Ros-desktop-dev
Robot OS desktop development metapackage
Ros-desktop-full-dev
Robot OS desktop-full development metapackage
Ros-desktop-full-lisp-dev
LISP Robot OS desktop-full development metapackage
Ros-desktop-full-python-dev
Python Robot OS desktop-full development metapackage
Ros-environment
Robot OS environment hooks
Ros-perception-dev
Robot OS perception development metapackage
Ros-simulators-dev
Robot OS simulators development metapackage

Official Debian packages with lower relevance

Visp-images-data
visual servoing library - dataset reference files

Simulations - Debian Science Simulation packages

This metapackage will install Debian Science packages that are used to do simulations in different fields of science.

Official Debian packages with high relevance

Calculix-ccx
Three-Dimensional Structural Finite Element Program
Calculix-cgx
Calculix cgx is a 3-dimensional pre- and post-processor for fem
Esys-particle
Software for particle-based numerical modelling (MPI version)
Gazebo9
transitional package
Getdp
general environment for the treatment of discrete problems
Lammps
Molecular Dynamics Simulator
Libceres-dev
nonlinear least squares minimizer (development files)
Libkim-api-v2-models
Models and model-drivers for KIM-API
Liggghts
Open Source DEM Particle Simulation Software.
Music-bin
Multi-Simulation Coordinator for MPI -- Utilities
Neuron
Simulation environment for computational models of neurons
Occt-draw
Open CASCADE Technology command interpreter and graphical test system
Occt-misc
OCCT CAE platform shared library miscellaneous files
Openfoam
Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
Python3-deap
Distributed Evolutionary Algorithms in Python3
Python3-escript
Escript/Finley finite elements Python3 system (with OpenMP)
Python3-escript-mpi
Escript/Finley finite elements Python3 system (OpenMP + MPI)
Python3-pysph
open source framework for Smoothed Particle Hydrodynamics
Python3-sfepy
Simple Finite Elements in Python
Python3-woo
Discrete dynamic compuations, esp. granular mechanics (python 3)
Radiance
Lighting Simulation and Rendering System
Sumo
Simulation of Urban MObility (SUMO)
Yade
Platform for discrete element modeling

Official Debian packages with lower relevance

Calculix-ccx-doc
Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-ccx-test
Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-cgx-examples
Example files for Calculix GraphiX
Ceres-solver-doc
documentation for ceres-solver
Libopensurgsim-dev
Free platform for surgical simulation - development

Packaging has started and developers might try the packaging code in VCS

Fdmnes
calculates spectra of different spectroscopies
Libgismo-dev
Geometry plus simulatiom modules development files

Social - Debian Science social sciences packages

This metapackage will install Debian Science packages useful for social sciences.

Official Debian packages with high relevance

Opensesame
graphical experiment builder for the social sciences

Statistics - Debian Science Statistics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to statistics. This task is a general task which might be useful for any scientific work. It depends from a lot of R packages as well as from other tools which are useful to do statistics. Moreover the Science Mathematics task is suggested to optionally install all mathematics related software.

