Tasks page

This is a list of the Tasks Debian Science is made of:

Table of contents

• Brain-computer interface
• Biology
• Chemistry
• Data acquisition
• Data acquisition development
• Data management
• Devices
• Distributed computing
• Economics
• Electrophysiology
• Engineering
• Engineering-dev
• Financial engineering
• Geography
• Geometry
• High energy physics
• High energy physics (devel)
• Image analysis
• Image analysis development
• Linguistics
• Logic
• Machine learning
• Mathematics
• Mathematics-dev
• Meteorology
• Meteorology-dev
• Nanoscale physics
• Nanoscale physics development
• Cognitive neuroscience
• Neuroscience datasets
• Modeling of neural systems
• Numerical computation
• Physics
• Physics-dev
• Presentation
• Psychophysics
• Robotics
• Robotics-dev
• Simulations
• Social
• Statistics
• Tools
• Typesetting
• Viewing
• Viewing-dev
• Workflow

Brain-computer interface - Debian Science Brain-computer interface packages

Debian Science packages for the design and use of brain-computer interface (BCI) -- direct communication pathway between a brain and an external device. BCIs are often aimed at assisting, augmenting or repairing human cognitive or sensory-motor functions.

The selection of packages is targeting the complete frameworks for the design of BCI systems. Often such systems rely on external presentation, data collection and analysis software which could be found in science-neuroscience-cognitive, science-dataacquisition, data-machine-learning metapackages.

Packaging has started and developers might try the packaging code in VCS

Emokit

Emotiv EPOC headset Python interface

Pybci

Brain Computer Interface module for Brain Vision Recorder

Pyff

Brain Computer Interface (BCI) framework

No known packages available but some record of interest (WNPP bug)

Openvibe

platform for the design, test and use of BCI

No known packages available

Bci2000

platform for brain-computer interface systems

Bcpy2000

platform for brain-computer interface systems

Biology - Debian Science Biology packages

This metapackage will install Debian Science packages related to Biology. You might also be interested in the field::biology debtag.

This metapackage makes use of the packages med-bio and med-bio-dev (for development of biological applications) which are maintained by Debian Med - another Debian Pure Blend. If you are a biologist you are most probably interested in the Debian Med project which deals with biology and medicine in much more detail then the more general Debian Science.

Official Debian packages with high relevance

Bauble

biodiversity collection manager software application

Critterding

Evolving Artificial Life

Med-bio

Debian Med bioinformatics packages

Nmodl

Code generation engine for the NEURON modeling language

Nrn-mod2c

NMODL to C converter for CoreNEURON

Official Debian packages with lower relevance

Libinterviews-dev

InterViews 3.1 for the NEURON simulator

Med-bio-dev

Debian Med packages for development of bioinformatics applications

Python3-nmodl

Python support for the NEURON modeling language engine

Siconos

modeling and simulation of nonsmooth dynamical systems (simulation runner tool)

Siconos-mechanics-tools

modeling and simulation of nonsmooth dynamical systems (mechanics tools)

Packaging has started and developers might try the packaging code in VCS

Genesis

general-purpose neural simulator

Chemistry - Debian Science Chemistry packages

This metapackage will install Debian Science packages related to Chemistry. You might also be interested in the field::chemistry debtag and, depending on your focus, in the education-chemistry metapackage.

Official Debian packages with high relevance

Adun.app

Molecular Simulator for GNUstep (GUI)

Apbs

Adaptive Poisson Boltzmann Solver

Atomes

atomic-scale 3D modeling toolbox

Avogadro

Molecular Graphics and Modelling System

Bkchem

Chemical structures editor

Bodr

Blue Obelisk Data Repository

Chemeq

Parser for chemical formula and equilibria

Chemical-mime-data

chemical MIME and file type support for desktops

Chemical-structures

web service providing molecular structures in open formats

Chemtool

chemical structures drawing program

Cp2k

Ab Initio Molecular Dynamics

Drawxtl

crystal structure viewer

Easychem

Draw high-quality molecules and 2D chemical formulas

Feff85exafs

Open Source theoretical EXAFS calculations

Gabedit

graphical user interface to Ab Initio packages

Galculator

scientific calculator

Gamgi

General Atomistic Modelling Graphic Interface (GAMGI)

Garlic

visualization program for biomolecules

Gausssum

parse and display Gaussian, GAMESS, and etc's output

Gchempaint

2D chemical structures editor for the GNOME2 desktop

Gcrystal

lightweight crystal structures visualizer

Gcu-bin

GNOME chemistry utils (helper applications)

Gcu-plugin

GNOME chemistry utils (browser plugin)

Gdis

molecular and crystal model viewer

Gdpc

visualiser of molecular dynamic simulations

Gelemental

Periodic Table viewer

Ghemical

GNOME molecular modelling environment

Gperiodic

periodic table application

Gromacs

Molecular dynamics simulator, with building and analysis tools

Gromacs-mpich

Molecular dynamics sim, binaries for MPICH parallelization

Gromacs-openmpi

Molecular dynamics sim, binaries for OpenMPI parallelization

Jmol

Molecular Viewer

Kalzium

periodic table and chemistry tools

Katomic

atomix puzzle game

Libcdk-java

Chemistry Development Kit (CDK) Java libraries

Mmass

Mass spectrometry tool for proteomics

Mmass-modules

Mass spectrometry tool for proteomics - extension modules

Mopac7-bin

Semi-empirical Quantum Chemistry Library (binaries)

Mpqc

Massively Parallel Quantum Chemistry Program

Mpqc-support

Massively Parallel Quantum Chemistry Program (support tools)

Msxpertsuite

mass spectrometry software suite - metapackage

Openbabel

Chemical toolbox utilities (cli)

Openfoam

Open source toolbox for Computational Fluid Dynamics (CFD) - binaries

Pdb2pqr

Preparation of protein structures for electrostatics calculations

Psi3

Quantum Chemical Program Suite

Pyfai

Fast Azimuthal Integration scripts

Pymol

Molecular Graphics System

Python3-mpiplus

Python GPU framework for alchemical free energy calculations (Python 3)

Python3-openbabel

Chemical toolbox library (Python bindings)

Python3-pymzml

mzML mass spectrometric data parsing (Python 3.x)

Qutemol

interactive visualization of macromolecules

Rasmol

visualization of biological macromolecules

Tandem-mass

mass spectrometry software for protein identification

V-sim

Visualize atomic structures

Viewmol

graphical front end for computational chemistry programs

Xbs

3-d models and movies of molecules

Xdrawchem

Chemical structures and reactions editor

Xmakemol

program for visualizing atomic and molecular systems

Xmakemol-gl

program for visualizing atomic and molecular systems (OpenGL)

Official Debian packages with lower relevance

Gdpc-examples

example files for the gdpc program

Libcoordgen-dev

2D coordinate generation for chemical compounds - header files

Libmaeparser-dev

Development files to parse Schrödinger Maestro files

Libschroedinger-coordgenlibs-dev

2D coordinate generation for chemical compounds - header files

Python-pymzml-doc

mzML mass spectrometric data parsing - documentation

Python3-amp

Atomistic Machine-learning Package (python 3)

Python3-periodictable

Extensible periodic table of the elements (Python 3)

Refmac-dictionary

dictionary for macromolecular refinement and model building

Packaging has started and developers might try the packaging code in VCS

Fdmnes

calculates spectra of different spectroscopies

Molden

processing program of molecular and electronic structure

Molekel

Advanced Interactive 3D-Graphics for Molecular Sciences

Tinker

Software Tools for Molecular Design

No known packages available but some record of interest (WNPP bug)

Libegad

rational protein design library

Libint

Evaluate the integrals in modern atomic and molecular theory

No known packages available

Openchrom

process chromatographic and mass spectrometric data

Data acquisition - Debian Science data acquisition packages

This metapackage will install Debian Science packages related to data acquisition. This might be used in several sciences (as for instance science-viewing and science-typesetting).

Official Debian packages with high relevance

Clickhouse-tools

column-oriented database system (tools)

Csvkit

command-line tools for working with CSV

Engauge-digitizer

interactively extracts numbers from bitmap graphs or maps

Filo

FILe and stream Operations

G3data

??? missing short description for package g3data :-(

Ghkl

diffractometer computation control application

Jaaa

audio signal generator and spectrum analyser

Libfreenect-dev

library for accessing Kinect device -- development files

Libgetdata-tools

library to read/write dirfile data - extra tools

Lxi-tools

LAN eXtensions for Instrumentation (LXI) software interface

Netcdf-bin

Programs for reading and writing NetCDF files

Open3d-gui

Transitional dummy package for open3d-viewer

Open3d-tools

Library for 3D data processing - tools

Python3-pyvisa

Python 3 bindings for Virtual Instrument Software Architecture

Python3-sardana

instrument control and data acquisition system - library

Segyio-bin

SEG-Y read/write library for seismic processing (shell utilities)

Vnlog

Toolkit to read/write/manipulate whitespace-separated ASCII logs

Xlsx2csv

convert xlsx files to csv format

Xyscan

data thief for scientists

Official Debian packages with lower relevance

Binoculars

Surface X-ray diffraction 2D detector data reduction

Gnudatalanguage

Free IDL compatible incremental compiler

Gpsd

Global Positioning System - daemon

Python3-pytango

transitional dummy package for python3-tango

Python3-streamz

build pipelines to manage continuous streams of data

Python3-taurus

Framework for scientific/industrial CLIs and GUIs - Python3

Rt-tests

Test programs for rt kernels

Tango-accesscontrol

TANGO distributed control system - accesscontrol server

Tango-db

TANGO distributed control system - database server

Tango-starter

TANGO distributed control system - starter server

Xenomai-runtime

Xenomai runtime utilities

Packaging has started and developers might try the packaging code in VCS

Qtdmm

GUI for digital multimeter

Unofficial packages built by somebody else

Epics

Experimental Physics and Industrial Control System

Linux-image-2.6-rt

Stock Linux kernel with RT-Preempt patch

Mx-dataacquisition

data acquisition and control system

No known packages available but some record of interest (WNPP bug)

Opendap

Java Network Data Access Protocol

No known packages available

Hart

toolbox to generate DAQ Scicos-blocks for hardware

Plot-digitizer

digitize scanned plots of functional data

Data acquisition development - Debian Science data acquisition development packages

This metapackage will install Debian Science packages which are helpful to develop applications related to data acquisition. This might be used in several sciences.

Official Debian packages with high relevance

Libgetdata-dev

library to read/write dirfile data - devel files (C, C++, F77, F95)

Libgetdata-perl

library to read/write dirfile data - perl bindings

Liblog4tango-dev

??? missing short description for package liblog4tango-dev :-(

Liblxi-dev

LAN eXtensions for Instrumentation (LXI) software interface

Libopen3d-dev

Library for 3D data processing - development headers

Libopenrefine-arithcode-java

Java implementation of arithmetic coding and PPM compression

Libopenrefine-vicino-java

near-neighbor search tool for Java

Libsdsl-dev

succinct data structure library - development files

Libtango-dev

TANGO distributed control system - development library

Libvnlog-dev

Toolkit to read/write/manipulate whitespace-separated ASCII logs

Libvnlog-perl

Toolkit to read/write/manipulate whitespace-separated ASCII logs

Mseed2sac

Convert MiniSEED time series data to SAC

Python3-aws-xray-sdk

AWS X-Ray SDK for Python 3

Python3-csvkit

public modules for csvkit (Python 3)

Python3-datacache

helpers for transparently downloading datasets

Python3-guidata

dataset manipulation GUI generator - Python 3

Python3-intake

lightweight package for finding and investigating data

Python3-open3d

Library for 3D data processing - Python 3 bindings

Python3-pygetdata

library to read/write dirfile data - Python3 bindings

Python3-pymeasure

scientific measurement library for Python

Python3-segyio

SEG-Y read/write library for seismic processing (python3 bindings)

Python3-tango

API for the TANGO control system (Python 3)

Python3-trx-python

implementation of the trx file-format for tractography data

Python3-vnlog

Toolkit to read/write/manipulate whitespace-separated ASCII logs

Python3-xrayutilities

X-rays data reduction and analysis (Python 3)

Official Debian packages with lower relevance

Libbcm2835-dev

access to GPIO and other IO functions on the Broadcom BCM 2835 chip

Python3-asciitree

Draw tree structures using (ASCII or Unicode) characters

R-cran-mi

GNU R package for Missing Data Imputation and Model Checking -- mi

R-cran-ncdf4

GNU R interface to Unidata netCDF format data files

Data management - Debian Science Data Management packages

This metapackage will install packages to assist with data management tasks, such as obtaining data from remote resources, keeping data under version control, etc.

Official Debian packages with high relevance

Datalad

data files management and distribution platform

Datalad-container

DataLad extension for working with containerized environments

Git-annex

manage files with git, without checking their contents into git

Hdf5-filter-plugin

external filters for HDF5: LZ4, BZip2, Bitshuffle

Hdf5-filter-plugin-blosc-serial

blocking, shuffling and lossless compression library

Hdf5-filter-plugin-zfp-serial

Compression plugin for the HDF5 library using ZFP compression

Nexus-tools

NeXus scientific data file format - applications

Plfit

fitting power-law distributions to empirical data -- interfaces

Python3-jdata

JData encoder/decoder for python 3

Python3-mdp

Modular toolkit for Data Processing

Python3-nxs

NeXus scientific data file format - Python 3 binding

Python3-pyzoltan

Wrapper for the Zoltan data management library

Virtuoso-opensource

high-performance database

Visidata

rapidly explore columnar data in the terminal

Official Debian packages with lower relevance

Libnexus-dev

NeXus scientific data file format - development libraries

Libnexus-java

NeXus scientific data file format - java libraries

Libplfit-dev

fitting power-law distributions to empirical data -- development

Python3-openpyxl

Python 3 module to read/write OpenXML xlsx/xlsm files

Python3-opentsne

t-Distributed Stochastic Neighbor Embedding algorithm

Python3-plfit

fitting power-law distributions to empirical data -- Python

Devices - Debian Science specific devices support

This task lists Debian Science packages which are dedicated to specific devices that are typically used in sciences. This might reach from scientific calculators or specific measurement devices.

Note that there is no according metapackage created since the packages might be to different to make sense to install all on one machine.

Official Debian packages with high relevance

Bossa

Atmel SAM ARM microcontroller flash programming GUI

Bossa-cli

Atmel SAM ARM microcontroller flash programming utility

Expeyes

hardware & software framework for developing science experiments

Gfm

Texas Instruments hand-helds file manipulation program for X

Tiemu

Texas Instruments calculators emulator (without GDB)

Tilem

GTK+ TI Z80 calculator emulator

Tilp2

Texas Instruments hand-helds <-> PC communication program for X

Official Debian packages with lower relevance

Libticables-dev

Texas Instruments link cables library [development files]

Libticalcs-dev

Texas Instruments calculator communication library [development files]

Libticonv-dev

Texas Instruments calculators charsets library [development files]

Libtifiles-dev

Texas Instruments calculator files library [development files]

Distributed computing - Debian Science Distributed Computing packages

This metapackage will install Debian Science packages useful for various types of distributed computing, such as grid-, cloud-, cluster- and parallel-computing.

Official Debian packages with high relevance

Dmtcp

Checkpoint/Restart functionality for Linux processes

Environment-modules

Modular system for handling environment variables

Globus-core

Globus Toolkit - Globus Core - Transitional Package

Gridengine-client

Utilities for Grid Engine queue management

Gridengine-exec

Distributed resource management - Execution Server

Gridengine-master

Distributed resource management - Master Server

Gridengine-qmon

Graphical utilities for Grid Engine queue management

Htcondor

transitional dummy package

Ipython3

Enhanced interactive Python 3 shell

Mpich

Implementation of the MPI Message Passing Interface standard

Mpich2python

MPI-enhanced Python interpreter (MPICH2 based version)

Nordugrid-arc-client

ARC command line clients

Openmpi-bin

high performance message passing library -- binaries

Openmpipython

MPI-enhanced Python interpreter (OpenMPI based version)

Python3-scoop

Python3 library for concurrent parallel programming

Official Debian packages with lower relevance

Coop-computing-tools

cooperative computing tools

Hpcc

HPC Challenge benchmark

Octave-mpi

Octave toolbox for parallel computing using MPI

Python3-mpi4py

bindings of the Message Passing Interface (MPI) standard

No known packages available

Psom

pipeline system for Octave and Matlab

Economics - Debian Science Economics packages

This metapackage will install Debian Science packages useful for economics and econometrics. It includes user-friendly programs for simulating and estimating macro-economic and micro-economic models. It also provides computing environments which can solve a wide range of problems typically encountered in economic research. These environments provide functionalities similar to those of popular non-free systems (such as MATLAB, Mathematica, Stata or SAS).

Official Debian packages with high relevance

Dynare

platform for handling a wide class of economic models

Gretl

GNU Regression, Econometric & Time-Series Library

Octave-econometrics

econometrics functions for Octave

Python3-statsmodels

Python3 module for the estimation of statistical models

R-base

GNU R statistical computation and graphics system

R-cran-aer

Applied Econometrics with R

R-cran-bayesm

GNU R package for Bayesian inference

R-cran-dynlm

GNU R package for dynamic linear models and time series regression

R-cran-fimport

GNU R package for financial engineering -- fImport

R-cran-fnonlinear

GNU R package for financial engineering -- fNonlinear

R-cran-foreign

GNU R package to read/write data from other stat. systems

R-cran-funitroots

GNU R package for financial engineering -- fUnitRoots

R-cran-gmm

GNU R generalized method of moments and generalized empirical likelihood

R-cran-hmisc

GNU R miscellaneous functions by Frank Harrell

R-cran-isocodes

GNU R package providing tables for several ISO codes

R-cran-lme4

GNU R package for linear mixed effects model fitting

R-cran-mcmcpack

R routines for Markov chain Monte Carlo model estimation

R-cran-mfilter

GNU R package providing miscellaneous time series filters

R-cran-plm

GNU R estimators and tests for panel data econometrics

R-cran-pwt

GNU R package for the Penn World Tables (version 5.6 to 7.1)

R-cran-pwt8

GNU R package for the Penn World Tables (version 8.x)

R-cran-pwt9

GNU R package for the Penn World Tables (version 9.x)

R-cran-rdbnomics

access to hundreds of millions data series from DBnomics API

R-cran-rsdmx

GNU R package for the Statistical Data and Metadata Exchange (SDMX) framework

R-cran-tseries

GNU R package for time-series analysis and comp. finance

R-cran-urca

GNU R package providing unit root and cointegration tests

R-cran-wdi

GNU R package for accessing the World Development Indicators

Official Debian packages with lower relevance

Elpa-ess

Emacs mode for statistical programming and data analysis

Science-financial

Debian Science financial engineering and computational finance

Science-mathematics

Debian Science Mathematics packages

Science-numericalcomputation

Debian Science Numerical Computation packages

Science-social

Debian Science social sciences packages

Science-statistics

Debian Science Statistics packages

Debian packages in contrib or non-free

Dynare-matlab

MATLAB support for Dynare

X13as

seasonal adjustment software for modeling time series

No known packages available

Dolo

Economic modelling in Python

Minsky

system dynamics program with additional features for economics

Netlogo

multi-agent programmable modeling environment

Pksfc

R package to simulate Post-Keynesian Stock-Flow Consistent Models

Python3-pandasdmx

python- and pandas-powered client for statistical data and metadata exchange

Python3-quantecon

high performance, open source Python code library for economics

R-cran-ecdat

R data sets for econometrics

R-cran-pdfetch

Fetch Economic and Financial Time Series Data from Public Sources

R-cran-vars

VAR, SVAR and SVEC Models in R

R-other-bmr

bayesian Macroeconometrics in R

R-other-gecon

solver for large scale dynamic general equilibrium models

Recs

MATLAB solver for DSGE models

Repast-hpc

agent-based modeling for large-scale distributed computing platforms

Repast-symphony

platform for extremely flexible models of interacting agents

Electrophysiology - Debian Science packages for Electrophysiology

This metapackage will install Debian packages which might be useful for scientists doing electrophysiology-based neuroscience research.

The selection of packages is targeting the application of analysis techniques. Methods developers are referred to the science-statistics, science-imageanalysis, science-numericalcomputation, med-imaging, and med-imaging-dev metapackages for a variety of additional software that might be useful for electrophysiology research.

Official Debian packages with high relevance

Libdrawtk-dev

Library to simple and efficient 2D drawings (development files)

Libgdf-dev

IO library for the GDF -- development library

Sigviewer

GUI viewer for biosignals such as EEG, EMG, and ECG

Official Debian packages with lower relevance

Aghermann

Sleep-research experiment manager

Klustakwik

automatic sorting of the samples (spikes) into clusters

Libbiosig-dev

I/O library for biomedical data - development files

Libeegdev-dev

Biosignal acquisition device library (Development files)

Librtfilter-dev

realtime digital filtering library (development files)

Libxdffileio-dev

Library to read/write EEG data file formats (development files)

Python3-bioxtasraw

process biological small angle scattering data

Python3-neo

Python IO library for electrophysiological data formats

Science-dataacquisition

Debian Science data acquisition packages

Science-neuroscience-modeling

Debian Science packages for modeling of neural systems

Stimfit

Program for viewing and analyzing electrophysiological data

Packaging has started and developers might try the packaging code in VCS

Eegview

Software to display EEG data in realtime

Libmcpanel-dev

Library to display multichannel data in realtime (Developement files)

Neo

IO library for electrophysiological data formats in Python

Openelectrophy

data analysis GUI for intra- and extra-cellular recordings

Unofficial packages built by somebody else

Eeglab

toolbox for processing and visualization of electrophysiological data

No known packages available but some record of interest (WNPP bug)

Bluespike

Data Acquisition and Neural Spike Processing Software

Meabench

tools for recording from MEAs and RT processing

Relacs

framework for closed-loop neurophysiological experiments

Spykeview

GUI application for navigating, analyzing and visualizing electrophysiological datasets

No known packages available

Chronus

platform for analysis of neural signals

Mclust

Matlab toolbox for clustering of electrophysiologic recordings

Neurodata

suite to analyze data acquired from electrophysiology experiments

Nspike

electrophysiological and behavioral data collection

Patchclamp

recorder of single-channel and whole-cell currents

Pymeg

suite for analysis of magnetoencephalography (MEG) data

Qrtailab

Qt-GUI for RTAI

Rtxi

real-time data acquisition and control applications in biological research

Spike

spike train analysis toolbox

Trellis-neuro

interface to neurophysiology data acquisition and stimulation instruments

Engineering - Debian Science Engineering packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Engineering.

Please note that there is an additional package engineering-dev which depends from packages which are useful to develop engineering related software.

Official Debian packages with high relevance

Calculix-ccx

Three-Dimensional Structural Finite Element Program

Calculix-cgx

Calculix cgx is a 3-dimensional pre- and post-processor for fem

Cba

Continuous Beam Analysis

Cgns-convert

CFD General Notation System - Conversion tools

Code-aster

Code_Aster finite element program - metapackage

Code-aster-gui

Graphical user interface for Code_Aster - client

Code-saturne

General purpose Computational Fluid Dynamics (CFD) software

Dime

DXF Import, Manipulation, and Export programs

Eficas

Graphical editor for Code Aster command files

Feel++-apps

A library for the finite element method

Fenics

Automated Solution of Differential Equations

Freecad

Extensible Open Source CAx program

Gerris

Fluid Flow Solver

Getdp

general environment for the treatment of discrete problems

Gmsh

Three-dimensional finite element mesh generator

Hdfview

Java HDF Object viewer

Libadios-bin

ADIOS Adaptable IO system for simulations - binaries

Librecad

Computer-aided design (CAD) system

Libsilo-bin

Utilities to manipulate libsilo files

Lxi-tools

LAN eXtensions for Instrumentation (LXI) software interface

Netgen

Automatic 3d tetrahedral mesh generator

Oce-draw

??? missing short description for package oce-draw :-(

Openfoam

Open source toolbox for Computational Fluid Dynamics (CFD) - binaries

Persalys

GUI for uncertainty treatment and variabilities management

Python3-admesh

Python bindings for the ADMesh (Python 3)

Python3-dolfin

Base Python interface for DOLFIN (Python 3)

Python3-escript

Escript/Finley finite elements Python3 system (with OpenMP)

Python3-escript-mpi

(OpenMP + MPI)

Python3-fiat

tabulation of finite element function spaces (Python 3)

Python3-openturns

Python3 front-end of OpenTURNS (aka TUI)

Python3-persalys

GUI for uncertainty treatment (Python bindings)

Python3-silo

Python3 interface to the SILO Scientific I/O library

Sailcut

Sail design and plotting software

Scram

Probabilistic Risk Analysis Tool

Sfc

SyFi Form Compiler

Solvespace

Parametric 2d/3d CAD

Syrthes

Transient thermal simulations in complex solid geometries

Tetgen

Quality Tetrahedral Mesh Generator

Z88

Finite Element Analysis Program - runtime

Official Debian packages with lower relevance

Ann-tools

Approximate Nearest Neighbor Searching library (tools)

Calculix-ccx-doc

Three-Dimensional Structural Finite Element Program (documentation files)

Calculix-ccx-test

Three-Dimensional Structural Finite Element Program (documentation files)

Calculix-cgx-examples

Example files for Calculix GraphiX

Logcentral

Logging service for distributed applications

Logcentral-tools

Logging service for distributed applications

R-cran-spc

GNU R Statistical Process Control

Debian packages in contrib or non-free

Metis-edf

Family of Multilevel Partitioning Algorithms

Packaging has started and developers might try the packaging code in VCS

Brlcad

powerful combinatorial Constructive Solid Geometry (CSG)

Diet-agent

DIET grid middleware - agent

Openmeca

Multibody mechanical simulator

Salome-gui

Numerical simulation pre- and post-processor

Salome-jobmanager

job manager for the Salomé platform

Salome-kernel

Numerical simulation pre- and post-processor

Salome-med

Numerical simulation pre- and post-processor

Salome-paravis

paraview-based visualization module for Salome

Salome-smesh

Numerical simulation pre- and post-processor - smesh module

Salome-yacs

Numerical simulation pre- and post-processor - yacs module

Unofficial packages built by somebody else

Tochnog

A free implicit/explicit finite element analysis program

Varkon

A CAD-system with parametric modelling

No known packages available but some record of interest (WNPP bug)

Avl

Analyser for the aerodynamic and flight-dynamic of rigid aircraft.

No known packages available

Pycgns

Package is a Python binding to the CGNS library

Engineering-dev - Debian Science Engineering-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Engineering.

You might also be interested in the science-engineering metapackage.

Official Debian packages with high relevance

Code-saturne-bin

General purpose Computational Fluid Dynamics (CFD) software - binaries

Code-saturne-include

General purpose Computational Fluid Dynamics (CFD) software - includes

Libadios-dev

ADIOS Adaptable IO system for simulations

Libalberta-dev

adaptive finite element library (development files)

Libann-dev

Approximate Nearest Neighbor Searching library (development files)

Libbasix-dev

Finite Element Basis Function Definition Runtime Library (development headers)

Libbox-dev

Boxlib: C++ Block-structured finite difference algorithms library

Libceres-dev

nonlinear least squares minimizer (development files)

Libcgns-dev

CFD General Notation System library (dev files)

Libcoin-dev

high-level 3D graphics devkit with Open Inventor and VRML97 support

Libdeal.ii-dev

Differential Equations Analysis Library - development files

Libdime-dev

DXF Import, Manipulation, and Export library - devel

Libdolfinx-dev

Shared links and header files for DOLFIN

Libdxflib-dev

Development files for the dxflib library

Libfeel++-dev

A library for the finite element method

Libflann-dev

Fast Library for Approximate Nearest Neighbors - development

Libgetfem++-dev

transitional package

Libhdf5-serial-dev

transitional dummy package

Libitpp-dev

C++ library of signal processing and communication routines: Headers

Libjhdf4-java

Java HDF4 Object Package

Libjhdf5-java

Java HDF5 Object Package

Liblxi-dev

LAN eXtensions for Instrumentation (LXI) software interface

Libmadlib-dev

mesh adaptation library

Libmed-dev

Development files for libmed

Libmedc-dev

Development files for libmedc

Libmedimport-dev

Development files for libmedimport0

Libnetcdf-dev

creation, access, and sharing of scientific data

Libnfft3-dev

development files for the NFFT library

Libnlopt-dev

nonlinear optimization library -- development package

Liboce-ocaf-dev

??? missing short description for package liboce-ocaf-dev :-(

Liboce-visualization-dev

??? missing short description for package liboce-visualization-dev :-(

Libopenturns-dev

headers and development libraries for OpenTURNS

Libp4est-dev

Algorithms for Parallel Adaptive Mesh Refinement - development files

Libplb-dev

CFD solver based on the lattice Boltzmann method. Development files

Libsilo-dev

Development files for SILO Scientific I/O library from LLNL

Libsis-jhdf5-java

easy-to-use HDF library for Java

Libslepc3.4.2-dev

Scalable Library for Eigenvalue Problem Computations

Libslicot-dev

numerical algorithms from systems and control theory (static library)

Libtet1.5-dev

Quality Tetrahedral Mesh Generator

Libug-dev

software framework for finite element methods (development files)

Libxdmf-dev

eXtensible Data Model and Format development tools

Python3-basix

Finite Element Basis Function Definition Runtime Library (Python 3)

Python3-collada

Python 3 module for creating, editing and loading COLLADA

Python3-dolfinx

Python interface for DOLFIN (Python 3)

Python3-ffcx

next-gen compiler for finite element variational forms (Python 3)

Python3-fluids

Python 3 fluid dynamics and engineering design library

Python3-netcdf4

Python 3 interface to the netCDF4 (network Common Data Form) library

Python3-pygalmesh

Python 3 frontend to CGAL's 3D mesh generators

Python3-pynfft

Python bindings for the NFFT3 library - Python 3

Python3-pyode

Python bindings for The Open Dynamics Engine

R-cran-rnetcdf

GNU R package that provides an R interface to NetCDF datasets

Trilinos-all-dev

object-oriented framework for large-scale problems - development files (ALL)

Official Debian packages with lower relevance

Ceres-solver-doc

documentation for ceres-solver

Libgtkdatabox-dev

Gtk+ library to display large amounts of numerical data (development)

Libgtkdataboxmm-dev

C++ bindings for GtkDatabox - development files

Libqwt-dev

Qt widgets library for technical applications (development, qt4)

Libqwt5-qt4-dev

Qt4 widgets library for technical applications (development)

Openturns-examples

examples of OpenTURNS functionalities

Debian packages in contrib or non-free

Libmetis-edf-dev

Family of Multilevel Partitioning Algorithms

Packaging has started and developers might try the packaging code in VCS

Libdiet-admin2.8-dev

DIET grid middleware - admin development files

Libdiet-client2.8-dev

DIET grid middleware - client development files

Libdiet-dagda2.8-dev

DIET grid middleware - dagda development files

Libdiet-sed2.8-dev

DIET grid middleware - sed development files

Libelmer-dev

finite element multiphysics suite - development files

Libgismo-dev

Geometry plus simulatiom modules development files

Libluminate-dev

Illuminator Distributed Visualization Library: development files

Salome-kernel-dev

Numerical simulation pre- and post-processor development files

No known packages available

Pycgns

Package is a Python binding to the CGNS library

Financial engineering - Debian Science financial engineering and computational finance

This metapackage will install Debian Science packages for financial engineering and computational finance.

Official Debian packages with high relevance

Libstopt-dev

library for stochastic optimization problems (development package)

Python3-stopt

library for stochastic optimization problems (Python 3 bindings)

R-cran-fasianoptions

GNU R package for financial engineering -- fAsianOptions

R-cran-fassets

GNU R package for financial engineering -- fAssets

R-cran-fbasics

GNU R package for financial engineering -- fBasics

R-cran-fbonds

GNU R package for financial engineering -- fBonds

R-cran-fcopulae

GNU R package for financial engineering -- fCopulae

R-cran-fexoticoptions

GNU R package for financial engineering -- fExoticOptions

R-cran-fextremes

GNU R package for financial engineering -- fExtremes

R-cran-fgarch

GNU R package for financial engineering -- fGarch

R-cran-fimport

GNU R package for financial engineering -- fImport

R-cran-fmultivar

GNU R package for financial engineering -- fMultivar

R-cran-fnonlinear

GNU R package for financial engineering -- fNonlinear

R-cran-foptions

GNU R package for financial engineering -- fOptions

R-cran-fportfolio

GNU R package for financial engineering -- fPortfolio

R-cran-fregression

GNU R package for financial engineering -- fRegression

R-cran-ftrading

GNU R package for financial engineering -- fTrading

R-cran-funitroots

GNU R package for financial engineering -- fUnitRoots

R-cran-timedate

GNU R package for financial engineering -- timeDate

R-cran-timeseries

GNU R package for financial engineering -- timeSeries

Geography - Debian Science Geography packages

This metapackage will install Debian Science packages related to Geography. You might also be interested in the field::geography debtag and, depending on your focus, in the education-geography metapackage.

Official Debian packages with high relevance

Avce00

Conversion of ESRI Arcinfo Vector Coverage in E00 format

E00compr

Program to read/write Arcinfo compressed E00 files

Gdal-bin

Geospatial Data Abstraction Library - Utility programs

Geoip-bin

IP lookup command line tools that use the GeoIP library

Gis-workstation

Geographic Information Systems (GIS) workstation

Gmt

Generic Mapping Tools

Gosmore

Openstreetmap.org viewer / wayfinder / search client

Gpsbabel

GPS file conversion plus transfer to/from GPS units

Gpsd

Global Positioning System - daemon

Gpsd-clients

Global Positioning System - clients

Gpsman

GPS data graphical manager

Gpsmanshp

Tcl interface to shapelib

Gpstrans

communicate via serial port with a Garmin GPS receiver

Gpx2shp

convert GPS or GPX file to ESRI Shape file

Grace

XY graphing and plotting tool

Grass

Geographic Resources Analysis Support System (GRASS GIS)

Grass-doc

GRASS GIS user documentation

Hyantesite

geomatic tool to compute neighbourhood population potential

Hydroffice.bag-tools

command-line tools for hydroffice.bag

Josm

Editor for OpenStreetMap

Mapnik-utils

C++ toolkit for developing GIS applications (utilities)

Mapserver-bin

MapServer utilities

Ogdi-bin

Open Geographic Datastore Interface Library -- utilities

Openscenegraph

3D scene graph, utilities and examples (binaries)

Osm2pgsql

OpenStreetMap data to PostgreSQL converter

Osmpbf-bin

OpenStreetMap PBF file format library - tools

Pgadmin3

graphical administration tool for PostgreSQL

Phppgadmin

web-based administration tool for PostgreSQL

Postgis

Geographic objects support for PostgreSQL

Proj-bin

Cartographic projection library (tools)

Python3-cartopy

Cartographic library for Python 3

Python3-mapnik

Python 3 interface to the mapnik library

Python3-mapscript

Python library for MapServer

Python3-spaghetti

Analysis of Network-constrained Spatial Data

Qgis

Geographic Information System (GIS)

Qgis-plugin-grass

GRASS plugin for QGIS

R-cran-fields

GNU R tools for spatial data

R-cran-mapdata

GNU R support for producing geographic maps (supplemental data)

R-cran-mapproj

GNU R support for cartographic projections of map data

R-cran-maps

GNU R support for producing geographic maps

R-cran-maptools

GNU R Tools for reading and handling spatial objects

R-cran-raster

GNU R geographic data analysis and modeling

R-cran-sp

GNU R classes and methods for spatial data

Sac2mseed

Convert SAC waveform data to MiniSEED

Viking

GPS data editor, analyzer and viewer

Official Debian packages with lower relevance

Libmseed-dev

seed data records manipulation library (development files)

Python3-pyepsg

easy access to the EPSG database (Python 3)

Sumo

Simulation of Urban MObility (SUMO)

Debian packages in contrib or non-free

Googleearth-package

utility to automatically build a Debian package of Google Earth

Packaging has started and developers might try the packaging code in VCS

Earth3d

Map client displaying a 3D model of the world

Geometry - Debian Science geometry packages

This metapackage will install Debian Science packages related to geometry. You might also be interested in the field::mathematics debtag and, depending on your focus, in the education-mathematics metapackage.

Official Debian packages with high relevance

Carmetal

dynamic geometry software with highly ergonomic UI

Geogebra-kde

KDE integration layer for GeoGebra

Python3-gengeo

DEMGenGeo is a library for creating geometry files (Python 3)

Official Debian packages with lower relevance

Libcgal-dev

C++ library for computational geometry (development files)

Libgeometry-primitive-perl

module to represent geometric entities

Libmath-geometry-voronoi-perl

Perl module to compute Voronoi diagrams from sets of points

Libopengv-dev

Computer vision methods for solving geometric vision problems.

Octave-geometry

extension of MatGeom functionality in Octave

Python3-opengv

Computer vision methods for solving geometric vision problems.