Official Debian packages with high relevance

Apophenia-bin
Apophenia Statistical C Library -- binary package
Datamash
statistics tool for command-line interface
Elpa-ess
Emacs mode for statistical programming and data analysis
Littler
GNU R scripting and command-line front-end -- transition package
Psignifit
Fitting and testing hypotheses about psychometric functions
Pspp
Statistical analysis tool
Python3-bayespy
variational Bayesian inference tools for Python
Python3-openturns
Python3 front-end of OpenTURNS (aka TUI)
Python3-pandas
data structures for "relational" or "labeled" data
Python3-scipy
scientific tools for Python 3
Python3-statsmodels
Python3 module for the estimation of statistical models
R-cran-abind
GNU R abind multi-dimensional array combination function
R-cran-acepack
GNU R package for regression transformations
R-cran-afex
GNU R package for analyzing factorial experiments using ANOVA or mixed models
R-cran-amore
GNU R: A MORE flexible neural network package
R-cran-arm
Data Analysis Using Regression and Multilevel/Hierarchical Models
R-cran-bayesfactor
GNU R Bayes factors for t-tests, ANOVAs and contingency tables
R-cran-bayesm
GNU R package for Bayesian inference
R-cran-bms
GNU R package for Bayesian model averaging for linear models
R-cran-boot
GNU R package for bootstrapping functions from Davison and Hinkley
R-cran-bradleyterry2
GNU R package for using Bradley-Terry models
R-cran-ca
GNU R package for simple, multiple and joint correspondence analysis
R-cran-cairodevice
GNU R Cairo/Gtk2 device driver package
R-cran-car
GNU R Companion to Applied Regression by John Fox
R-cran-caret
GNU R package for classification and regression training
R-cran-chron
GNU R package for chronologically ordered objects
R-cran-cluster
GNU R package for cluster analysis by Rousseeuw et al
R-cran-coda
Output analysis and diagnostics for MCMC simulations in R
R-cran-codetools
GNU R package providing code analysis tools
R-cran-coin
GNU R package providing conditional inference procedures
R-cran-contfrac
GNU R package providing various utilities for evaluating continued fractions
R-cran-conting
GNU R package for Bayesian analysis of contingency tables
R-cran-corpcor
GNU R for Estimation of Covariance and Correlation -- corpcor
R-cran-date
GNU R package for date handling
R-cran-dbi
GNU R package providing a generic database interface
R-cran-deldir
GNU R Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
R-cran-desolve
GNU R package providing functions that solve initial value problems
R-cran-eco
GNU R routines for Bayesian ecological inference
R-cran-ecodist
GNU R package for dissimilarity-based ecological analysis
R-cran-effects
GNU R graphical and tabular effects display for glm models
R-cran-elliptic
GNU R package providing elliptic and related functions
R-cran-energy
GNU R package for energy statistics for distribution comparison
R-cran-erm
GNU R package for 'extended Rasch modelling'
R-cran-estimability
GNU R package providing tools for determining estimability of linear functions
R-cran-expm
GNU R Computation of the matrix exponential and related quantities
R-cran-fastcluster
Fast hierarchical clustering routines for GNU R
R-cran-fbasics
GNU R package for financial engineering -- fBasics
R-cran-fcopulae
GNU R package for financial engineering -- fCopulae
R-cran-fecofin
GNU R package for financial engineering -- fEcofin
R-cran-fextremes
GNU R package for financial engineering -- fExtremes
R-cran-fmultivar
GNU R package for financial engineering -- fMultivar
R-cran-foptions
GNU R package for financial engineering -- fOptions
R-cran-foreign
GNU R package to read/write data from other stat. systems
R-cran-fportfolio
GNU R package for financial engineering -- fPortfolio
R-cran-gam
Generalized Additive Models for R
R-cran-gdata
GNU R package with data manipulation tools by Greg Warnes et al
R-cran-geepack
Generalized Estimating Equation Package for R
R-cran-ggplot2
implementation of the Grammar of Graphics
R-cran-glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
R-cran-gmodels
GNU R package with tools for model fitting by Greg Warnes et al
R-cran-goftest
GNU R Classical Goodness-of-Fit Tests for Univariate Distributions
R-cran-gplots
GNU R package with tools for plotting data by Greg Warnes et al
R-cran-gregmisc
GNU R package with miscellaneous functions by Greg Warnes et al
R-cran-gtools
GNU R package with R programming tools by Greg Warnes et al
R-cran-hdf5
GNU R package interfacing the NCSA HDF5 library
R-cran-hmisc
GNU R miscellaneous functions by Frank Harrell
R-cran-hypergeo
GNU R package providing the Gaussian hypergeometric for complex numbers
R-cran-its
GNU R package for handling irregular time series
R-cran-kernsmooth
GNU R package for kernel smoothing and density estimation
R-cran-lattice
GNU R package for 'Trellis' graphics
R-cran-latticeextra
GNU R package of additional graphical displays based on lattice
R-cran-lavaan
GNU R package for latent variable analysis -- lavaan