Rubiks

Small collection of Rubik's cube solvers

Packaging has started and developers might try the packaging code in VCS

Libgismo-dev

Geometry plus simulatiom modules development files

Salome-geom

Numerical simulation pre- and post-processor - geometry module

High energy physics - Debian Science High Energy Physics packages

This metapackage will install Debian Science packages related to High Energy Physics, which is a branch of physics that studies the elementary subatomic constituents of matter and radiation, and their interactions. The field is also called Particle Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Official Debian packages with high relevance

Cernlib

CERNLIB data analysis suite - general use metapackage

Cernlib-base

CERNLIB data analysis suite - common files

Cernlib-core

CERNLIB data analysis suite - main libraries and programs

Cernlib-extras

CERNLIB data analysis suite - extra programs

Cernlib-montecarlo

CERNLIB Monte Carlo libraries

Dials

Diffraction Integration for Advanced Light Sources

Dzedit

CERNLIB data analysis suite - ZEBRA documentation editor

Feynmf

set of LaTeX macros for creating Feynman diagrams

Geant321

[Physics] Particle detector description and simulation tool

Herwig++

Multi-purpose event generator for high energy physics

Kuipc

CERNLIB data analysis suite - KUIP compiler

Kxterm

CERNLIB data analysis suite - KUIP terminal emulator

Libroot-bindings-python5.34

Python extension for ROOT - runtime libraries

Libroot-bindings-ruby5.34

Ruby extension for ROOT - run-time library

Libroot-core5.34

Numerical data analysis framework - shared runtime libraries

Libroot-geom5.34

Geometry library for ROOT - run-time library

Libroot-graf2d-gpad5.34

Canvas and pad library for ROOT - run-time library

Libroot-graf2d-graf5.34

Graf library for ROOT

Libroot-graf2d-postscript5.34

Postscript/PDF renderer library for ROOT

Libroot-graf3d-eve5.34

Event display library for ROOT

Libroot-graf3d-g3d5.34

Basic 3D shapes for ROOT

Libroot-graf3d-gl5.34

GL plugin for ROOT - runtime library

Libroot-gui-ged5.34

GUI element for editing various ROOT objects

Libroot-gui5.34

GUI library for ROOT - run-time library

Libroot-hist-spectrum5.34

Spectra analysis library for ROOT

Libroot-hist5.34

Histogram library for ROOT - run-time library

Libroot-html5.34

Html documentation generator for ROOT - runtime library

Libroot-io-xmlparser5.34

XML parser of ROOT objects - runtime library

Libroot-io5.34

Input/output of ROOT objects - runtime library

Libroot-math-foam5.34

Compact Version of Cellular Event Generator

Libroot-math-genvector5.34

Generalized vector library for ROOT

Libroot-math-mathcore5.34

Core mathemathics library for ROOT

Libroot-math-mathmore5.34

GSL interface library for ROOT

Libroot-math-matrix5.34

Matrix library for ROOT

Libroot-math-minuit5.34

Minuit plugin for ROOT

Libroot-math-mlp5.34

Multi layer perceptron extension for ROOT - run-time libraries

Libroot-math-physics5.34

Physics library for ROOT

Libroot-math-quadp5.34

QuadP extension for ROOT - run-time libraries

Libroot-math-smatrix5.34

Sparse matrix library for ROOT

Libroot-math-splot5.34

Splot library for ROOT

Libroot-math-unuran5.34

Random number generator library

Libroot-misc-memstat5.34

Memory statistics tool for use with ROOT

Libroot-misc-minicern5.34

Small version of CERNLIB for use with ROOT

Libroot-misc-table5.34

Table library for ROOT

Libroot-montecarlo-eg5.34

Event generator library for ROOT

Libroot-montecarlo-vmc5.34

Virtual Monte-Carlo library for ROOT

Libroot-net-auth5.34

Authentication extension for ROOT

Libroot-net-bonjour5.34

Zeroconf extension for ROOT - run-time libraries

Libroot-net-ldap5.34

LDAP extension for ROOT

Libroot-net5.34

Net library for ROOT

Libroot-proof-proofplayer5.34

PROOF plugin for ROOT

Libroot-proof5.34

PROOF library for ROOT

Libroot-roofit5.34

ROOT extension for modeling expected distributions - libraries

Libroot-tmva5.34

Toolkit for multivariate data analysis

Libroot-tree-treeplayer5.34

Library to loop over a ROOT tree

Libroot-tree5.34

Tree library for ROOT

Looptools

Integral Evaluator of One-loop Feynman Diagram

Neuron

Simulation environment for computational models of neurons

Nypatchy

CERNLIB data analysis suite - patch pre-processor for source code

Octave-lhapdf

Octave Bindings for LHAPDF

Paw

Physics Analysis Workstation - a graphical analysis program

Paw++

Physics Analysis Workstation (Lesstif-enhanced version)

Pawserv

CERNLIB data analysis suite - distributed PAW and file transfer servers

Pythia8-root-interface

Interfaces to call ROOT functions in PYTHIA8 code

Rivet

Robust Independent Validation of Experiment and Theory

Rivet-plugins

Analysis plugins of Rivet

Rivet-root-converter

Rivet and ROOT file format converter

Root-macro-fastjet

FastJet macro for CERN ROOT

Root-plugin-geom-gdml

GDML import/export module for ROOT geometries

Root-plugin-geom-geombuilder

Geometry builder plugin for ROOT

Root-plugin-geom-geompainter

Geometry painter plugin for ROOT

Root-plugin-graf2d-asimage

AfterImage plugin for ROOT

Root-plugin-graf2d-qt

Graf2d Qt plugin for ROOT

Root-plugin-graf2d-x11

X window system plugin for ROOT

Root-plugin-graf3d-x3d

X 3D plugin for ROOT

Root-plugin-gui-fitpanel

GUI element for fits plugin for ROOT

Root-plugin-gui-guibuilder

GUI editor plug-in for ROOT

Root-plugin-gui-qt

Qt plugin for ROOT

Root-plugin-gui-sessionviewer

GUI to browse an interactive PROOF session

Root-plugin-hist-hbook

Hbook plugin for ROOT

Root-plugin-hist-histpainter

Histogram painter plugin for ROOT

Root-plugin-hist-spectrumpainter

Spectrum painter plugin for ROOT

Root-plugin-io-sql

SQL plugin for ROOT

Root-plugin-io-xml

XML reader plugin for ROOT

Root-plugin-math-fftw3

FFTw plugin for ROOT

Root-plugin-math-fumili

Fumili plugin for ROOT

Root-plugin-math-minuit2

Minuit version 2 plugin for ROOT

Root-plugin-montecarlo-pythia8

Pythia version 8 plugin for ROOT

Root-plugin-net-globus

Globus plugin for ROOT

Root-plugin-net-krb5

Kerberos (version 5) plugin for ROOT

Root-plugin-sql-mysql

MySQL client plugin for ROOT

Root-plugin-sql-odbc

ODBC plugin for ROOT

Root-plugin-sql-pgsql

PostgreSQL client plugin for ROOT

Root-plugin-tree-treeviewer

GUI to browse a ROOT tree

Root-system

metapackage to install all ROOT packages

Root-system-bin

Numerical data analysis framework - general applications

Root-system-common

Common files for ROOT

Root-system-proofd

Parallel ROOt Facility - distributed, parallel computing

Root-system-rootd

ROOT remote file server

Sdpb

Semidefinite program solver

Thepeg

Toolkit for High Energy Physics Event Generation

Thepeg-gui

Java GUI of ThePEG

Zftp

CERNLIB data analysis suite - file transfer program

Official Debian packages with lower relevance

Geant321-doc

[Physics] Documentation for GEANT 3.21

Lhapdf-pdfsets-minimal

Minimal PDF Sets of LHAPDF

Paw-demos

Physics Analysis Workstation examples and tests

Root-system-doc

Tutorial and test suite for the ROOT system

Packaging has started and developers might try the packaging code in VCS

Geant4

physics simulation toolkit

High energy physics (devel) - Debian Science High Energy Physics development packages

This metapackage will install Debian Science packages related to development of High Energy Physics applications, which is a branch of physics that studies the elementary subatomic constituents of matter and radiation, and their interactions. The field is also called Particle Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Official Debian packages with high relevance

Cernlib-base-dev

CERNLIB data analysis suite - dependencies checking script

Cernlib-core-dev

CERNLIB data analysis suite - core development files

Fcc

Script to compile C/C++ programs and link to Fortran libraries

Herwig++-dev

Herwig++ development files

Libclhep-dev

CLHEP: A Class Library for High Energy Physics - development

Libfastjet-dev

Development files of FastJet

Libfastjet-fortran-dev

Fortran bindings of FastJet - development files

Libfastjetplugins-dev

FastJet plugins - development files

Libfastjettools-dev

Tools for FastJet - development files

Libhepmc-dev

Event Record for Monte Carlo Generators - development files

Libhepmc3-dev

Event Record for Monte Carlo Generators - development files

Libhepmcfio-dev

fio library of HepMC - development files

Libhepmcinterface8-dev

HepMC interface for PYTHIA8 - development files (obsolete)

Libkim-api-dev

Development files for KIM-API

Liblhapdf-dev

[Physics] Les Houches Accord PDF Interface - development files

Libmctc-lib-dev

modular computation tool chain library (development files)

Libmmdb2-dev

macromolecular coordinate library - development files

Libncrystal-dev

Monte Carlo simulations of neutrons in crystals (dev files)

Libooptools-dev

Development files of LoopTools

Libpythia8-dev

PYTHIA event generator of high energy physics - development files

Librivet-dev

Development files of Rivet

Libroot-bindings-python-dev

Python extension for ROOT - development files

Libroot-bindings-ruby-dev

Ruby extension for ROOT - development headers

Libroot-core-dev

Header files for ROOT

Libroot-geom-dev

Geometry library for ROOT - development files

Libroot-graf2d-gpad-dev

Canvas and pad library for ROOT - development files

Libroot-graf2d-graf-dev

Graf library for ROOT - development files

Libroot-graf2d-postscript-dev

Postscript/PDF renderer library for ROOT - development files

Libroot-graf3d-eve-dev

Event display library for ROOT - development files

Libroot-graf3d-g3d-dev

Basic 3D shapes for ROOT - development files

Libroot-graf3d-gl-dev

GL plugin for ROOT - development files

Libroot-gui-dev

GUI library for ROOT - development files

Libroot-gui-ged-dev

GUI element for editing various ROOT objects - development files

Libroot-hist-dev

Histogram library for ROOT - development files

Libroot-hist-spectrum-dev

Spectra analysis library for ROOT - development files

Libroot-html-dev

Html documentation generator for ROOT - development files

Libroot-io-dev

Input/output of ROOT objects - development files

Libroot-io-xmlparser-dev

XML parser of ROOT objects - development files

Libroot-math-foam-dev

Compact Version of Cellular Event Generator - development files

Libroot-math-genvector-dev

Generalized vector library for ROOT - development files

Libroot-math-mathcore-dev

Core mathemathics library for ROOT - development files

Libroot-math-mathmore-dev

GSL interface library for ROOT - development files

Libroot-math-matrix-dev

Matrix library for ROOT - development files

Libroot-math-minuit-dev

Minuit plugin for ROOT - development files

Libroot-math-mlp-dev

Multi layer perceptron extension for ROOT - development files

Libroot-math-physics-dev

Physics library for ROOT - development files

Libroot-math-quadp-dev

QuadP extension for ROOT - development files

Libroot-math-smatrix-dev

Sparse matrix library for ROOT - development files

Libroot-math-splot-dev

Splot library for ROOT - development files

Libroot-math-unuran-dev

Random number generator library - development files

Libroot-misc-memstat-dev

Memory statistics tool for use with ROOT - development files

Libroot-misc-minicern-dev

Small version of CERNLIB for use with ROOT - development files

Libroot-misc-table-dev

Table library for ROOT - development files

Libroot-montecarlo-eg-dev

Event generator library for ROOT - development files

Libroot-montecarlo-vmc-dev

Virtual Monte-Carlo library for ROOT - development files

Libroot-net-auth-dev

Authentication extension for ROOT - development files

Libroot-net-bonjour-dev

Zeroconf extension for ROOT

Libroot-net-dev

Net library for ROOT - development files

Libroot-net-ldap-dev

LDAP extension for ROOT - development files

Libroot-proof-dev

PROOF library for ROOT - development files

Libroot-proof-proofplayer-dev

PROOF plugin for ROOT - development files

Libroot-roofit-dev

ROOT extension for modeling expected distributions - development

Libroot-static

Static archive of ROOT libraries

Libroot-tmva-dev

Toolkit for multivariate data analysis - development files

Libroot-tree-dev

Tree library for ROOT - development files

Libroot-tree-treeplayer-dev

Library to loop over a ROOT tree - development files

Libsiscone-dev

Seedless Infrared Safe Cone jet finder - development files

Libsiscone-spherical-dev

Spherical version of SISCone - development files

Libthepeg-dev

Development library of ThePEG

Neuron-dev

Neuron simulation environment - Development files

Python3-dials

Diffraction Integration for Advanced Light Sources - Python3

Python3-mpiplus

Python GPU framework for alchemical free energy calculations (Python 3)

Python3-neuron

Neuron simulation environment - Python bindings

Python3-pymbar

Python implementation of the multistate Bennett acceptance ratio (MBAR)

Rivet-plugins-dev

Template generator of Rivet analysis plugin

Official Debian packages with lower relevance

Ckon

automatic build tool for ROOT data analysis software

Clhep-doc

Documentation of CLHEP

Fastjet-doc

Documentation of FastJet

Fastjet-examples

Example source files of FastJet

Hepmc-examples

Event Record for Monte Carlo Generators - example files

Hepmc-reference-manual

Event Record for Monte Carlo Generators - Reference Manual

Hepmc-user-manual

Event Record for Monte Carlo Generators - User Manual

Lhapdf-ccwrap-doc

C++ Bindings for LHAPDF - documentation

Pythia8-doc-html

HTML Documentation of PYTHIA8

Pythia8-doc-worksheet

Worksheet Documentation of PYTHIA8

Pythia8-examples

Example source files of PYTHIA8

Refmac-dictionary

dictionary for macromolecular refinement and model building

Rivet-plugins-doc

HTML documentation for Rivet analysis plugins

Rivet-reference

Rivet code reference

Rivet-user-manual

Rivet User Manual

Siscone-doc-html

Developer's reference manual of SISCone (HTML)

Siscone-doc-pdf

Developer's reference manual of SISCone (PDF)

Siscone-examples

Seedless Infrared Safe Cone jet finder - example files

Thepeg-reference

Code reference of ThePEG

Image analysis - Debian Science image analysis packages

This metapackage will install Debian Science packages related to scientific image acquisition. This might be used in several sciences (as for instance science-dataacquisition, science-viewing and science-typesetting).

Official Debian packages with high relevance

Gpiv

GUI program for Particle Image Velocimetry

Gpivtools

command line programs for Particle Image Velocimetry

Gwyddion

Scanning Probe Microscopy visualization and analysis tool

Libcvd-tools

C++ library for computer vision, image, and video processing - tools

Limereg

Lightweight Image Registration

Teem-apps

Tools to process and visualize scientific data and images - command line tools

Image analysis development - Debian Science development of image analysis applications

This metapackage will install Debian Science development libraries to develop scientific image analysis applications acquisitions.

Official Debian packages with high relevance

Cimg-dev

powerful image processing library

Libcv-dev

??? missing short description for package libcv-dev :-(

Libcvd-dev

C++ library for computer vision, image, and video processing - devel files

Libimglib2-java

multidimensional image processing library in Java

Liblimereg-dev

Library for lightweight image registration [development files]

Libsimage-dev

generic interface to various image file format libraries. Development files.

Libvigraimpex-dev

development files for the C++ computer vision library

Libvlfeat-dev

Computer vision library focussing on visual features and clustering

Python3-imageio

library for reading and writing image data (Python 3)

Python3-meshio

library for reading and writing mesh data (Python 3)

Python3-vigra

Python3 bindings for the C++ computer vision library

Official Debian packages with lower relevance

Lib3ds-dev

Autodesk 3D Studio file reader development files

Libfreeimage-dev

Support library for graphics image formats (development files)

Packaging has started and developers might try the packaging code in VCS

Libvisad-java

Visualization for Algorithm Development

Linguistics - Debian Science Linguistics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Linguistics.

Official Debian packages with high relevance

Apertium

Shallow-transfer machine translation engine

Apertium-eval-translator

Evaluate machine translation output against reference

Apertium-lex-tools

Constraint-based lexical selection module

Artha

Handy off-line thesaurus based on WordNet

Cg3

Tools for using the 3rd edition of Constraint Grammar (CG-3)

Collatinus

lemmatisation of latin text

Dimbl

Distributed Memory Based Learner

Fasttext

Efficient learning of word representations and sentence classification library

Frog

tagger and parser for natural languages (runtime)

Giella-sme

Giellatekno single language data for North Saami

Hfst

Helsinki Finite-State Transducer Technology

Hfst-ospell

Spell checker library and tool based on HFST

Irstlm

IRST Language Modeling Toolkit

Libcld2-dev

Compact Language Detector 2, development package

Link-grammar

Carnegie Mellon University's link grammar parser

Lttoolbox

Apertium lexical processing modules and tools

Mbt

memory-based tagger-generator and tagger

Mbtserver

Server extensions for the MBT tagger

Opennlp

wrapper for Apache OpenNLP natural language text processing toolkit

Python3-pynlpl

PyNLPl is a library for Natural Language Processing (Python 3 version)

Python3-thinc

Practical Machine Learning for NLP in Python

R-cran-lexrankr

extractive summarization of text with the LexRank algorithm

R-cran-snowballc

Snowball stemmers based on the C libstemmer UTF-8 library

Sentencepiece

Unsupervised text tokenizer and detokenizer

Timbl

Tilburg Memory Based Learner

Timblserver

Server extensions for Timbl

Ucto

Unicode Tokenizer

Uctodata

Data files for Ucto

Wordnet

electronic lexical database of English language

Official Debian packages with lower relevance

Apertium-af-nl

Transitional dummy package for apertium-afr-nld

Apertium-apy

Apertium APY service

Apertium-arg

Apertium single language data for Aragonese

Apertium-arg-cat

Apertium translation data for the Aragonese-Catalan pair

Apertium-bel

Apertium single language data for Belarusian

Apertium-bel-rus

Apertium translation data for the Belarusian-Russian pair

Apertium-br-fr

Apertium linguistic data to translate between Breton and French

Apertium-ca-it

Transitional dummy package for apertium-cat-ita

Apertium-cat

Apertium single language data for Catalan

Apertium-cat-srd

Apertium translation data for the Catalan-Sardinian pair

Apertium-crh

Apertium single language data for Crimean Tatar

Apertium-crh-tur

Apertium translation data for the Crimean Tatar-Turkish pair

Apertium-cy-en

Apertium translation data for the Welsh-English pair

Apertium-dan

Apertium single language data for Danish

Apertium-dan-nor

Apertium translation data for the Danish-Norwegian pair

Apertium-en-ca

Transitional dummy package for apertium-eng-cat

Apertium-en-es

Transitional dummy package for apertium-eng-spa

Apertium-en-gl

Apertium translation data for the English-Galician pair

Apertium-eo-ca

Apertium translation data for the Esperanto-Catalan pair

Apertium-eo-en

Apertium linguistic data to translate between Esperanto and English

Apertium-eo-es

Apertium translation data for the Esperanto-Spanish pair

Apertium-eo-fr

Apertium translation data for the Esperanto-French pair

Apertium-es-ast

Transitional dummy package for apertium-spa-ast

Apertium-es-ca

Transitional dummy package for apertium-spa-cat

Apertium-es-gl

Apertium translation data for the Spanish-Galician pair

Apertium-es-it

Transitional dummy package for apertium-spa-ita

Apertium-es-pt

Apertium translation data for the Spanish-Portuguese pair

Apertium-es-ro

Apertium translation data for the Spanish-Romanian pair

Apertium-eu-en

Apertium translation data for the Basque-English pair

Apertium-eu-es

Apertium translation data for the Basque-Spanish pair

Apertium-fr-ca

Transitional dummy package for apertium-fra-cat

Apertium-fr-es

Apertium translation data for the French-Spanish pair

Apertium-fra

Apertium single language data for French

Apertium-fra-cat

Apertium translation data for the French-Catalan pair

Apertium-hbs

Apertium single language data for Serbo-Croatian

Apertium-hbs-eng

Apertium translation data for the Serbo-Croatian - English pair

Apertium-hbs-mkd

Apertium translation data for the Serbo-Croatian-Macedonian pair

Apertium-hbs-slv

Apertium translation data for the Serbo-Croatian-Slovenian pair

Apertium-hin

Apertium single language data for Hindi

Apertium-id-ms

Transitional dummy package for apertium-ind-zlm

Apertium-is-sv

Transitional dummy package for apertium-isl-swe

Apertium-isl

Apertium single language data for Icelandic

Apertium-isl-eng

Apertium translation data for the Icelandic-English pair

Apertium-ita

Apertium single language data for Italian

Apertium-kaz

Apertium single language data for Kazakh

Apertium-kaz-tat

Apertium translation data for the Kazakh-Tatar pair

Apertium-mk-bg

Transitional dummy package for apertium-mkd-bul

Apertium-mk-en

Transitional dummy package for apertium-mkd-eng

Apertium-mlt-ara

Apertium translation data for the Maltese-Arabic pair

Apertium-nno

Apertium single language data for Norwegian Nynorsk

Apertium-nno-nob

Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair

Apertium-nob

Apertium single language data for Norwegian Bokmål

Apertium-oc-ca

Apertium translation data for the Occitan-Catalan pair

Apertium-oc-es

Apertium translation data for the Occitan-Spanish pair

Apertium-oci

Apertium single language data for Occitan

Apertium-pol

Apertium single language data for Polish

Apertium-pol-szl

Apertium translation data for the Polish-Silesian pair

Apertium-pt-ca

Transitional dummy package for apertium-por-cat

Apertium-pt-gl

Apertium translation data for the Portuguese-Galician pair

Apertium-rus

Apertium single language data for Russian

Apertium-separable

Reordering separable/discontiguous multiwords

Apertium-sme-nob

Apertium translation data for the Northern Sami-Norwegian Bokmål pair

Apertium-spa

Apertium single language data for Spanish

Apertium-spa-arg

Apertium translation data for the Spanish-Aragonese pair

Apertium-srd

Apertium single language data for Sardinian

Apertium-srd-ita

Apertium translation data for the Sardinian-Italian pair

Apertium-swe

Apertium single language data for Swedish

Apertium-swe-dan

Apertium translation data for the Swedish-Danish pair

Apertium-swe-nor

Apertium translation data for the Swedish-Norwegian pair

Apertium-szl

Apertium single language data for Silesian

Apertium-tat

Apertium single language data for Tatar

Apertium-tur

Apertium single language data for Turkish

Apertium-ukr

Apertium single language data for Ukrainian

Apertium-urd

Apertium single language data for Urdu

Apertium-urd-hin

Apertium translation data for the Urdu-Hindi pair

Frogdata

Data files for Frog

Libapache-opennlp-java

machine learning based toolkit for the processing of natural language text

Libcg3-dev

Headers and shared files to develop using the CG-3 library

Libfasttext-dev

Header files of fastText

Libfolia-dev

Implementation of the FoLiA document format (C++ headers)

Libmbt-dev

memory-based tagger-generator and tagger - development

Libopennlp-maxent-java

OpenNLP Maximum Entropy Package

Libsentencepiece-dev

Header files of SentencePiece

Libticcutils-dev

utility functions used in the context of Natural Language Processing (headers)

Libticcutils2-dev

library for TiCC software - development files

Libtimbl-dev

Tilburg Memory Based Learner - development

Libtimblserver-dev

Server extensions for Timbl - development

Libucto-dev

Unicode Tokenizer - development

Python3-fasttext

fastText binding for Python3

Python3-gensim

Python framework for fast Vector Space Modelling

Python3-nltk

Python3 libraries for natural language processing

Python3-sentencepiece

SentencePiece binding for Python3

Python3-snowballstemmer

Pure Python Snowball stemming library

Python3-streamparser

Python library to parse Apertium stream format

R-cran-nlp

Natural Language Processing Infrastructure for R

R-cran-tm

Text Mining functionality for R

Tfdocgen

TiLP framework documentation generator

Debian packages in experimental

Sequitur-g2p

Grapheme to Phoneme conversion tool

Packaging has started and developers might try the packaging code in VCS

Spacy

Industrial-strength Natural Language Processing (NLP)

Travatar

tree based machine translation toolkit

No known packages available but some record of interest (WNPP bug)

Python3-timbl

Python bindings for the Tilburg Memory Based Learner (Timbl)

No known packages available

Wnsqlbuilder

SQL version of WordNet 3.0

Logic - Debian Science Logic packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Computational Logic. It contains formula transformation tools, solvers for formulas specified in various logics, interactive proof systems, etc.

Official Debian packages with high relevance

Agda

dependently typed functional programming language

Alt-ergo

Automatic theorem prover dedicated to program verification

Boolector

SMT solver for bit-vectors and arrays

Clasp

conflict-driven nogood learning answer set solver

Coala

translates action languages into answer set programs

Coinor-cbc

Coin-or branch-and-cut mixed integer programming solver

Coinor-symphony

COIN-OR solver for mixed-integer linear programs

Coq

proof assistant for higher-order logic (toplevel and compiler)

Cvc3

Automatic theorem prover for SMT problems

Cvc4

automated theorem prover for SMT problems

Depqbf

solver for quantified boolean formulae

Gringo

grounding tools for (disjunctive) logic programs

Hol-light

HOL Light theorem prover

Hol88

Higher Order Logic, system image

Lbt

converts from LTL formulas to Büchi automata

Mace2

program that searches for finite models of first-order statements

Maria

reachability analyzer for Algebraic System Nets

Matita

interactive theorem prover

Maude

high-performance logical framework

Minisat+

solver for pseudo-Boolean constraints

Mona

theorem prover based on automata

Picosat

SAT solver with proof and core support

Proofgeneral

generic frontend for proof assistants

Prover9

theorem prover and countermodel generator

Sat4j

Efficient library of SAT solvers in Java

Spass

automated theorem prover for first-order logic with equality

Toulbar2

Exact combinatorial optimization for Graphical Models

Why

Software verification tool

Why3

Software verification platform

Z3

theorem prover from Microsoft Research

Official Debian packages with lower relevance

Coinor-libcoinmp-dev

Simple C API for COIN-OR Solvers Clp and Cbc -- development

Machine learning - Debian Science Machine Learning packages

This metapackage will install packages useful for machine learning. Included packages range from knowledge-based (expert) inference systems to software implementing the advanced statistical methods that currently dominate the field.

Official Debian packages with high relevance

Autoclass

automatic classification or clustering

Caffe-cpu

Fast, open framework for Deep Learning (Meta)

Gprolog

GNU Prolog compiler

Libcv-dev

??? missing short description for package libcv-dev :-(

Libevocosm-dev

C++ framework for developing evolutionary algorithms

Libfann-dev

Development libraries and header files for FANN

Libga-dev

C++ Library of Genetic Algorithm Components

Liblinear-dev

Development libraries and header files for LIBLINEAR

Libmlpack-dev

intuitive, fast, scalable C++ machine learning library (development libs)

Libocas-dev

Development libraries and header files for LIBOCAS

Libroot-math-mlp-dev

Multi layer perceptron extension for ROOT - development files

Libroot-montecarlo-vmc-dev

Virtual Monte-Carlo library for ROOT - development files

Libroot-tmva-dev

Toolkit for multivariate data analysis - development files

Libshark-dev

development files for Shark

Libshogun-dev

Large Scale Machine Learning Toolbox

Libsvm-dev

LIBSVM header files

Libtorch3-dev

State of the art machine learning library - development files

Libvigraimpex-dev

development files for the C++ computer vision library

Lua-torch-graph

Graph Computation Package for Torch Framework

Lua-torch-image

Image Load/Save Library for Torch Framework

Lua-torch-nn

Neural Network Package for Torch Framework

Lua-torch-nngraph

Neural Network Graph Package for Torch Framework

Lua-torch-optim

Numeric Optimization Package for Torch Framework

Lua-torch-trepl

REPL Package for Torch Framework

Lua-torch-xlua

Lua Extension Package for Torch Framework

Mcl

Markov Cluster algorithm

Mrgingham

Chessboard finder for visual calibration routines

Octave-ga

genetic optimization code for Octave

Pgapack

General-purpose genetic algorithm package

Python3-amp

Atomistic Machine-learning Package (python 3)

Python3-fann2

Python 3 bindings for FANN

Python3-genetic

genetic algorithms in Python

Python3-keras

deep learning framework running on Theano or TensorFlow

Python3-lasagne

deep learning library build on the top of Theano (Python3 modules)

Python3-mdp

Modular toolkit for Data Processing

Python3-mlpy

high-performance Python package for predictive modeling

Python3-opencv

Python 3 bindings for the computer vision library

Python3-sklearn

Python modules for machine learning and data mining - Python 3

Python3-statsmodels

Python3 module for the estimation of statistical models

Python3-thinc

Practical Machine Learning for NLP in Python

Python3-torch

Tensors and Dynamic neural networks in Python (Python Interface)

Python3-torch-sparse

PyTorch Extension Library of Optimized Autograd Sparse Matrix Operations

Python3-vigra

Python3 bindings for the C++ computer vision library

R-cran-amore

GNU R: A MORE flexible neural network package

R-cran-bayesm

GNU R package for Bayesian inference

R-cran-class

GNU R package for classification

R-cran-cluster

GNU R package for cluster analysis by Rousseeuw et al

R-cran-gbm

GNU R package providing Generalized Boosted Regression Models

R-cran-mass

GNU R package of Venables and Ripley's MASS

R-cran-mcmcpack

R routines for Markov chain Monte Carlo model estimation

R-cran-metrics

GNU R evaluation metrics for machine learning

R-cran-mlbench

GNU R Machine Learning Benchmark Problems

R-cran-mlr

Machine learning in GNU R

R-cran-mnp

GNU R package for fitting multinomial probit (MNP) models

R-cran-msm

GNU R Multi-state Markov and hidden Markov models in continuous time

R-cran-tgp

GNU R Bayesian treed Gaussian process models

Root-system

metapackage to install all ROOT packages

Scilab-ann

Scilab module for artificial neural networks

Torch-core-free

Scientific Computing Framework For Luajit (Core Components)

Toulbar2

Exact combinatorial optimization for Graphical Models

Vowpal-wabbit

fast and scalable online machine learning algorithm

Weka

Machine learning algorithms for data mining tasks

Yap

High-performance Prolog System

Official Debian packages with lower relevance

Ask

Adaptive Sampling Kit for big experimental spaces

Libdlib-dev

C++ toolkit for machine learning and computer vision - development

Libdlpack-dev

Open In Memory Tensor Structure

Libfannj-java

FannJ a Java binding to the Fast Artificial Neural Network (FANN) C library

Libfclib-dev

read and write problems from the Friction Contact Library (headers)

Libmkldnn-dev

Intel Math Kernel Library for Deep Neural Networks (dev)

Libmrgingham-dev

Chessboard finder for visual calibration routines

Libxgboost-predictor-java

Java implementation of XGBoost predictor for online prediction tasks

Libxsmm-dev

Library for matrix operations and deep learning primitives

Python3-hdmedians

high-dimensional medians in Python3

Python3-imblearn

library providing resampling techniques

Python3-liac-arff

library for reading and writing ARFF files in Python

Python3-mrgingham

Chessboard finder for visual calibration routines

Science-numericalcomputation

Debian Science Numerical Computation packages

Science-statistics

Debian Science Statistics packages

Science-typesetting

Debian Science typesetting packages

Debian packages in contrib or non-free

Caffe-cuda

Fast, open framework for Deep Learning (Meta)

Packaging has started and developers might try the packaging code in VCS

Spacy

Industrial-strength Natural Language Processing (NLP)

Streamlit

fast way to build custom ML tools

Unofficial packages built by somebody else

Python3-orange

Data mining framework

No known packages available but some record of interest (WNPP bug)

Flann

Fast Library for Approximate Nearest Neighbors

Pybrain

Modular Machine Learning Library

Mathematics - Debian Science Mathematics packages

This metapackage will install Debian Science packages related to Mathematics. You might also be interested in the field::mathematics debtag and, depending on your focus, in the education-mathematics metapackage.

Official Debian packages with high relevance

4ti2

mathematical tool suite for problems on linear spaces -- tools

Agda

dependently typed functional programming language

Auto-07p

software for continuation and bifurcation problems in ODE

Axiom

General purpose computer algebra system: main binary and modules

Bliss

tool to compute graph automorphisms and labelings -- bin

Cohomcalg

sheaf cohomology of line bundles on toric varieties

Coinor-cbc

Coin-or branch-and-cut mixed integer programming solver

Coinor-csdp

Software package for semidefinite programming (binaries)

Coinor-libbonmin-dev

COIN-OR mixed integer programming (developer files)

Coinor-symphony

COIN-OR solver for mixed-integer linear programs

Coq

proof assistant for higher-order logic (toplevel and compiler)

Cryptominisat

SAT solver command line interface

Eclib-tools

Programs for modular symbols and elliptic curves over Q

Eprover

Equational theorem prover

Feel++-apps

A library for the finite element method

Fenics

Automated Solution of Differential Equations

Flintqs

Program using quadratic sieve to factor integers

Form

Symbolic manipulation system

Fplll-tools

Tools to compute LLL-reduction of Euclidian lattices

Freefem

PDE oriented language using Finite Element Method

Freefem++

Provides the binaries of the FreeFem++ FE suite

Freefem3d

Language and solver for partial differential equations in 3D

Freemat

mathematics framework (mostly matlab compatible)

Frobby

Computations with monomial ideals

Gap

computer algebra system for Groups, Algorithms and Programming

Gap-character-tables

GAP Library of character tables

Gap-design

block designs for GAP

Gap-factint

advanced methods for factoring integers for GAP

Gap-float

multi-precision floating-point computation for GAP

Gap-grape

GRaph Algorithms using PErmutation groups for GAP

Gap-guava

coding theory library for GAP

Gap-laguna

LAGUNA GAP package

Gap-openmath

OpenMath phrasebook for GAP

Gap-prim-groups

Database of primitive groups for GAP

Gap-small-groups

Database of small groups for GAP

Gap-small-groups-extra

Large database of small groups for GAP

Gap-sonata

Systems Of Nearrings And Their Applications for GAP

Gap-table-of-marks

GAP TomLib - The GAP Library of Tables of Marks

Gap-toric

toric variety for GAP

Gap-trans-groups

Database of transitive groups for GAP

Geneagrapher

Create tree from Mathematics Genealogy Project (executable)

Geogebra

Dynamic mathematics software for education

Geomview

interactive geometry viewing program

Gerris

Fluid Flow Solver

Getdp

general environment for the treatment of discrete problems

Gfan

program for computing with Groebner fans

Ginac-tools

GiNaC symbolic framework support tools

Gmsh

Three-dimensional finite element mesh generator

Graphviz

rich set of graph drawing tools

Hol-light

HOL Light theorem prover

Julia

high-performance programming language for technical computing

Lcalc

program for calculating with L-functions

Libjgrapht-java

Java library of graph theory data structures and algorithms

Libmatheval1

GNU library for evaluating symbolic mathematical expressions (runtime)

Lp-solve

Solve (mixed integer) linear programming problems

Lrcalc

programs for calculating Littlewood-Richardson coefficients

Lrslib

package to enumerate vertices and extreme rays of a convex polyhedron

Macaulay2

Software system for algebraic geometry research

Magnus

Very simple screen magnifier

Mathicgb

Compute Groebner bases (command line tool)

Mathomatic

portable Computer Algebra System (CAS)

Matita

interactive theorem prover

Maxima-sage

Computer algebra system -- base system

Mcl

Markov Cluster algorithm

Minisat

Fast and lightweight SAT solver

Model-builder

graphical ODE simulator

Mumps-test

Example/test binaries using MUMPS

Nauty

library for graph automorphisms -- interface and tools

Netgen

Automatic 3d tetrahedral mesh generator

Normaliz

math computing tools for affine monoids, rational polytopes and cones

Octave

GNU Octave language for numerical computations

Palp

Package for Analyzing Lattice Polytopes

Pari-gp

PARI/GP Computer Algebra System binaries

Persalys

GUI for uncertainty treatment and variabilities management

Phcpack

general-purpose solver for polynomial systems (command line)

Planarity

Program for planarity-related graph algorithms

Polylib-utils

Various tools using libpolylib

Proofgeneral

generic frontend for proof assistants

Prover9

theorem prover and countermodel generator

Pyomo

PYthon Optimization Modeling Objects

Python3-deap

Distributed Evolutionary Algorithms in Python3

Python3-dolfin

Base Python interface for DOLFIN (Python 3)

Python3-ffc

compiler for finite element variational forms (Python 3)

Python3-minieigen

Wrapper of parts of the Eigen library (Python 3)

Python3-openturns

Python3 front-end of OpenTURNS (aka TUI)

Python3-persalys

GUI for uncertainty treatment (Python bindings)

Python3-sagenb-export

Convert SageNB Notebooks (Python 3)

Python3-ufl

unified language for form-compilers (Python 3)

Qepcad

quantifier elimination tool

Qhull-bin

calculate convex hulls and related structures (utilities)

Qsopt-ex

Exact linear programming solver

Regina-normal

mathematical software for low-dimensional topology

Rheolef

efficient Finite Element environment

Rubiks

Small collection of Rubik's cube solvers

Sagemath

Open Source Mathematical Software

Sagemath-database-conway-polynomials

Database of Conway polynomials

Sagemath-database-cremona-elliptic-curves

Databases of elliptic curves over the rationals

Sagemath-database-elliptic-curves

Databases for elliptic curves

Sagemath-database-graphs

Databases of graphs

Sagemath-database-mutually-combinatorial-designs

Databases of combinatorial designs

Sagemath-database-polytopes

Databases of polytopes

Science-statistics

Debian Science Statistics packages

Scilab

Scientific software package for numerical computations

Scilab-ann

Scilab module for artificial neural networks

Scotch

programs and libraries for graph, mesh and hypergraph partitioning

Singular

Computer Algebra System for Polynomial Computations

Snappea

program for creating and studying hyperbolic 3-manifolds

Surf-alggeo

visualization of real algebraic geometry

Sympow

mathematical program for SYMmetric POWer elliptic curve L-functions -- program

Tachyon

Parallel/Multiprocessor Standalone Ray Tracer - metapackage

Tetgen

Quality Tetrahedral Mesh Generator

Topcom

Triangulations Of Point Configurations and Oriented Matroids

Toulbar2

Exact combinatorial optimization for Graphical Models

Wxmaxima

GUI for the computer algebra system Maxima

Xcas

Computer Algebra System - console and graphical calculator

Xmaxima

Computer algebra system -- x interface

Xmds

eXtensible Multi-Dimensional Simulator

Xmds2

eXtensible Multi-Dimensional Simulator

Official Debian packages with lower relevance

Ann-tools

Approximate Nearest Neighbor Searching library (tools)

Evolver-nox

Surface Evolver - with no X support

Evolver-ogl

Surface Evolver - with OpenGL display

Gap-gapdoc

GAPDoc - A Meta Package for GAP Documentation

Gap-io

low level C library IO bindings for GAP

Gap-online-help

GAP computer algebra system, online help

Gap-scscp

SCSCP protocol in GAP

Gmp-ecm

Factor integers using the Elliptic Curve Method

Libspectra-dev

library for large scale eigenvalue problems (development files)

Netgen-doc

Automatic 3d tetrahedral mesh generator documentation

Primesieve

fast prime number generator C/C++ library

R-cran-evd

GNU R Functions for extreme value distributions

Sagetex

Embed Sage code and plots into LaTeX

Debian packages in contrib or non-free

Matlab-support

distro integration for local MATLAB installations

Packaging has started and developers might try the packaging code in VCS

Isabelle

generic theorem proving environment

Unofficial packages built by somebody else

Octaviz

3D visualization system for Octave

Mathematics-dev - Debian Science Mathematics-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Mathematics.