R-cran-lhs
GNU R Latin Hypercube Samples
R-cran-lme4
GNU R package for linear mixed effects model fitting
R-cran-lmtest
GNU R package for diagnostic checking in linear models
R-cran-logspline
GNU R package providing routines for the logspline density estimation
R-cran-lsmeans
GNU R package providing least-squares means for various classes of models
R-cran-mapdata
GNU R support for producing geographic maps (supplemental data)
R-cran-mapproj
GNU R support for cartographic projections of map data
R-cran-maps
GNU R support for producing geographic maps
R-cran-maptree
GNU R mapping, pruning, and graphing tree models
R-cran-mass
GNU R package of Venables and Ripley's MASS
R-cran-matchit
GNU R package of nonparametric matching methods
R-cran-matrix
GNU R package of classes for dense and sparse matrices
R-cran-mcmcpack
R routines for Markov chain Monte Carlo model estimation
R-cran-mgcv
GNU R package for multiple parameter smoothing estimation
R-cran-misc3d
GNU R collection of 3d plot functions and rgl-based isosurfaces
R-cran-mnp
GNU R package for fitting multinomial probit (MNP) models
R-cran-modelmetrics
GNU R Rapid Calculation of Model Metrics
R-cran-modeltools
GNU R package providing a collection of tools to deal with statistical models
R-cran-msm
GNU R Multi-state Markov and hidden Markov models in continuous time
R-cran-multcomp
GNU R package for multiple comparison procedures
R-cran-mvnormtest
GNU R package for multivariate normality test
R-cran-mvtnorm
GNU R package to compute multivariate Normal and T distributions
R-cran-nlme
GNU R package for (non-)linear mixed effects models
R-cran-nmf
GNU R framework to perform non-negative matrix factorization
R-cran-pbapply
GNU R package providing progress bars for vectorized R functions
R-cran-pbivnorm
GNU R package for calculating probabilities from a bivariate normal CDF
R-cran-permute
R functions for generating restricted permutations of data
R-cran-pscl
GNU R package for discrete data models
R-cran-psy
GNU R procedures for psychometrics
R-cran-qtl
GNU R package for genetic marker linkage analysis
R-cran-quadprog
GNU R package for solving quadratic programming problems
R-cran-qvcalc
GNU R quasi variances for factor effects in statistical models
R-cran-randomfieldsutils
utilities for the simulation and analysis of random fields
R-cran-raschsampler
GNU R package for sampling binary matrices with fixed margins
R-cran-rcmdr
GNU R platform-independent basic-statistics GUI
R-cran-relimp
GNU R package for inference on relative importance of regressors
R-cran-reshape2
Flexibly reshape data: a reboot of the reshape package
R-cran-rggobi
GNU R package for the GGobi data visualization system
R-cran-rgl
GNU R package for three-dimensional visualisation using OpenGL
R-cran-rgtk2
GNU R binding for Gtk2
R-cran-rinside
GNU R package to embed R in C++ application
R-cran-rmpi
GNU R package interfacing MPI libraries for distributed computing
R-cran-rms
GNU R regression modeling strategies by Frank Harrell
R-cran-rmysql
GNU R package providing a DBI-compliant interface to MySQL
R-cran-rodbc
GNU R package for ODBC database access
R-cran-rpart
GNU R package for recursive partitioning and regression trees
R-cran-rpvm
GNU R package interfacing PVM libraries for distributed computing
R-cran-rquantlib
GNU R package interfacing the QuantLib finance library
R-cran-rsdmx
GNU R package for the Statistical Data and Metadata Exchange (SDMX) framework
R-cran-rserve
GNU R Rserve tcp/ip server and sample clients
R-cran-rsprng
GNU R interface to SPRNG (Scalable Parallel RNGs)
R-cran-sandwich
GNU R package for model-robust standard error estimates
R-cran-sem
GNU R functions for fitting structural equation models -- sem
R-cran-sm
GNU R package for kernel smoothing methods
R-cran-snow
GNU R package for 'simple network of workstations'
R-cran-spam
GNU R functions for sparse matrix algebra
R-cran-spatstat
GNU R Spatial Point Pattern analysis, model-fitting, simulation, tests
R-cran-statmod
GNU R package providing algorithms and functions for statistical modeling
R-cran-strucchange
GNU R package for structural change regression estimation
R-cran-survival
GNU R package for survival analysis
R-cran-teachingdemos
GNU R Demonstrations for teaching and learning
R-cran-timedate
GNU R package for financial engineering -- timeDate
R-cran-tkrplot
GNU R embedded Tk plotting device package
R-cran-tseries
GNU R package for time-series analysis and comp. finance
R-cran-vcd
GNU R Visualizing Categorical Data
R-cran-vcdextra
GNU R package providing extensions and additions to the vcd package
R-cran-vgam
GNU R package for estimating vector generalized additive models
R-cran-xml
GNU R package for XML parsing and generation
R-cran-zelig
GNU R package providing a unified front-end for estimating statistical models
R-cran-zoo
GNU R package for totally ordered indexed observations
R-recommended
GNU R collection of recommended packages [metapackage]
Rkward
KDE frontend to the R statistics language