You might also be interested in the science-mathematics metapackage.

Official Debian packages with high relevance

Code-saturne-bin

General purpose Computational Fluid Dynamics (CFD) software - binaries

Code-saturne-include

General purpose Computational Fluid Dynamics (CFD) software - includes

Coinor-libcoinmp-dev

Simple C API for COIN-OR Solvers Clp and Cbc -- development

Cppad

Automatic Differentiation of C++ algorithms, dummy package

Fenics

Automated Solution of Differential Equations

Fflas-ffpack

Finite field linear algebra subroutines/package

Fftw-dev

library for computing Fast Fourier Transforms

Gap-dev

GAP computer algebra system, compiler and development files

Jel-java

Library for evaluating algebraic expressions in Java

Libalglib-dev

Development files for the alglib library

Libann-dev

Approximate Nearest Neighbor Searching library (development files)

Libarmadillo-dev

streamlined C++ linear algebra library - Headers

Libarpack++2-dev

Object-oriented version of the ARPACK package (development)

Libarpack2-dev

Fortran77 subroutines to solve large scale eigenvalue problems (development)

Libatlas-base-dev

Automatically Tuned Linear Algebra Software, generic static

Libbasix-dev

Finite Element Basis Function Definition Runtime Library (development headers)

Libblas-dev

Basic Linear Algebra Subroutines 3, static library

Libblis-dev

BLAS-like Library Instantiation Software Framework (dev,32bit,meta)

Libblitz0-dev

C++ template class library for scientific computing - libdev

Libbraiding-dev

computations on braid groups (development files)

Libbrial-dev

polynomials over Boolean Rings, core development files

Libcdd-dev

Library for finding vertices of convex polytopes, development

Libcgal-dev

C++ library for computational geometry (development files)

Libcminpack-dev

Nonlinear equations and nonlinear least squares problems - development

Libcneartree-dev

Library and headers for solving the Nearest Neighbor Problem

Libcombblas-dev

an extensible parallel graph library for graph analytics

Libcqrlib-dev

Library and headers for quaternion arithmetic and rotation math

Libcvector-dev

ANSI C implementation of dynamic arrays (development files)

Libdeal.ii-dev

Differential Equations Analysis Library - development files

Libdogleg-dev

Powell's dog-leg nonlinear least squares solver for sparse matrices

Libdolfinx-dev

Shared links and header files for DOLFIN

Libdouble-conversion-dev

routines to convert IEEE floats to and from strings (development files)

Libdune-grid-dev

toolbox for solving PDEs -- grid interface (development files)

Libec-dev

Library for modular symbols and elliptic curves over Q (development)

Libecm-dev

dummy package

Libeigen3-dev

lightweight C++ template library for linear algebra

Libfeel++-dev

A library for the finite element method

Libfftw3-dev

Library for computing Fast Fourier Transforms - development

Libflame-dev

High-performance object-based library for DLA computations (dev)

Libflann-dev

Fast Library for Approximate Nearest Neighbors - development

Libflint-arb-dev

??? missing short description for package libflint-arb-dev :-(

Libflint-dev

C library for number theory, development files

Libfplll-dev

Library for LLL-reduction of Euclidean lattices, development

Libfreefem++-dev

Provides the development files of the FreeFem++ FE suite

Libfreefem-dev

Development library, header files and manpages

Libfrobby-dev

Computations with monomial ideals (development tools)

Libgemmlowp-dev

small self-contained low-precision GEMM library

Libgf2x-dev

Routines for fast arithmetic in GF(2)[x] (development files)

Libgivaro-dev

arithmetic and algebraic computations - development files

Libglpk-dev

linear programming kit - development files

Libglpk-java

Java binding to the GNU Linear Programming Kit

Libgnuplot-iostream-dev

C++ programming interface for gnuplot. Headers

Libgsl0-dev

GNU Scientific Library (GSL) -- development package

Libhomfly-dev

compute the homfly polynomial of a link (development files)

Libhypre-dev

High Performance Matrix Preconditioners - Development Files

Libigraph-dev

library for creating and manipulating graphs - development files

Libiml-dev

Integer Matrix Library, development files

Libitsol-dev

ITerative SOLvers - devel

Libjama-dev

C++ Linear Algebra Package

Libjgrapht0.6-java

mathematical graph theory library for Java

Libjgrapht0.8-java

mathematical graph theory library for Java

Liblapack-dev

Library of linear algebra routines 3 - static version

Liblbfgs-dev

L-BFGS solver for unconstrained nonlinear optimization problems

Liblfunction-dev

development files for liblfunction

Liblibleidenalg-dev

implementation of the Leiden algorithm in C++ - headers

Liblinbox-dev

Library for exact linear algebra - development files

Liblip-dev

reliable interpolation of multivariate scattered data

Liblrcalc-dev

library for calculating Littlewood-Richardson coefficients - development files

Libm4ri-dev

Method of the Four Russians Inversion library, development files

Libm4rie-dev

extended Method of the Four Russians Inversion library, development files

Libmadlib-dev

mesh adaptation library

Libmatheval-dev

GNU library for evaluating symbolic mathematical expressions (development)

Libmathic-dev

C++ library for Groebner basis computation (developer tools)

Libmathicgb-dev

Compute Groebner bases (developer tools)

Libmatio-dev

MATLAB MAT File I/O Library - development files

Libmeschach-dev

development files for meschach

Libmeshsdfilter-dev

Static/Dynamic Filtering for Mesh Geometry

Libmpfi-dev

multiple precision floating-point interval computation library -- libdev

Libmpfrc++-dev

multi-precision floating point number class for C++

Libmps-dev

Multiprecision polynomial solver (development)

Libmuparser-dev

fast mathematical expressions parse library (development)

Libnauty2-dev

??? missing short description for package libnauty2-dev :-(

Libnewmat10-dev

matrix manipulations library (C++ headers files)

Libnfft3-dev

development files for the NFFT library

Libnglib-dev

Automatic 3d tetrahedral mesh generator development files

Libopenblas-dev

Optimized BLAS (linear algebra) library (dev, meta)

Libopenmesh-dev

Tools for representing and manipulating polygonal meshes

Libopenturns-dev

headers and development libraries for OpenTURNS

Libortools-dev

Google Optimization Tools (development files)

Libp4est-dev

Algorithms for Parallel Adaptive Mesh Refinement - development files

Libparsington-java

mathematical expression parser for Java

Libplb-dev

CFD solver based on the lattice Boltzmann method. Development files

Libpolybori-dev

polynomials over Boolean Rings, core development files

Libpolybori-groebner-dev

development files for libpolybori-groebner

Libprimesieve-dev

fast prime number generator C/C++ library -- libdev

Libpynac-dev

Engine for symbolic geometric calculus for Python (development files)

Libqcustomplot-dev

Qt C++ widget for plotting - header

Libqd-dev

Double-double and quad double types in C++ and F90

Libqhull-dev

calculate convex hulls and related structures (development files)

Libqsopt-ex-dev

Exact linear programming solver -- development files

Libquadrule-dev

Development files for quadrule

Libranlip-dev

generates random variates with multivariate Lipschitz density

Libratpoints-dev

development files for libratpoints

Librw-dev

Compute rank-width and rank-decompositions of graphs (development)

Libsaclib-dev

library of C programs for computer algebra (development)

Libscscp1-dev

IMCCE SCSCP C Library -- development package

Libscythestat-dev

header files for Scythe statistics library

Libsleef-dev

SLEEF Vectorized Math Library (development)

Libsopt-dev

Development package for Sparse OPTimisation library

Libsparskit-dev

basic tool-kit for sparse matrix computations - devel

Libspfft-dev

Sparse 3D FFT library with MPI, OpenMP, CUDA / ROCm support (development files)

Libspooles-dev

SPOOLES SParse Object Oriented Linear Equations Solver development files

Libstopt-dev

library for stochastic optimization problems (development package)

Libstxxl-dev

Development libraries for STXXL

Libsuitesparse-dev

libraries for sparse matrices computations (development files)

Libsuperlu-dev

Direct solution of large, sparse systems of linear equations

Libsuperlu-dist-dev

Highly distributed solution of sparse linear equations

Libsymmetrica2-dev

transitional package

Libtachyon-dev

Parallel/Multiprocessor Ray Tracing Software, development files

Libtnt-dev

interface for scientific computing in C++

Libug-dev

software framework for finite element methods (development files)

Libvdt-dev

vectorised math library - development files

Libviennacl-dev

Scientific computing library written in C++ based on OpenCL

Libxsmm-dev

Library for matrix operations and deep learning primitives

Libzn-poly-dev

development files for libzn-poly

Minpack-dev

nonlinear equations and nonlinear least squares static library

Petsc-dev

Virtual package depending on latest PETSc development package

Python3-asteval

minimalistic evaluator of Python 3 expression using ast module

Python3-basix

Finite Element Basis Function Definition Runtime Library (Python 3)

Python3-brial

polynomials over Boolean Rings, Python 3 module

Python3-bumps

data fitting and Bayesian uncertainty modeling for inverse problems (Python 3)

Python3-cryptominisat

Python bindings for the CryptoMiniSat SAT solver (Python 3)

Python3-cvxopt

Python3 package for convex optimization

Python3-cypari2

Python interface to PARI -- Python 3

Python3-cython-blis

Fast BLAS-like operations from Python and Cython, without the tears (Python 3)

Python3-dmsh

High-quality 2D mesh generator based on distmesh

Python3-dolfin

Base Python interface for DOLFIN (Python 3)

Python3-dolfinx

Python interface for DOLFIN (Python 3)

Python3-dtcwt

Dual-Tree Complex Wavelet Transform library for Python 3

Python3-ffc

compiler for finite element variational forms (Python 3)

Python3-ffcx

next-gen compiler for finite element variational forms (Python 3)

Python3-gimmik

generator of matrix multiplication kernels (Python 3)

Python3-gpyfft

Wrapper for the OpenCL FFT library clFFT (Python 3)

Python3-linop

Linear mathematical operators in Python (Python 3)

Python3-ltfatpy

Large Time-Frequency Toolbox (LTFAT) in Python

Python3-meshplex

fast tools for simplex meshes (Python 3)

Python3-meshzoo

simple geometric meshes (Python 3)

Python3-morfessor

unsupervised and semi-supervised morphological segmentation

Python3-mpi4py-fft

a Python package for computing Fast Fourier Transforms (FFTs) with MPI

Python3-numexpr

Fast numerical array expression evaluator for Python 3 and NumPy

Python3-numpy

Fast array facility to the Python language (Python 3)

Python3-openturns

Python3 front-end of OpenTURNS (aka TUI)

Python3-optlang

sympy based mathematical programming language (Python 3)

Python3-ortools

Google Optimization Tools (Python library)

Python3-petsc4py

Python 3 bindings for PETSc libraries

Python3-pyemd

Python library for the Earth Mover's Distance with NumPy

Python3-pyfftw

Pythonic wrapper around FFTW - Python 3

Python3-pynfft

Python bindings for the NFFT3 library - Python 3

Python3-pyviennacl

Python bindings for ViennaCL linear algebra library (for Python 3)

Python3-slepc4py

Python 3 bindings for SLEPc libraries

Python3-stopt

library for stochastic optimization problems (Python 3 bindings)

Python3-swiglpk

Plain Python bindings for the GNU Linear Programming Kit (Python 3)

Python3-ufl

unified language for form-compilers (Python 3)

Sfftw-dev

library for computing Fast Fourier Transforms

Slepc-dev

Scalable Library for Eigenvalue Problem Computations

Trilinos-all-dev

object-oriented framework for large-scale problems - development files (ALL)

Veccore-dev

simple abstraction layer on top of other vectorization libraries

Official Debian packages with lower relevance

Cfortran

Header file permitting Fortran routines to be called in C/C++

Fflas-ffpack-dev-doc

FFLAS-FFPACK Developer Documentation

Fflas-ffpack-user-doc

FFLAS-FFPACK User Documentation

Givaro-dev-doc

Developer Documentation for Givaro (obsolete)

Givaro-user-doc

User Documentation for Givaro (obsolete)

Jsurf-alggeo

Java based visualization library for real algebraic geometry

Libbdd-dev

Binary decision-diagram library (development)

Libdune-functions-dev

toolbox for solving PDEs -- interface for functions (development files)

Libdune-grid-glue-dev

toolbox for solving PDEs -- compute couplings between grids (development files)

Libdune-istl-dev

toolbox for solving PDEs -- iterative solvers (development files)

Libdune-localfunctions-dev

toolbox for solving PDEs -- local basis (development files)

Libdune-pdelab-dev

toolbox for solving PDEs -- discretization module (development files)

Libdune-typetree-dev

toolbox for solving PDEs -- typed tree template library (development files)

Libdune-uggrid-dev

software framework for finite element methods (development files)

Libitpp-dev

C++ library of signal processing and communication routines: Headers

Libjlapack-java

LAPACK numerical subroutines translated from their Fortran 77 source

Liblrs-dev

package to enumerate vertices and extreme rays (development file)

Libmtj-java

Java library for developing numerical applications

Libnetlib-java

collection of mission-critical software components for linear algebra systems

Libqrupdate-dev

Fast updates of QR and Cholesky decompositions -- static library

Libsollya-dev

library for safe floating-point code development -- libdev

Libtet1.5-dev

Quality Tetrahedral Mesh Generator

Openturns-examples

examples of OpenTURNS functionalities

Python3-msgpack-numpy

serialize numpy arrays using msgpack

Python3-numpy-groupies

performs operations on/with subsets of n-dim arrays

Python3-threadpoolctl

Python helpers for common threading libraries (BLAS, OpenMP)

Sollya

library for safe floating-point code development -- tool

Debian packages in contrib or non-free

Libamgcl-dev

Solves large sparse linear systems with algebraic multigrid method

Libmagma-dev

Matrix Algebra on GPU and Multicore Architectures (dev)

Libmkl-full-dev

Intel® Math Kernel Library (Intel® MKL) (Full Version Dev)

Libparmetis-dev

Parallel Graph Partitioning and Sparse Matrix Ordering Libs: Devel

Libsuitesparse-metis-dev

collection of libraries for computations for sparse matrices

Libtestu01-0-dev

testing suite for uniform random number generators -- libdevel

Python3-amgcl

Solves large sparse linear systems with algebraic multigrid method

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev

Basic Linear Algebra Subroutines 3, static library

Libgismo-dev

Geometry plus simulatiom modules development files

Liblevmar-dev

Levenberg-Marquardt nonlinear least squares algorithm (devel)

Meteorology - Debian Science Meteorology packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Meteorology and Climate.

Official Debian packages with high relevance

Cdftools

Diagnostic tools for NEMO netCDF output

Cdo

Climate Data Operators

Cmor-tables

MIP tables for the Climate Model Output Rewriter library

Coda

Common Data Access framework for Earth science

Cylc-flow

Workflow scheduler

Dballe

Database for punctual meteorological data (Command line tools)

Ferret-vis

Interactive data visualization and analysis environment

Flexpart

Particle Dispersion model for tracing air transport phenomena

Flextra

Trajectory model for tracing air transport phenomena

Fpzip-utils

FP array compression library - tools

Grads

Grid Analysis and Display System for earth science data

Harp

Data harmonization toolset for Earth Observation formats

Libaec-tools

??? missing short description for package libaec-tools :-(

Libatlas-ecmwf-utils

Numerical weather prediction and climate modelling library - utilities

Libdap-bin

Binaries for the libdap Data Access Protocol library

Libdap-doc

Documentation for the libdap Data Access Protocol library

Libeccodes-tools

GRIB decoding/encoding software (utilities)

Libeckit-utils

C++ toolkit for ECMWF tools and applications - development files

Libemos-bin

ECMWF Interpolation Library - binaries

Libfckit-utils

Library Fortran toolkit for interoperating Fortran with C/C++

Libmetkit-utils

Utilities for the MetKit MARS access library

Magics++

Executables for the magics++ library

Mbdyn

multibody analysis code

Metview

Interactive data visualization and analysis environment,

Ncl-ncarg

NCAR Command Language and NCAR graphics

Nco

Command-line operators to analyze netCDF files

Ncview

X11 visual browser for NetCDF format files

Odc

Tools for the Observational Data Processing (ODB)

Python3-cdo

Python3 module for Climate Data Operators

Python3-cfgrib

Python 3 module supporting the CF convention in GRIB files

Python3-cmor

Python3 interface to CMOR

Python3-drslib

Library for processing the CMIP5 Data Reference Syntax (Python3)

Python3-eccodes

Python 3 module Python interface to the ecCodes BUFR and GRIB de/encoder

Python3-ferret

Python3 wrapper for the Ferret visualization and analysis environment,

Python3-grib

Python 3 module for reading and writing GRIB files

Python3-gsw

Python 3 implementation of the Thermodynamic Equation of Seawater

Python3-iapws

Python3 implementation of the international APWS-IF97 steam tables

Python3-magics++

Python3 support for Magics++

Python3-metaconfig

Python ConfigParser bootstrapping library (Python3)

Python3-netcdf4

Python 3 interface to the netCDF4 (network Common Data Form) library

Python3-sphere

Python3 interface to the spherepack scientific library.

Xygrib

Weather data visualization, GRIB file viewer

Official Debian packages with lower relevance

Gerris

Fluid Flow Solver

Gnudatalanguage

Free IDL compatible incremental compiler

Octave-octcdf

NetCDF data files interface for Octave

Paraview

Parallel Visualization Application

Python3-openturns

Python3 front-end of OpenTURNS (aka TUI)

R-base

GNU R statistical computation and graphics system

No known packages available but some record of interest (WNPP bug)

Geonetwork

Catalog application to manage spatially referenced resources through the web

Meteorology-dev - Debian Science Meteorology-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Meteorology and Climate.

You might also be interested in the science-meteorology metapackage.