Official Debian packages with lower relevance

Libapophenia2-dev
Apophenia Statistical C Library -- development package
Libtamuanova-dev
Development files for the TAMU ANOVA library
Node-shiny-server-client
browser library for connecting to Shiny Server
R-cran-bbmle
GNU R tools for general maximum likelihood estimation
R-cran-blockmodeling
Generalized and classical blockmodeling of valued networks
R-cran-brglm
GNU R package for bias reduction in binomial-response GLMs
R-cran-catools
GNU R package providing various utility functions
R-cran-ellipse
GNU R functions for drawing ellipses and ellipse-like confidence regions
R-cran-fastmatch
GNU R package for fast match replacement for repeated look-ups
R-cran-futile.logger
logging utility for GNU R
R-cran-futile.options
GNU R futile options management
R-cran-gnm
GNU R package for generalized nonlinear models
R-cran-igraph
GNU R network analysis and visualization
R-cran-irlba
GNU R fast truncated SVD, PCA and symmetric eigendecomposition
R-cran-lambda.r
GNU R modeling data with functional programming
R-cran-luminescence
GNU R comprehensive luminescence dating data analysis
R-cran-magrittr
GNU R forward-pipe operator
R-cran-minpack.lm
GNU R Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK
R-cran-mlmrev
GNU R Examples from Multilevel Modelling Software Review
R-cran-nnls
GNU R package for non-negative least squares (the Lawson-Hanson algorithm)
R-cran-princurve
fit a principal curve in arbitrary dimension
R-cran-r.oo
GNU R object-oriented programming with or without references
R-cran-r.utils
GNU R various programming utilities
R-cran-rngtools
GNU R package for random number generators
R-cran-spc
GNU R Statistical Process Control
Science-mathematics
Debian Science Mathematics packages

Packaging has started and developers might try the packaging code in VCS

Rstudio
GNU R IDE

Unofficial packages built by somebody else

R-cran-fcalendar
GNU R package for financial engineering -- fCalendar

Tools - Debian Science generic tools for scientific work

This task lists Debian Science some packages which are providing some generic tools for sciences and to enhance scientific work.

Note that there is no according metapackage created since the packages might be to different to make sense to install all on one machine.

Official Debian packages with high relevance

Hdf-compass
viewer for HDF5 and related formats
Openstereogram
Stereogram ("Magic Eye") generator with GUI
Python3-h5netcdf
netCDF4 support via h5py for Python 3
Python3-h5py
general-purpose Python interface to hdf5
Python3-hdf5storage
high-level utilities to read from and write to HDF5 (Python 3)
Python3-pybind11
pybind11 helper module for Python 3
Reprounzip
tool for reproducing scientific experiments (unpacker)
Reprozip
tool for reproducing scientific experiments (packer)
Science-workflow
workflow management systems useful for scientific research
Xoscope
digital oscilloscope

Official Debian packages with lower relevance

Libmemtailor-dev
C++ library of special purpose memory allocators (developer tools)
Libmrmpi-dev
Implements MapReduce operation on top of standard MPI message - development
Python3-pweave
scientific report generator for Python

Packaging has started and developers might try the packaging code in VCS

Python3-pydap
implementation of the Data Access Protocol in Python

Typesetting - Debian Science typesetting packages

This metapackage will install Debian Science packages related to typesetting. You might also be interested in the use::typesetting debtag.