Official Debian packages with high relevance

Ecbuild

Build system for ECMWF software

Fcm

Flexible Configuration Manager

Fftw-dev

library for computing Fast Fourier Transforms

Libaec-dev

Development files for the Adaptive Entropy Coding library

Libatlas-ecmwf-dev

Numerical weather prediction and climate modelling library - dev files

Libblas-dev

Basic Linear Algebra Subroutines 3, static library

Libcdi-dev

Development files for the climate data interface library

Libcmor-dev

Development files for Climate Model Output Rewriter

Libcoarrays-dev

Co-Array Fortran libraries

Libcoda-dev

Development files for the CODA framework for Earth sciences

Libcoda-java

Java interface for Common Data Access Framework

Libdap-dev

Development files (headers and static libraries) for libdap

Libeccodes-dev

GRIB and BUFR decoding/encoding software library (development)

Libeccodes-tools

GRIB decoding/encoding software (utilities)

Libeckit-dev

C++ toolkit for ECMWF tools and applications

Libemos-dev

ECMWF Interpolation Library - development

Libfckit-dev

Fortran toolkit for interoperating Fortran with C/C++

Libfftw3-dev

Library for computing Fast Fourier Transforms - development

Libfftw3-doc

Documentation for fftw version 3

Libfpzip-dev

Development files for the FP array compression library

Libgadap-dev

Development and static libraries for GADAP

Libgctp-dev

General Cartographic Transformation Package - development files

Libgrib2c-dev

NCEP GRIB2 library - development files

Libhdfeos-dev

Development files for the HDF-EOS4 library

Libhe5-hdfeos-dev

Development files for the HDF-EOS5 library

Liblapack-dev

Library of linear algebra routines 3 - static version

Liblapack-doc

Library of linear algebra routines 3 - documentation

Liblas-dev

ASPRS LiDAR data translation library - C++ development files

Libmagics++-dev

Development files for ECMWF plotting software MAGICS++

Libmbc-dev

multibody analysis code (development files)

Libmetkit-dev

Development files for the Metkit toolkit

Libncarg-bin

NCAR command-language library - development tools

Libnetcdf-dev

creation, access, and sharing of scientific data

Liboasis3-dev

Development files for OASIS3 climate model coupler

Libodc-dev

Observational Data processing for meteorology

Libopenturns-dev

headers and development libraries for OpenTURNS

Libproj-dev

Cartographic projection library (development files)

Librsl-dev

Development files for RSL

Libspfft-dev

Sparse 3D FFT library with MPI, OpenMP, CUDA / ROCm support (development files)

Libsphere-dev

Development files for Spherepack scientific library

Libterralib-dev

C++ library for Geographical Information Systems -- development package

Libudunits2-dev

Development files for the libunits physical units package

Libwreport-dev

library for working with weather reports

Makedepf90

Fortran-90 dependency processor for Makefiles

Netcdf-bin

Programs for reading and writing NetCDF files

Python3-coda

Python3 interface for CODA science formats library

Python3-esda

Exploratory Spatial Data Analysis

Python3-gpyfft

Wrapper for the OpenCL FFT library clFFT (Python 3)

Python3-openturns

Python3 front-end of OpenTURNS (aka TUI)

Python3-pyfftw

Pythonic wrapper around FFTW - Python 3

Python3-pyswarms

research toolkit for particle swarm optimization in Python

Python3-sasmodels

Theoretical models for small angle scattering (Python 3)

Python3-ulmo

Simple & fast Python 3 access to public hydrology & climatology data

R-cran-rnetcdf

GNU R package that provides an R interface to NetCDF datasets

Sfftw-dev

library for computing Fast Fourier Transforms

Wcslib-dev

Header files and static library for wcslib and pgsbox

Wcslib-doc

API documentation for wcslib

Official Debian packages with lower relevance

Gfortran

GNU Fortran 95 compiler

Ksh

transitional package

Libfeel++-dev

A library for the finite element method

Openturns-examples

examples of OpenTURNS functionalities

Pkg-config

manage compile and link flags for libraries (transitional package)

Python3-coards

COARDS-compliant time parser (Python 3)

Python3-threadpoolctl

Python helpers for common threading libraries (BLAS, OpenMP)

Udunits-bin

Utility for handling units of physical quantities

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev

Basic Linear Algebra Subroutines 3, static library

Nanoscale physics - Debian Science Nanoscale Physics packages

This metapackage will install Debian Science packages related to Nanoscale Physics, which corresponds to the study of physical systems typically ranging from 1 to 100 nm in size. The properties of such systems usually depend on the number of atoms they are made of, while this number is still relatively large for an accurate description.

The nanoscale is the meeting point of classical and quantum physics. Previous research efforts were considering either smaller systems, for which everybody could develop their own methods and software independently, or much bigger systems, for which it was clearly impossible to provide a fine-grained description. Addressing the issues raised by the nanoscale requires however cooperative and coordinated efforts in a multidisciplinary context. This metapackage is part of such an endeavor.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Official Debian packages with high relevance

Abinit

package for electronic structure calculations

Ase

Atomic Simulation Environment

Avogadro

Molecular Graphics and Modelling System

Binoculars

Surface X-ray diffraction 2D detector data reduction

Cadabra

??? missing short description for package cadabra :-(

Cbflib-bin

utilities to manipulate CBF files

Cif-linguist

transform CIF data among CIF formats and dialects

Cod-tools

tools for manipulating CIF format files

Cp2k

Ab Initio Molecular Dynamics

Drawxtl

crystal structure viewer

Etsf-io

Binary tools to check, merge and read ETSF files

Feynmf

set of LaTeX macros for creating Feynman diagrams

Finalcif

editor for Crystallographic Information Format

Fityk

general-purpose nonlinear curve fitting and data analysis

Garlic

visualization program for biomolecules

Gdis

molecular and crystal model viewer

Ggobi

Data visualization system for high-dimensional data

Ghemical

GNOME molecular modelling environment

Gnuplot

Command-line driven interactive plotting program.

Gpaw

DFT and beyond within the projector-augmented wave method

Gperiodic

periodic table application

Grace

XY graphing and plotting tool

Graphviz

rich set of graph drawing tools

Gsl-bin

GNU Scientific Library (GSL) -- binary package

Gwyddion

Scanning Probe Microscopy visualization and analysis tool

Libblas3

Basic Linear Algebra Reference implementations, shared library

Libgsl0ldbl

GNU Scientific Library (GSL) -- library package

Liblapack3

Library of linear algebra routines 3 - shared version

Libssm-bin

macromolecular superposition library - binaries

Mayavi2

scientific visualization package for 2-D and 3-D data

Mpich

Implementation of the MPI Message Passing Interface standard

Mpqc

Massively Parallel Quantum Chemistry Program

Nco

Command-line operators to analyze netCDF files

Ncview

X11 visual browser for NetCDF format files

Netcdf-bin

Programs for reading and writing NetCDF files

Nexus-tools

NeXus scientific data file format - applications

Octave

GNU Octave language for numerical computations

Openkim-models

Models and model-drivers for KIM-API

Openmpi-bin

high performance message passing library -- binaries

Openmx

package for nano-scale material simulations

Psi3

Quantum Chemical Program Suite

Python3-lmfit

Least-Squares Minimization with Constraints (Python 3)

Python3-scipy

scientific tools for Python 3

Python3-sympy

Computer Algebra System (CAS) in Python (Python 3)

Pyxplot

data plotting program producing publication-quality output

Quantum-espresso

Electronic-Structure and Ab-Initio Molecular Dynamics Suite

Sasview

Small Angle Scattering Analysis suite

Science-numericalcomputation

Debian Science Numerical Computation packages

Scilab

Scientific software package for numerical computations

Udav

library for scientific graphs (window interface)

V-sim

Visualize atomic structures

Voronota

Voronoi diagram-based tool to find atom contacts

Official Debian packages with lower relevance

Axiom

General purpose computer algebra system: main binary and modules

Dx

OpenDX (IBM Visualization Data Explorer) - main package

Dx-doc

OpenDX (IBM Visualization Data Explorer) - documentation

Dxsamples

Sample programs for the OpenDX Data Explorer

Feel++-apps

A library for the finite element method

Gpiv

GUI program for Particle Image Velocimetry

Gpivtools

command line programs for Particle Image Velocimetry

Hdf5-helpers

HDF5 - Helper tools

Hdf5-tools

HDF5 - Runtime tools

Libgraphviz-perl

Perl interface to the GraphViz graphing tool

Maxima

Computer algebra system -- base system

Mpich-doc

Documentation for MPICH

Netcdf-doc

Documentation for NetCDF

Openmpi-doc

high performance message passing library -- man pages

Pymca

Applications and toolkit for X-ray fluorescence analysis -- scripts

Python3-pygraphviz

Python interface to the Graphviz graph layout and visualization package (Python 3)

Qtiplot

data analysis and scientific plotting

Scidavis

application for scientific data analysis and visualization

Science-mathematics

Debian Science Mathematics packages

Science-statistics

Debian Science Statistics packages

Packaging has started and developers might try the packaging code in VCS

Fdmnes

calculates spectra of different spectroscopies

Unofficial packages built by somebody else

Octaviz

3D visualization system for Octave

No known packages available but some record of interest (WNPP bug)

Exciting

All-electron full-potential electronic-structure code

No known packages available

Ape

Atomic pseudopotential generator

Atompaw

PAW atomic dataset generator

Bigdft

Wavelet-based electronic-structure calculations

Liblevmar-2-6

Levenberg-Marquardt nonlinear least squares algorithms

Octopus

Real-space TDDFT-based electronic-structure code

Wannier90-1

Maximally Localized Wannier Functions

Wannier90-2

Maximally Localized Wannier Functions

Nanoscale physics development - Debian Science Nanoscale Physics development packages

This metapackage will install Debian Science packages which might be helpful for the development of applications for Nanoscale Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the nanoscale-physics, physics and education-physics metapackages.

Official Debian packages with high relevance

Abinit-doc

package for electronic structure calculations (Documentation)

Gsl-bin

GNU Scientific Library (GSL) -- binary package

Libblas-dev

Basic Linear Algebra Subroutines 3, static library

Libcbf-dev

development files for CBFlib

Libccp4-dev

CCP4 core functionality - development files

Libcctbx-dev

Computational Crystallography Toolbox - headers

Libcexceptions-dev

C exception handling library (development files)

Libclipper-dev

object oriented development kit for crystallographic computing

Libcod-precision-perl

COD precision handling module for Perl language

Libcoordgen-dev

2D coordinate generation for chemical compounds - header files

Libetsf-io-dev

Static libraries and Fortran module files of ETSF_IO

Libetsf-io-doc

Developer documentation API and tutorials for ETSF_IO

Libfftw3-dev

Library for computing Fast Fourier Transforms - development

Libgsl0-dev

GNU Scientific Library (GSL) -- development package

Libhdf5-dev

HDF5 - development files - serial version

Libhepmc3-dev

Event Record for Monte Carlo Generators - development files

Libkim-api-dev

Development files for KIM-API

Liblapack-dev

Library of linear algebra routines 3 - static version

Liblapack-doc

Library of linear algebra routines 3 - documentation

Libmaeparser-dev

Development files to parse Schrödinger Maestro files

Libmctc-lib-dev

modular computation tool chain library (development files)

Libmmdb2-dev

macromolecular coordinate library - development files

Libmpich-dev

Development files for MPICH

Libncrystal-dev

Monte Carlo simulations of neutrons in crystals (dev files)

Libnetcdf-dev

creation, access, and sharing of scientific data

Libnexus-dev

NeXus scientific data file format - development libraries

Libnexus-java

NeXus scientific data file format - java libraries

Liboce-ocaf-dev

??? missing short description for package liboce-ocaf-dev :-(

Liboce-visualization-dev

??? missing short description for package liboce-visualization-dev :-(

Libopenmpi-dev

high performance message passing library -- header files

Libroot-math-mlp-dev

Multi layer perceptron extension for ROOT - development files

Libroot-montecarlo-vmc-dev

Virtual Monte-Carlo library for ROOT - development files

Libroot-tmva-dev

Toolkit for multivariate data analysis - development files

Libscalapack-mpi-dev

Scalable Linear Algebra Package - Dev files for MPI

Libsis-jhdf5-java

easy-to-use HDF library for Java

Libspfft-dev

Sparse 3D FFT library with MPI, OpenMP, CUDA / ROCm support (development files)

Libssm-dev

macromolecular superposition library - development files

Libsymspg-dev

C library for crystal symmetry determination (development files)

Libufo-dev

Library for high-performance, GPU-based computing - devel

Libxc-dev

Library of Exchange-Correlation Functionals (development files)

Netcdf-doc

Documentation for NetCDF

Pyfai

Fast Azimuthal Integration scripts

Python3-binoculars

Surface X-ray diffraction 2D detector data reduction - Python3

Python3-cctbx

Python Toolbox for crystallography

Python3-cif2cell

prepare CIF files for electronic structure calculations

Python3-fabio

I/O library for images produced by 2D X-ray detector - Python3

Python3-gpyfft

Wrapper for the OpenCL FFT library clFFT (Python 3)

Python3-nxs

NeXus scientific data file format - Python 3 binding

Python3-periodictable

Extensible periodic table of the elements (Python 3)

Python3-pycodcif

error-correcting CIF parser - Python3 bindings

Python3-pyfftw

Pythonic wrapper around FFTW - Python 3

Python3-qutip

python package for simulating the dynamics of open quantum systems

Python3-sasdata

Data file handling for small-angle scattering (Python 3)

Python3-sasmodels

Theoretical models for small angle scattering (Python 3)

R-cran-rnetcdf

GNU R package that provides an R interface to NetCDF datasets

Root-system

metapackage to install all ROOT packages

Scalapack-doc

Scalable Linear Algebra Package Documentation

Science-mathematics-dev

Debian Science Mathematics-dev packages

Ufo-filters

Set of plugins for ufo-core - runtime

Vecgeom-dev

geometry library for particle-detector simulation - development files

Official Debian packages with lower relevance

Libfeel++-dev

A library for the finite element method

Libfftw3-doc

Documentation for fftw version 3

Oce-draw

??? missing short description for package oce-draw :-(

Python3-h5py

general-purpose Python interface to hdf5

Python3-netcdf4

Python 3 interface to the netCDF4 (network Common Data Form) library

Python3-threadpoolctl

Python helpers for common threading libraries (BLAS, OpenMP)

Debian packages in contrib or non-free

Gsl-doc-info

GNU Scientific Library (GSL) Reference Manual in info

Gsl-doc-pdf

GNU Scientific Library (GSL) Reference Manual in pdf

Gsl-ref-html

GNU Scientific Library (GSL) Reference Manual in html

Gsl-ref-psdoc

GNU Scientific Library (GSL) Reference Manual in postscript

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev

Basic Linear Algebra Subroutines 3, static library

No known packages available

Libpspio-dev

Library to read and write pseudopotentials

Wannier90-1-dev

Maximally Localized Wannier Functions - Development files

Cognitive neuroscience - Debian Science packages for Cognitive Neuroscience

This metapackage will install Debian packages which might be useful for scientists doing cognitive neuroscience research. This comprises the full research process from conducting psychophysical experiments, over data acquisition and analysis, to visualization and typesetting of scientific results.

The selection of packages is targeting the application of analysis techniques. Methods developers are referred to the science-statistics, science-imageanalysis, science-numericalcomputation, med-imaging, and med-imaging-dev metapackages for a variety of additional software that might be useful in the context of cognitive neuroscience.

Official Debian packages with high relevance

Amide

software for Medical Imaging

Caret

Computerized Anatomical Reconstruction and Editing Toolkit

Dicom3tools

DICOM medical image files manipulation and conversion tools

Dicomnifti

converts DICOM files into the NIfTI format

Fslview

viewer for (f)MRI and DTI data

Itksnap

semi-automatic segmentation of structures in 3D images

Medcon

Medical Image (DICOM, ECAT, ...) conversion tool

Minc-tools

MNI medical image format tools

Mriconvert

??? missing short description for package mriconvert :-(

Mricron

magnetic resonance image conversion, viewing and analysis

Nifti-bin

tools shipped with the NIfTI library

Nifti2dicom

convert 3D medical images to DICOM 2D series

Praat

program for speech analysis and synthesis

Psignifit

Fitting and testing hypotheses about psychometric functions

Python3-nibabel

Python3 bindings to various neuroimaging data formats

Python3-pydicom

DICOM medical file reading and writing (Python 3)

Python3-pyxnat

Interface to access neuroimaging data on XNAT servers

Python3-statsmodels

Python3 module for the estimation of statistical models

Qnifti2dicom

convert 3D medical images to DICOM 2D series (gui)

Voxbo

processing, statistical analysis, and display of brain imaging data

Xmedcon

Medical Image (DICOM, ECAT, ...) conversion tool (GUI)

Official Debian packages with lower relevance

Connectomeviewer

Interactive Analysis and Visualization for MR Connectomics

Python-mvpa2

multivariate pattern analysis with Python v. 2

Python3-bioxtasraw

process biological small angle scattering data

Science-psychophysics

Debian Science packages for Psychophysics

Science-typesetting

Debian Science typesetting packages

Debian packages in contrib or non-free

Fsl

transitional dummy package

Packaging has started and developers might try the packaging code in VCS

Bioimagesuite

integrated image analysis software suite

Debruijn

De Bruijn cycle generator

Freesurfer

analysis and visualization of functional brain imaging data

Openmeeg-tools

openmeeg library -- command line tools

Slicer

software package for visualization and image analysis - main application

Xnat

platform for data management and productivity tasks in neuroimaging

Unofficial packages built by somebody else

Eeglab

toolbox for processing and visualization of electrophysiological data

Mni-autoreg

MNI average brain (305 MRI) stereotaxic registration model

Mni-n3

MNI Non-parametric Non-uniformity Normalization

No known packages available but some record of interest (WNPP bug)

Fieldtrip

toolbox for MEG and EEG analysis

Pysurfer

visualize Freesurfer's data in Python

Spm8

analysis of brain imaging data sequences

No known packages available

Brainvisa

image processing factory for MR images

Hid

database management system for clinical imaging

Iqr

large-scale multi-level neuronal systems simulator

Neuroscience datasets - Debian Science packages for Neuroscience Datasets

This metapackage will install Debian packages that provide neuroscientific datasets. These datasets can be useful as common data files for applications (e.g. stereotaxic atlases), as example data for online tutorials or teaching, and as input data for analysis algorithms in demonstrations or test suites.

Packaging has started and developers might try the packaging code in VCS

Fsl-bangor-cerebellar-atlas

probabilistic atlas of the human cerebellum

Fsl-harvard-oxford-atlases

probabilistic atlas of human cortical brain areas (lateralized)

Fsl-jhu-dti-whitematter-atlas

human brain white-matter atlas

Fsl-juelich-histological-atlas

brain atlas based on cyto- and myelo-architectonic segmentations

Fsl-mni-structural-atlas

hand-segmented single-subject human brain atlas

Fsl-oxford-thalamic-connectivity-atlas

probabilistic brain atlas of thalamic white-matter connectivity

Fsl-talairach-daemon-atlas

structural anatomy labels of the Talairach atlas

Haxby2001-faceobject

face and object processing in ventral temporal cortex (fMRI)

Mclaren-rhesus-macaque-atlas

MRI-based brain atlas of the rhesus macaque monkey

Mni-colin27-nifti

Talairach stereotaxic space template

Sri24-atlas

MRI-based brain atlas of normal adult human brain anatomy

Unofficial packages built by somebody else

Mni-icbm152-nlin-2009

MNI stereotaxic space human brain template

Modeling of neural systems - Debian Science packages for modeling of neural systems

This metapackage will install Debian packages which might be useful for scientists interested in modeling of real neural systems at different levels (from single neuron to complex networks).