Official Debian packages with high relevance

Auctex
integrated document editing environment for TeX etc.
Biber
Much-augmented BibTeX replacement for BibLaTeX users
Bibus
bibliographic database
Bibutils
interconvert various bibliographic data formats
Cb2bib
extract bibliographic references from various sources
Dia
Diagram editor
Diploma
Write scientific papers with Debian
Feynmf
set of LaTeX macros for creating Feynman diagrams
Gummi
simple LaTeX editor with live preview
Impose+
Postscript utilities for two-up printing, bbox, etc
Ipe
drawing editor for creating figures in PDF or PS formats
Ipe5toxml
converts Ipe5 figures to an XML file readable by Ipe
Jabref
graphical frontend to manage BibTeX and BibLaTeX databases
Jeuclid-mathviewer
Complete MathML rendering solution (Swing MathViewer)
Kbibtex
BibTeX editor for KDE
Kile
KDE Integrated LaTeX Environment
Latexdiff
utility to mark up significant differences between LaTeX files
Libjlatexmath-java
Implementation of LaTeX math mode wrote in Java
Lyx
document processor
Mlpost
OCaml interface to Metapost (command-line tool)
Pandoc
general markup converter
Pandoc-citeproc
Pandoc support for Citation Style Language - tools
Pybliographer
tool for manipulating bibliographic databases
Pybtex
BibTeX-compatible bibliography processor
Python3-pybtex-docutils
docutils backend for pybtex
Python3-sphinxcontrib.bibtex
Sphinx extension for BibTeX style citations
R-cran-knitr
GNU R package for dynamic report generation using Literate Programming
Referencer
GNOME Document Organiser
Sagetex
Embed Sage code and plots into LaTeX
Sketch
3D diagrams for TeX from scene description language
Texlive
TeX Live: A decent selection of the TeX Live packages
Texlive-bibtex-extra
TeX Live: BibTeX additional styles
Texlive-math-extra
TeX Live: Mathematics packages
Texlive-publishers
TeX Live: Publisher styles, theses, etc.
Texlive-science
TeX Live: Mathematics, natural sciences, computer science packages
Texmacs
WYSIWYG mathematical text editor using TeX fonts
Texmaker
cross-platform LaTeX editor
Texstudio
LaTeX Editor
Transfig
transitional dummy package for fig2dev
Vim-latexsuite
view, edit and compile LaTeX documents from within Vim
Xfig
Facility for Interactive Generation of figures under X11
Zotero-standalone
organize and share your research sources

Official Debian packages with lower relevance

Csv2latex
command-line CSV to LaTeX file converter
Libgtkmathview-bin
rendering engine for MathML documents
Libqtexengine-dev
Development files for the QTeXEngine library
Luasseq
TeX Live: transitional dummy package
Openoffice.org-dmaths
Formula editor improvements for LibreOffice
R-cran-gridbase
GNU R Integration of base and grid graphics
R-cran-highr
Syntax Highlighting for R Source Code
R-cran-scatterd3
D3 JavaScript scatterplot from GNU R
R-cran-shape
GNU R functions for plotting graphical shapes, colors
R-cran-xtable
GNU R coerce data to LaTeX and HTML tables
Svgtoipe
converts SVG figures to an XML file readable by Ipe
Tellico
Collection manager for books, videos, music, etc
Xul-ext-zotero
Firefox extension to organize and share your research sources

Unofficial packages built by somebody else

Pymarc
read, write and modify MARC bibliographic data

No known packages available but some record of interest (WNPP bug)

Quaneko
An index tool of TXT, PDF, DOC, HTML and others

No known packages available

Gpapers
bibliography management software

Viewing - Debian Science data visualisation packages

This metapackage will install Debian Science packages related to data visualization. You might also be interested in the use::viewing debtag.