The selection of packages is targeting the application of simulation techniques. Methods developers are referred to the science-statistics, science-imageanalysis, science-numericalcomputation, med-imaging, and med-imaging-dev metapackages for a variety of additional software that might be useful for neuroscience research.

Official Debian packages with high relevance

Cnrun

NeuroML-capable neuronal network simulator

Neuron

Simulation environment for computational models of neurons

Python3-brian

simulator for spiking neural networks

Official Debian packages with lower relevance

Python3-pynn

simulator-independent specification of neuronal network models

Xppaut

Phase Plane Plus Auto: Solves many kinds of equations

Packaging has started and developers might try the packaging code in VCS

Nest

A simulator for networks of spiking neurons

No known packages available but some record of interest (WNPP bug)

Pcsim

simulator of heterogeneous networks of neurons and synapses

No known packages available

Invt

iLab Neuromorphic Vision C++ Toolkit

Moose

multiscale simulation environment for neuroscience

Numerical computation - Debian Science Numerical Computation packages

This metapackage will install Debian Science packages useful for numerical computation. The packages provide an array oriented calculation and visualisation system for scientific computing and data analysis. These packages are similar to commercial systems such as Matlab and IDL.

Official Debian packages with high relevance

Admesh

Tool for processing triangulated solid meshes. Binary

Algotutor

program for observing the intermediate steps of algorithm

Calculix-ccx

Three-Dimensional Structural Finite Element Program

Calculix-cgx

Calculix cgx is a 3-dimensional pre- and post-processor for fem

Coinor-cbc

Coin-or branch-and-cut mixed integer programming solver

Coinor-clp

Coin-or linear programming solver

Coinor-symphony

COIN-OR solver for mixed-integer linear programs

Esys-particle

Software for particle-based numerical modelling (MPI version)

Freemat

mathematics framework (mostly matlab compatible)

Gnudatalanguage

Free IDL compatible incremental compiler

Iep

transitional dummy package for IEP

Ipython3

Enhanced interactive Python 3 shell

Julia

high-performance programming language for technical computing

Lammps

Molecular Dynamics Simulator

Libadolc-dev

ADOLC development libs and headers

Libarrayfire-unified-dev

Development files for ArrayFire (unified backend)

Libceres-dev

nonlinear least squares minimizer (development files)

Libclblas-dev

development files for clBLAS

Libclfft-dev

development files for clFFT

Libclsparse-dev

development files for clSPARSE

Libcolpack-dev

Specialized graph vertex coloring library, development files

Libdune-grid-dev

toolbox for solving PDEs -- grid interface (development files)

Libopengm-dev

C++ template library for discrete factor graph models

Libppl-dev

Parma Polyhedra Library (development)

Libqsopt-ex-dev

Exact linear programming solver -- development files

Librsb-dev

shared-memory Sparse BLAS library using the RSB matrix format (development)

Libsleef-dev

SLEEF Vectorized Math Library (development)

Libsuitesparse-dev

libraries for sparse matrices computations (development files)

Libsundials-dev

Package providing everything for SUNDIALS dev work

Libtoon-dev

C++ numerics library designed for large numbers of small matrices

Libtoontag-dev

TooN Algorithm Library - development files

Liggghts

Open Source DEM Particle Simulation Software.

Metis

Serial Graph Partitioning and Fill-reducing Matrix Ordering. Binaries

Octave

GNU Octave language for numerical computations

Pdl

perl data language: Perl extensions for numerics

Psurface

piecewise linear bijections between triangulated surfaces -- utilities

Python3-arrayfire

ArrayFire bindings for Python 3

Python3-bitstring

Python module for manipulation of binary data (Python 3)

Python3-csa

Connection-Set Algebra (CSA) implemented in Python

Python3-deap

Distributed Evolutionary Algorithms in Python3

Python3-escript

Escript/Finley finite elements Python3 system (with OpenMP)

Python3-escript-mpi

(OpenMP + MPI)

Python3-guiqwt

efficient 2D data-plotting library - Python 3

Python3-lmfit

Least-Squares Minimization with Constraints (Python 3)

Python3-matplotlib

Python based plotting system in a style similar to Matlab (Python 3)

Python3-numpy

Fast array facility to the Python language (Python 3)

Python3-ppl

Python interface to PPL -- Python 3

Python3-pysph

Open-source framework for Smoothed Particle Hydrodynamics

Python3-pyswarms

research toolkit for particle swarm optimization in Python

Python3-resampy

Efficient signal resampling

Python3-rioxarray

rasterio xarray extension

Python3-scipy

scientific tools for Python 3

Python3-sfepy

Simple Finite Elements in Python

Python3-sparse

multidimensional sparse arrays for Python

Python3-tables

Hierarchical database for Python3 based on HDF5

Python3-theano

CPU/GPU math expression compiler for Python 3

Python3-woo

Discrete dynamic compuations, esp. granular mechanics (python 3)

Python3-xarray

N-D labeled arrays and datasets in Python 3

Pyzo

interactive editor for scientific Python

Qsopt-ex

Exact linear programming solver

R-base

GNU R statistical computation and graphics system

R-cran-nleqslv

GNU R package for solving systems of nonlinear equations

Scilab

Scientific software package for numerical computations

Scilab-ann

Scilab module for artificial neural networks

Sdpb

Semidefinite program solver

Spyder

Richly-featured Python IDE

Toulbar2

Exact combinatorial optimization for Graphical Models

Vitables

graphical tool to browse and edit PyTables and HDF5 files

Xtensor-dev

multi-dimensional arrays with broadcasting (transition package)

Yade

Platform for discrete element modeling

Yorick

interpreted language and scientific graphics

Official Debian packages with lower relevance

Calculix-ccx-doc

Three-Dimensional Structural Finite Element Program (documentation files)

Calculix-ccx-test

Three-Dimensional Structural Finite Element Program (documentation files)

Calculix-cgx-examples

Example files for Calculix GraphiX

Ceres-solver-doc

documentation for ceres-solver

Coinor-libcoinmp-dev

Simple C API for COIN-OR Solvers Clp and Cbc -- development

Evolver-nox

Surface Evolver - with no X support

Evolver-ogl

Surface Evolver - with OpenGL display

Hpcc

HPC Challenge benchmark

Libcneartree-dev

Library and headers for solving the Nearest Neighbor Problem

Libcppnumericalsolvers-dev

C++ library of numerical optimization methods for nonlinear functions

Libcubature-dev

Multi-dimensional adaptive integration (cubature) in C

Liblbfgspp-dev

C++ library that implements the Limited-memory BFGS algorithm

Libpsurface-dev

piecewise linear bijections between triangulated surfaces -- development files

Libquantum-dev

library for the simulation of a quantum computer (development files)

Libstopt-dev

library for stochastic optimization problems (development package)

Python3-agate

data analysis library optimized for human readability

Python3-agatedbf

support for dbf files in agate

Python3-agateexcel

support for Excel files in agate

Python3-agatesql

support for SQL read/write in agate

Python3-bcolz

high performant compressed data container based on NumPy (Python 3)

Python3-compyle

Execute a subset of Python on HPC platforms

Python3-cyarray

Fast, typed, resizable, Cython array

Python3-dbfread

read DBF Files with Python

Python3-lazyarray

Python module providing a NumPy-compatible lazily-evaluated array

Python3-leather

charting library for Python

Python3-libpysal

Library of spatial analysis functions

Python3-numcodecs

buffer compression and transformation codecs for Python

Python3-spyder-kernels

Jupyter kernels for the Spyder console - Python 3

Python3-spyder-line-profiler

line profiling plugin for the Spyder IDE

Python3-spyder-memory-profiler

memory profiling plugin for the Spyder IDE

Python3-spyder-reports

plugin to render scientific reports within the Spyder IDE

Python3-spyder-unittest

Plugin to run tests within the Spyder IDE

Python3-stopt

library for stochastic optimization problems (Python 3 bindings)

Python3-threadpoolctl

Python helpers for common threading libraries (BLAS, OpenMP)

Python3-zarr

chunked, compressed, N-dimensional arrays for Python

Theano-doc

CPU/GPU math expression compiler for Python (docs)

Debian packages in contrib or non-free

Libmagma-dev

Matrix Algebra on GPU and Multicore Architectures (dev)

Libsuitesparse-metis-dev

collection of libraries for computations for sparse matrices

Matlab-support

distro integration for local MATLAB installations

Metis-edf

Family of Multilevel Partitioning Algorithms

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev

Basic Linear Algebra Subroutines 3, static library

Libgismo-dev

Geometry plus simulatiom modules development files

Python3-pydap

implementation of the Data Access Protocol in Python

Xtensor-python-dev

Python bindings for the xtensor library

Physics - Debian Science Physics packages

This metapackage will install Debian Science packages related to Physics. You might also be interested in the debtag field::physics and, depending on your focus, in education-physics metapackage.

Official Debian packages with high relevance

Abinit

package for electronic structure calculations

Axiom

General purpose computer algebra system: main binary and modules

Cadabra

??? missing short description for package cadabra :-(

Cernlib

CERNLIB data analysis suite - general use metapackage

Cp2k

Ab Initio Molecular Dynamics

Drawxtl

crystal structure viewer

Etsf-io

Binary tools to check, merge and read ETSF files

Feynmf

set of LaTeX macros for creating Feynman diagrams

Fityk

general-purpose nonlinear curve fitting and data analysis

Geant321

[Physics] Particle detector description and simulation tool

Gerris

Fluid Flow Solver

Ghkl

diffractometer computation control application

Gpaw

DFT and beyond within the projector-augmented wave method

Gpiv

GUI program for Particle Image Velocimetry

Gpivtools

command line programs for Particle Image Velocimetry

Gwyddion

Scanning Probe Microscopy visualization and analysis tool

Libroot-math-mlp-dev

Multi layer perceptron extension for ROOT - development files

Libroot-montecarlo-vmc-dev

Virtual Monte-Carlo library for ROOT - development files

Libroot-tmva-dev

Toolkit for multivariate data analysis - development files

Maxima

Computer algebra system -- base system

Meshlab

System for processing and editing triangular meshes

Mpqc

Massively Parallel Quantum Chemistry Program

Oce-draw

??? missing short description for package oce-draw :-(

Openfoam

Open source toolbox for Computational Fluid Dynamics (CFD) - binaries

Openmx

package for nano-scale material simulations

Opticalraytracer

Virtual lens/mirror design workshop

Paw

Physics Analysis Workstation - a graphical analysis program

Paw++

Physics Analysis Workstation (Lesstif-enhanced version)

Psi3

Quantum Chemical Program Suite

Pyfr

flux reconstruction in Python

Pymca

Applications and toolkit for X-ray fluorescence analysis -- scripts

Python3-deap

Distributed Evolutionary Algorithms in Python3

Python3-sympy

Computer Algebra System (CAS) in Python (Python 3)

Quantum-espresso

Electronic-Structure and Ab-Initio Molecular Dynamics Suite

Root-system

metapackage to install all ROOT packages

Science-electronics

Debian Science Electronics transitional package

Science-numericalcomputation

Debian Science Numerical Computation packages

Siconos

modeling and simulation of nonsmooth dynamical systems (simulation runner tool)

Siconos-mechanics-tools

modeling and simulation of nonsmooth dynamical systems (mechanics tools)

Tessa

simulation of 3D optical systems with the FDTD method

Tessa-mpi

simulation of 3D optical systems using FDTD on MPI clusters

Toulbar2

Exact combinatorial optimization for Graphical Models

V-sim

Visualize atomic structures

Official Debian packages with lower relevance

Evolver-nox

Surface Evolver - with no X support

Evolver-ogl

Surface Evolver - with OpenGL display

Feel++-apps

A library for the finite element method

Openctm-tools

Tools for compression of 3D triangle meshes

Paw-demos

Physics Analysis Workstation examples and tests

Science-mathematics

Debian Science Mathematics packages

Science-statistics

Debian Science Statistics packages

Packaging has started and developers might try the packaging code in VCS

Fdmnes

calculates spectra of different spectroscopies

Geant4

physics simulation toolkit

Unofficial packages built by somebody else

Octaviz

3D visualization system for Octave

No known packages available but some record of interest (WNPP bug)

Blzpack

library for solving large sparse eigenproblems

Clhep

Class Library for High Energy Physics

Gate

Geant4 Application for Emission Tomography

No known packages available

Espresso++

Extensible Simulation Package for Research on Soft matter

Jfreemesh

3D mesh library in Java

Spis

Software toolkit for spacecraft-plasma interactions modelling

Physics-dev - Debian Science Physics-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Mathematics.

You might also be interested in the science-physics metapackage.

Official Debian packages with high relevance

Fenics

Automated Solution of Differential Equations

Fftw-dev

library for computing Fast Fourier Transforms

Libasl-dev

development files for ASL

Libbasix-dev

Finite Element Basis Function Definition Runtime Library (development headers)

Libdeal.ii-dev

Differential Equations Analysis Library - development files

Libdolfinx-dev

Shared links and header files for DOLFIN

Libfclib-dev

read and write problems from the Friction Contact Library (headers)

Libfeel++-dev

A library for the finite element method

Libfftw3-dev

Library for computing Fast Fourier Transforms - development

Libnfft3-dev

development files for the NFFT library

Libopenctm-dev

Library headers for compression of 3D triangle meshes

Libp4est-dev

Algorithms for Parallel Adaptive Mesh Refinement - development files

Libplb-dev

CFD solver based on the lattice Boltzmann method. Development files

Libspfft-dev

Sparse 3D FFT library with MPI, OpenMP, CUDA / ROCm support (development files)

Libxray-absorption-perl

x-ray absorption data for the elements

Libxray-scattering-perl

x-ray scattering data for the elements

Libxray-spacegroup-perl

symmetry operations for the crystal space groups

Pyfai

Fast Azimuthal Integration scripts

Python3-basix

Finite Element Basis Function Definition Runtime Library (Python 3)

Python3-dmsh

High-quality 2D mesh generator based on distmesh

Python3-dolfin

Base Python interface for DOLFIN (Python 3)

Python3-dolfinx

Python interface for DOLFIN (Python 3)

Python3-ffcx

next-gen compiler for finite element variational forms (Python 3)

Python3-gpyfft

Wrapper for the OpenCL FFT library clFFT (Python 3)

Python3-ltfatpy

Large Time-Frequency Toolbox (LTFAT) in Python

Python3-meshplex

fast tools for simplex meshes (Python 3)

Python3-meshzoo

simple geometric meshes (Python 3)

Python3-multipletau

multiple-tau algorithm for Python3/NumPy

Python3-pyfftw

Pythonic wrapper around FFTW - Python 3

Python3-pygalmesh

Python 3 frontend to CGAL's 3D mesh generators

Python3-pynfft

Python bindings for the NFFT3 library - Python 3

Python3-pyode

Python bindings for The Open Dynamics Engine

Python3-quantities

Library for computation of physical quantities with units, based on numpy

Sfftw-dev

library for computing Fast Fourier Transforms

Trilinos-all-dev

object-oriented framework for large-scale problems - development files (ALL)

Official Debian packages with lower relevance

Libopm-common-dev

Tools for Eclipse reservoir simulation files -- development files

Libopm-grid-dev

DUNE grid implementations for reservoir simulation -- development files

Libopm-material-dev

transitional package

Libopm-models-dev

C++ simulation framework for porous media flow -- development files

Libopm-simulators-dev

Parallel porous media / reservoir simulators -- development files

Libopm-upscaling-dev

Porous media upscaling tools -- development files

Python3-opm-common

Tools for Eclipse reservoir simulation files -- Python wrappers

Python3-opm-simulators

Python wrappers for the Open porous media / reservoir simulators

Debian packages in contrib or non-free

Libtriangle-dev

High-quality 2-D mesh generator -- development files

Presentation - Debian Science generic tools for presentations

This metapackage will install Debian Science some packages which are useful for doing presentations for instance on scientific conferences.

Official Debian packages with high relevance

Dspdfviewer

Dual-Screen PDF Viewer for LaTeX-beamer

Pdf-presenter-console

multi-monitor presentation tool (ala Keynote) for PDF files

Texlive-latex-extra

TeX Live: LaTeX additional packages

Texlive-publishers

TeX Live: Publisher styles, theses, etc.

Zathura

document viewer with a minimalistic interface

Psychophysics - Debian Science packages for Psychophysics

This metapackage will install Debian packages which might be useful for carrying out any experiment relating physical stimuli and their psychological effects.

The selection of packages is targeting software for stimuli delivery. For additional software related to the analysis of the acquired data refer to science-neuroscience-cognitive, med-imaging depending on the domain of application. Additionally look into science-bci since those often provide a complete loop frameworks including stimuli delivery.

Official Debian packages with high relevance

Libfreenect-dev

library for accessing Kinect device -- development files

Octave-psychtoolbox-3

toolbox for vision research -- Octave bindings

Psychopy

environment for creating psychology stimuli in Python

Official Debian packages with lower relevance

Opensesame

graphical experiment builder for the social sciences

Science-neuroscience-cognitive

Debian Science packages for Cognitive Neuroscience

Packaging has started and developers might try the packaging code in VCS

Debruijn

De Bruijn cycle generator

Unofficial packages built by somebody else

Psytoolkit

programming and running psychological experiments

No known packages available but some record of interest (WNPP bug)

Pebl

platform for psychology experiments

Visionegg

Python library for 2D/3D visual stimulus generation

No known packages available

Nrec

neurological stimulation, data acquisition and experiment control

Psychlops

Tscope

C/C++ experiment programming library for cognitive scientists

Robotics - Debian Robotics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Robotics.

You might also be interested in the science-engineering metapackage.

Official Debian packages with high relevance

Aseba

Event-based framework for distributed mobile robots control

Catkin-lint

Check Robot OS catkin packages for common errors

Catkin-tools

Command line tools for catkin workspaces

Choreonoid

Integrated robotics GUI environment

Collada-urdf-tools

ROS collada_urdf tools

Gazebo9

transitional package

Joint-state-publisher

ROS joint_state_publisher

Jskeus

Lisp based intelligent robots programming system

Liburdfdom-tools

URDF DOM - tools

Morse-simulator

??? missing short description for package morse-simulator :-(

Mrgingham

Chessboard finder for visual calibration routines

Octomap-tools

Tools for 3D occupancy grid mapping

Octovis

Visualization tool for OctoMap

Orca

Scriptable screen reader

Pcl-ros-tools

Bridge between Robot OS library (ROS) and PCL - tools

Ros-camera-calibration

ROS camera_calibration nodes

Ros-desktop

Robot OS desktop metapackage

Ros-desktop-full

Robot OS desktop-full metapackage

Ros-opencv-apps

opencv_apps Robot OS package - apps

Ros-perception

Python Robot OS perception metapackage

Ros-robot

Python Robot OS robot metapackage

Ros-robot-state-publisher

Robot OS robot_state_publisher

Ros-simulators

Python Robot OS simulators metapackage

Rosdiagnostic

command line tool to print aggregated diagnostic (Robot OS)

Xenomai-runtime

Xenomai runtime utilities

Official Debian packages with lower relevance

Arduino-ctags

Arduino fork of exuberant ctags

Arduino-mk

Program your Arduino from the command line

Gnuplot

Command-line driven interactive plotting program.