Official Debian packages with high relevance

3depict
visualisation and analysis for single valued point data
Ctioga2
polymorphic plotting program
Feedgnuplot
Pipe-oriented frontend to Gnuplot
Fityk
general-purpose nonlinear curve fitting and data analysis
G3data
extract data from scanned graphs
Geg
GTK+ Equation Grapher
Gfsview
graphical viewer for Gerris simulation files
Giza-dev
Lightweight scientific plotting library (development files)
Gle-graphics
Graphics Layout Engine
Gmsh
Three-dimensional finite element mesh generator
Gnudatalanguage
Free IDL compatible incremental compiler
Gnuplot
Command-line driven interactive plotting program.
Grace
XY graphing and plotting tool
Graphviz
rich set of graph drawing tools
Gri
a language for scientific illustration
Gwyddion
Scanning Probe Microscopy visualization and analysis tool
Ifrit
powerful tool for visualizing 3-dimensional data sets
Imview
Image viewing and analysis application
Kst
scientific data plotting tool
Labplot
interactive graphing and analysis of scientific data
Libgnuplot-iostream-dev
C++ programming interface for gnuplot. Headers
Libqglviewer2
OpenGL 3D viewer library based on Qt - runtime library
Lybniz
mathematical function graph plotter
Mathgl
library for scientific graphs (utilities and examples)
Matlab2tikz
converter of Octave plots to TikZ figures (for integration into LaTeX)
Mayavi2
scientific visualization package for 2-D and 3-D data
Ovito
visualization and analysis tool for atomistic simulation data
Paraview
Parallel Visualization Application
Pdl
perl data language: Perl extensions for numerics
Plotdrop
minimal GNOME frontend to GNUPlot
Python3-gnuplot
Python interface to the gnuplot plotting program
Python3-guiqwt
efficient 2D data-plotting library - Python 3
Python3-pyqtgraph
Scientific Graphics and GUI Library for Python 3
Python3-seaborn
statistical visualization library for Python3
Pyxplot
data plotting program producing publication-quality output
Qtiplot
data analysis and scientific plotting
R-cran-sjplot
GNU R data visualization for statistics in social science
Rlplot
GUI application for generating publication quality graphs
Scidavis
application for scientific data analysis and visualization
Solvespace
Parametric 2d/3d CAD
Trend
general-purpose, efficient trend graph
Udav
library for scientific graphs (window interface)
Veusz
2D and 3D scientific plotting application with graphical interface
Vistrails
Science visualisation workflow toolkit
Yorick
interpreted language and scientific graphics

Official Debian packages with lower relevance

Circos
plotter for visualizing data
Circos-tools
plotter for visualizing data - helper utilities
Findimagedupes
Finds visually similar or duplicate images
Jeuclid-mathviewer
Complete MathML rendering solution (Swing MathViewer)
Libcoin-dev
high-level 3D graphics devkit with Open Inventor and VRML97 support
Libgrits-dev
Development files for grits
Libgtkmathview-bin
rendering engine for MathML documents
Libgts-bin
utility binaries for libgts
Libpuzzle-bin
quick similar image finder - runtime tool
Libqglviewer-dev
OpenGL 3D viewer library based on Qt4 - development files
Libsoqt520-dev
Qt5 GUI component toolkit for Inventor - development
Libvtk7-dev
VTK header files
Libvtk7-java
Visualization Toolkit - A high level 3D visualization library - java
Libvtk7-qt-dev
VTK header files, containing Qt files
Med-imaging
Debian Med image processing and visualization packages
Python3-matplotlib
Python based plotting system in a style similar to Matlab (Python 3)
Python3-pivy
Coin binding for Python 3
Python3-vtk7
Python bindings for VTK
R-cran-aplpack
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R and others
R-cran-colorspace
GNU R Color Space Manipulation
R-cran-ggplot2
implementation of the Grammar of Graphics
R-cran-labeling
GNU R Axis Labeling optimization
R-cran-plotrix
GNU R package providing various plotting functions
R-cran-qqman
R package for visualizing GWAS results using Q-Q and manhattan plots
R-cran-scales
Scale functions for visualization
R-cran-scatterplot3d
GNU R package for Visualizing Multivariate Data
R-cran-shape
GNU R functions for plotting graphical shapes, colors
R-cran-vioplot
GNU R toolbox for violin plots
Tcl-vtk7
Tcl bindings for VTK
Texlive-pictures
TeX Live: Graphics, pictures, diagrams
Vtk7-examples
VTK examples

Debian packages in contrib or non-free

Pgplot5
large subroutine library for plotting scientific data
Worldwind
3D Virtual Globe

Packaging has started and developers might try the packaging code in VCS

Cassandra
highly-scalable partitioned row store
Visit
interactive parallel visualization and graphical analysis tool

No known packages available but some record of interest (WNPP bug)

Pgfplots
TeX package to draw normal and/or logarithmic plots directly in TeX

Viewing-dev - Debian Science development of visualisation applications

This metapackage will install Debian Science packages related to the development of applications to visualise scientific data.

Official Debian packages with high relevance

Gnudatalanguage
Free IDL compatible incremental compiler
Inventor-dev
Open Inventor development files
Libchealpix-dev
HEALPix representation of spherical data - C development library
Libcoin-dev
high-level 3D graphics devkit with Open Inventor and VRML97 support
Libforge-dev
development files for forge
Libgl2ps-dev
Lib providing high quality vector output for OpenGL application, dev files
Libglbinding-dev
development files for glbinding
Libgli-dev
C++ image library for graphics software
Libglm-dev
C++ library for OpenGL GLSL type-based mathematics
Libglobjects-dev
development files for globjects
Libgnuplot-iostream-dev
C++ programming interface for gnuplot. Headers
Libgrits-dev
Development files for grits
Libgtkdatabox-dev
Gtk+ library to display large amounts of numerical data (development)
Libgtkdataboxmm-dev
C++ bindings for GtkDatabox - development files
Libgts-dev
development files for libgts
Liborigin2-dev
library for reading OriginLab Origin 7.5 project files (development)
Libplplot-dev
Scientific plotting library (development files)
Libqglviewer-dev
OpenGL 3D viewer library based on Qt4 - development files
Libqglviewer-dev-qt5
OpenGL 3D viewer library based on Qt5 - development files
Libqtexengine-dev
Development files for the QTeXEngine library
Libqwtplot3d-qt5-dev
3D plotting library based on Qt5/OpenGL (development)
Libslvs1-dev
SolveSpace geometric kernel (development files)
Libsoqt520-dev
Qt5 GUI component toolkit for Inventor - development
Libvtk7-dev
VTK header files
Libvtk7-java
Visualization Toolkit - A high level 3D visualization library - java
Libvtk7-qt-dev
VTK header files, containing Qt files
Pdl
perl data language: Perl extensions for numerics
Python3-gnuplot
Python interface to the gnuplot plotting program
Python3-gnuplotlib
Gnuplot-based plotter for numpy
Python3-matplotlib
Python based plotting system in a style similar to Matlab (Python 3)
Python3-matplotlib-venn
Python 3 plotting area-proportional two- and three-way Venn diagrams
Python3-pivy
Coin binding for Python 3
Python3-plplot-qt
Scientific plotting library (Python Qt GUI)
Python3-qwt
Pure Python implementation of Qwt - Python 3
Python3-qwt3d-qt5
Python bindings of the QwtPlot3D library
Python3-skimage
Python 3 modules for image processing
Python3-skimage-lib
Optimized low-level algorithms for Python 3 scikit-image
Python3-vispy
interactive visualization in Python 3
Python3-vtk7
Python bindings for VTK
Tcl-vtk7
Tcl bindings for VTK
Vtk7-examples
VTK examples

Official Debian packages with lower relevance

Libcollada-dom2.4-dp-dev
Transitional package

Workflow - workflow management systems useful for scientific research

This task lists some packages providing workflow management systems useful for scientific research.

Official Debian packages with high relevance

Coop-computing-tools
cooperative computing tools
Cwltool
Common Workflow Language reference implementation
Gearman
Distributed job queue
Gearman-tools
Tools for the Gearman distributed job queue
Make
utility for directing compilation
Pegasus-wms
Scientific workflow management system for HTCondor
Snakemake
pythonic workflow management system
Toil
cross-platform workflow engine

Official Debian packages with lower relevance

Libbenchmark-tools
Microbenchmark support library, tools and documentation