Joint-state-publisher-gui

ROS joint_state_publisher_gui

Libcoin-runtime

high-level 3D graphics kit - external data files

Octave

GNU Octave language for numerical computations

Ompl-demos

Open Motion Planning Library (OMPL) demos

Vtk9

Binaries for VTK9

Packaging has started and developers might try the packaging code in VCS

Robot-player

Networked server for robots and sensors

Unofficial packages built by somebody else

Orocos-ocl

Orocos Component Library

Orocos-rtt

Orocos Real-Time Toolkit

No known packages available but some record of interest (WNPP bug)

Openhrp

OpenHRP robotics simulator

Openrtm

OpenRTM robotics middleware

Solid

Software library for collision detection of geometric objects in 3D space.

No known packages available

D-collide

D-Collide is a real-time collision detection library aimed

Openrave

OpenRAVE robotics platform

Roboop

synthesis, and simulation of robotic manipulator models

Rtnet

hard real-time network protocol stack

Robotics-dev - Debian Robotics development packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages that are relevant to develop applications for robotics.

Official Debian packages with high relevance

Ignition-tools

Entry point for using all the suite of ignition tools - app

Jskeus-dev

Development files of Lisp based intelligent robots programming system

Libapriltag-dev

AprilTags Visual Fiducial System

Libccd-dev

Library for collision detection between convex shapes - dev files

Libcnoid-dev

Integrated robotics GUI environment - development files

Libcomedi-dev

Development library for Comedi

Libconsole-bridge-dev

console bridge - development files

Libcv-dev

??? missing short description for package libcv-dev :-(

Libdart-dev

Kinematics Dynamics and Optimization Library - development files

Libfcl-dev

Flexible Collision Library - development files

Libgazebo-dev

Open Source Robotics Simulator - Development Files

Libignition-cmake-dev

Ignition Robotics CMake Library - Development files

Libignition-common-dev

Collection of useful code used by robotics apps - Metapackage

Libignition-fuel-tools-dev

Ignition fuel-tools classes and functions - Development files

Libignition-math-dev

Ignition Robotics Math Library - Development files

Libignition-msgs-dev

Set of message definitions used by robotics apps - Dev files

Libignition-plugin-dev

Ignition Robotics Plugin Library - Development files

Libignition-transport-dev

Ignition Robotics transport Library - Development files

Libignition-utils-dev

Ignition Utils Library - Development files

Libkdl-parser-dev

Development files for ROS kdl_parser library

Liboctomap-dev

Octomap library development files

Libode-dev

Open Dynamics Engine - development files

Libompl-dev

Open Motion Planning Library (OMPL) development files

Libopenigtlink-dev

Open IGT Link is a simple network protocol - development

Liborocos-bfl-dev

Orocos Bayesian Filtering Library development files

Liborocos-kdl-dev

Kinematics and Dynamics Library development files

Libpcl-dev

Point Cloud Library - development files

Libpcl-ros-dev

Bridge between Robot OS library (ROS) and PCL - development headers

Libroboptim-core-dev

numerical optimization library - development files

Librobottestingframework-dev

Robot Testing Framework - development files

Librosconsole-dev

Development files for librosconsole

Libsdformat-dev

Simulation Description Format (SDF) parser - Development files

Libsimbody-dev

SimTK multibody dynamics API - development files

Libslicot-dev

numerical algorithms from systems and control theory (static library)

Liburdf-dev

Development files for ROS urdf library

Liburdfdom-dev

URDF DOM - development files

Liburdfdom-headers-dev

URDF DOM - header files

Libvisp-dev

development files for ViSP

Python3-catkin-lint

Check Robot OS catkin packages for common errors (transitional package)

Python3-comedilib

Python3 wrapper for Comedilib

Python3-dmsh

High-quality 2D mesh generator based on distmesh

Python3-meshplex

fast tools for simplex meshes (Python 3)

Python3-meshzoo

simple geometric meshes (Python 3)

Python3-osrf-pycommon

Commonly needed Python modules for software developers

Python3-tf2

Robot OS tf2 transform library - Python 3

Ros-desktop-dev

Robot OS desktop development metapackage

Ros-desktop-full-dev

Robot OS desktop-full development metapackage

Ros-desktop-full-lisp-dev

LISP Robot OS desktop-full development metapackage

Ros-desktop-full-python-dev

Python Robot OS desktop-full development metapackage

Ros-environment

Robot OS environment hooks

Ros-perception-dev

Robot OS perception development metapackage

Ros-simulators-dev

Robot OS simulators development metapackage

Vcstool

Command line tool to make working with multiple repositories easier

Official Debian packages with lower relevance

Libmrgingham-dev

Chessboard finder for visual calibration routines

Python3-mrgingham

Chessboard finder for visual calibration routines

Visp-images-data

visual servoing library - dataset reference files

Debian packages in contrib or non-free

Libelas-dev

Library for Efficient Large-scale Stereo Matching

Packaging has started and developers might try the packaging code in VCS

Libignition-common3-core-dev

Collection of useful code used by robotics apps - Core dev files

Simulations - Debian Science Simulation packages

This metapackage will install Debian Science packages that are used to do simulations in different fields of science.

Official Debian packages with high relevance

Calculix-ccx

Three-Dimensional Structural Finite Element Program

Calculix-cgx

Calculix cgx is a 3-dimensional pre- and post-processor for fem

Esys-particle

Software for particle-based numerical modelling (MPI version)

Gazebo

Open Source Robotics Simulator - Binaries

Getdp

general environment for the treatment of discrete problems

Lammps

Molecular Dynamics Simulator

Libceres-dev

nonlinear least squares minimizer (development files)

Libdart-dev

Kinematics Dynamics and Optimization Library - development files

Libkim-api-v2-models

Models and model-drivers for KIM-API

Libopm-common-bin

Tools for Eclipse reservoir simulation files -- utility programs

Libopm-grid-bin

corner point grid utility programs

Libopm-simulators-bin

Parallel porous media / reservoir simulators -- applications

Libopm-upscaling-bin

Porous media upscaling tools -- applications

Liggghts

Open Source DEM Particle Simulation Software.

Mbpoll

command line utility to communicate with ModBus slave (RTU or TCP)

Music-bin

Multi-Simulation Coordinator for MPI -- Utilities

Neuron

Simulation environment for computational models of neurons

Occt-draw

Open CASCADE Technology command interpreter and graphical test system

Occt-misc

OCCT CAE platform shared library miscellaneous files

Openfoam

Open source toolbox for Computational Fluid Dynamics (CFD) - binaries

Pysph-viewer

Open-source framework for Smoothed Particle Hydrodynamics (viewer)

Python3-deap

Distributed Evolutionary Algorithms in Python3

Python3-escript

Escript/Finley finite elements Python3 system (with OpenMP)

Python3-escript-mpi

(OpenMP + MPI)

Python3-pysph

Open-source framework for Smoothed Particle Hydrodynamics

Python3-qutip

python package for simulating the dynamics of open quantum systems

Python3-sfepy

Simple Finite Elements in Python

Python3-woo

Discrete dynamic compuations, esp. granular mechanics (python 3)

Siconos

modeling and simulation of nonsmooth dynamical systems (simulation runner tool)

Siconos-mechanics-tools

modeling and simulation of nonsmooth dynamical systems (mechanics tools)

Sumo

Simulation of Urban MObility (SUMO)

Tkgate

Tcl/Tk based digital circuit editor and simulator

Yade

Platform for discrete element modeling

Official Debian packages with lower relevance

Calculix-ccx-doc

Three-Dimensional Structural Finite Element Program (documentation files)

Calculix-ccx-test

Three-Dimensional Structural Finite Element Program (documentation files)

Calculix-cgx-examples

Example files for Calculix GraphiX

Ceres-solver-doc

documentation for ceres-solver

Libopensurgsim-dev

Free platform for surgical simulation - development

Libopm-common-dev

Tools for Eclipse reservoir simulation files -- development files

Libopm-grid-dev

DUNE grid implementations for reservoir simulation -- development files

Libopm-material-dev

transitional package

Libopm-models-dev

C++ simulation framework for porous media flow -- development files

Libopm-simulators-dev

Parallel porous media / reservoir simulators -- development files

Libopm-upscaling-dev

Porous media upscaling tools -- development files

Python3-opm-common

Tools for Eclipse reservoir simulation files -- Python wrappers

Python3-opm-simulators

Python wrappers for the Open porous media / reservoir simulators

Python3-pyswarms

research toolkit for particle swarm optimization in Python

Packaging has started and developers might try the packaging code in VCS

Fdmnes

calculates spectra of different spectroscopies

Libgismo-dev

Geometry plus simulatiom modules development files

Social - Debian Science social sciences packages

This metapackage will install Debian Science packages useful for social sciences.

Official Debian packages with high relevance

Opensesame

graphical experiment builder for the social sciences

Statistics - Debian Science Statistics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to statistics. This task is a general task which might be useful for any scientific work. It depends from a lot of R packages as well as from other tools which are useful to do statistics. Moreover the Science Mathematics task is suggested to optionally install all mathematics related software.

Official Debian packages with high relevance

Apophenia-bin

Apophenia Statistical C Library -- binary package

Datamash

statistics tool for command-line interface

Elpa-ess

Emacs mode for statistical programming and data analysis

Libdistlib-java

Java library of statistical distribution functions

Littler

GNU R scripting and command-line front-end -- transition package

Persalys

GUI for uncertainty treatment and variabilities management

Psignifit

Fitting and testing hypotheses about psychometric functions

Pspp

Statistical analysis tool

Python3-bayespy

variational Bayesian inference tools for Python

Python3-hmmlearn

unsupervised learning and inference of Hidden Markov Models

Python3-openturns

Python3 front-end of OpenTURNS (aka TUI)

Python3-pandas

data structures for "relational" or "labeled" data

Python3-persalys

GUI for uncertainty treatment (Python bindings)

Python3-scipy

scientific tools for Python 3

Python3-statsmodels

Python3 module for the estimation of statistical models

R-cran-abind

GNU R abind multi-dimensional array combination function

R-cran-acepack

GNU R package for regression transformations

R-cran-afex

GNU R package for analyzing factorial experiments using ANOVA or mixed models

R-cran-amore

GNU R: A MORE flexible neural network package

R-cran-arm

Data Analysis Using Regression and Multilevel/Hierarchical Models

R-cran-bayesfactor

GNU R Bayes factors for t-tests, ANOVAs and contingency tables

R-cran-bayesm

GNU R package for Bayesian inference

R-cran-bms

GNU R package for Bayesian model averaging for linear models

R-cran-boot

GNU R package for bootstrapping functions from Davison and Hinkley

R-cran-bradleyterry2

GNU R package for using Bradley-Terry models

R-cran-ca

GNU R package for simple, multiple and joint correspondence analysis

R-cran-cairodevice

GNU R Cairo/Gtk2 device driver package

R-cran-car

GNU R Companion to Applied Regression by John Fox

R-cran-caret

GNU R package for classification and regression training

R-cran-chron

GNU R package for chronologically ordered objects

R-cran-cluster

GNU R package for cluster analysis by Rousseeuw et al

R-cran-coda

Output analysis and diagnostics for MCMC simulations in R

R-cran-codetools

GNU R package providing code analysis tools

R-cran-coin

GNU R package providing conditional inference procedures

R-cran-contfrac

GNU R package providing various utilities for evaluating continued fractions

R-cran-conting

GNU R package for Bayesian analysis of contingency tables

R-cran-corpcor

GNU R for Estimation of Covariance and Correlation -- corpcor

R-cran-date

GNU R package for date handling

R-cran-dbi

GNU R package providing a generic database interface

R-cran-deldir

GNU R Delaunay Triangulation and Dirichlet (Voronoi) Tessellation

R-cran-desolve

GNU R package providing functions that solve initial value problems

R-cran-eco

GNU R routines for Bayesian ecological inference

R-cran-ecodist

GNU R package for dissimilarity-based ecological analysis

R-cran-effects

GNU R graphical and tabular effects display for glm models

R-cran-elliptic

GNU R package providing elliptic and related functions

R-cran-energy

GNU R package for energy statistics for distribution comparison

R-cran-erm

GNU R package for 'extended Rasch modelling'

R-cran-estimability

GNU R package providing tools for determining estimability of linear functions

R-cran-expm

GNU R Computation of the matrix exponential and related quantities

R-cran-fastcluster

Fast hierarchical clustering routines for GNU R

R-cran-fbasics

GNU R package for financial engineering -- fBasics

R-cran-fcopulae

GNU R package for financial engineering -- fCopulae

R-cran-fextremes

GNU R package for financial engineering -- fExtremes

R-cran-fmultivar

GNU R package for financial engineering -- fMultivar

R-cran-foptions

GNU R package for financial engineering -- fOptions

R-cran-foreign

GNU R package to read/write data from other stat. systems

R-cran-fportfolio

GNU R package for financial engineering -- fPortfolio

R-cran-gam

Generalized Additive Models for R

R-cran-gdata

GNU R package with data manipulation tools by Greg Warnes et al

R-cran-geepack

Generalized Estimating Equation Package for R

R-cran-ggplot2

implementation of the Grammar of Graphics

R-cran-glmnet

Lasso and Elastic-Net Regularized Generalized Linear Models

R-cran-gmodels

GNU R package with tools for model fitting by Greg Warnes et al

R-cran-goftest

GNU R Classical Goodness-of-Fit Tests for Univariate Distributions

R-cran-gplots

GNU R package with tools for plotting data by Greg Warnes et al

R-cran-gregmisc

GNU R package with miscellaneous functions by Greg Warnes et al

R-cran-gtools

GNU R package with R programming tools by Greg Warnes et al

R-cran-hdf5

GNU R package interfacing the NCSA HDF5 library

R-cran-hmisc

GNU R miscellaneous functions by Frank Harrell

R-cran-hypergeo

GNU R package providing the Gaussian hypergeometric for complex numbers

R-cran-its

GNU R package for handling irregular time series

R-cran-kernsmooth

GNU R package for kernel smoothing and density estimation

R-cran-lattice

GNU R package for 'Trellis' graphics

R-cran-latticeextra

GNU R package of additional graphical displays based on lattice

R-cran-lavaan

GNU R package for latent variable analysis -- lavaan

R-cran-lhs

GNU R Latin Hypercube Samples

R-cran-lme4

GNU R package for linear mixed effects model fitting

R-cran-lmtest

GNU R package for diagnostic checking in linear models

R-cran-logspline

GNU R package providing routines for the logspline density estimation

R-cran-lsmeans

GNU R package providing least-squares means for various classes of models

R-cran-mapdata

GNU R support for producing geographic maps (supplemental data)

R-cran-mapproj

GNU R support for cartographic projections of map data

R-cran-maps

GNU R support for producing geographic maps

R-cran-maptree

GNU R mapping, pruning, and graphing tree models

R-cran-mass

GNU R package of Venables and Ripley's MASS

R-cran-matchit

GNU R package of nonparametric matching methods

R-cran-matrix

GNU R package of classes for dense and sparse matrices

R-cran-mcmcpack

R routines for Markov chain Monte Carlo model estimation

R-cran-mgcv

GNU R package for multiple parameter smoothing estimation

R-cran-misc3d

GNU R collection of 3d plot functions and rgl-based isosurfaces

R-cran-mnp

GNU R package for fitting multinomial probit (MNP) models

R-cran-modelmetrics

GNU R Rapid Calculation of Model Metrics

R-cran-modeltools

GNU R package providing a collection of tools to deal with statistical models

R-cran-msm

GNU R Multi-state Markov and hidden Markov models in continuous time

R-cran-multcomp

GNU R package for multiple comparison procedures

R-cran-mvnormtest

GNU R package for multivariate normality test

R-cran-mvtnorm

GNU R package to compute multivariate Normal and T distributions

R-cran-nlme

GNU R package for (non-)linear mixed effects models

R-cran-nmf

GNU R framework to perform non-negative matrix factorization

R-cran-pbapply

GNU R package providing progress bars for vectorized R functions

R-cran-pbivnorm

GNU R package for calculating probabilities from a bivariate normal CDF

R-cran-permute

R functions for generating restricted permutations of data

R-cran-pscl

GNU R package for discrete data models

R-cran-psy

GNU R procedures for psychometrics

R-cran-qtl

GNU R package for genetic marker linkage analysis

R-cran-quadprog

GNU R package for solving quadratic programming problems

R-cran-qvcalc

GNU R quasi variances for factor effects in statistical models

R-cran-randomfieldsutils

utilities for the simulation and analysis of random fields

R-cran-raschsampler

GNU R package for sampling binary matrices with fixed margins

R-cran-rcmdr

GNU R platform-independent basic-statistics GUI

R-cran-relimp

GNU R package for inference on relative importance of regressors

R-cran-reshape2

Flexibly reshape data: a reboot of the reshape package

R-cran-rggobi

GNU R package for the GGobi data visualization system

R-cran-rgl

GNU R package for three-dimensional visualisation using OpenGL

R-cran-rgtk2

GNU R binding for Gtk2

R-cran-rinside

GNU R package to embed R in C++ application

R-cran-rmpi

GNU R package interfacing MPI libraries for distributed computing

R-cran-rms

GNU R regression modeling strategies by Frank Harrell

R-cran-rmysql

GNU R package providing a DBI-compliant interface to MySQL

R-cran-rodbc

GNU R package for ODBC database access

R-cran-rpart

GNU R package for recursive partitioning and regression trees

R-cran-rquantlib

GNU R package interfacing the QuantLib finance library

R-cran-rsdmx

GNU R package for the Statistical Data and Metadata Exchange (SDMX) framework

R-cran-rserve

GNU R Rserve tcp/ip server and sample clients

R-cran-rsprng

GNU R interface to SPRNG (Scalable Parallel RNGs)

R-cran-sandwich

GNU R package for model-robust standard error estimates

R-cran-sem

GNU R functions for fitting structural equation models -- sem

R-cran-sm

GNU R package for kernel smoothing methods

R-cran-snow

GNU R package for 'simple network of workstations'

R-cran-spam

GNU R functions for sparse matrix algebra

R-cran-spatstat

GNU R Spatial Point Pattern analysis, model-fitting, simulation, tests

R-cran-statmod

GNU R package providing algorithms and functions for statistical modeling

R-cran-strucchange

GNU R package for structural change regression estimation

R-cran-survival

GNU R package for survival analysis

R-cran-teachingdemos

GNU R Demonstrations for teaching and learning

R-cran-timedate

GNU R package for financial engineering -- timeDate

R-cran-tkrplot

GNU R embedded Tk plotting device package

R-cran-tseries

GNU R package for time-series analysis and comp. finance

R-cran-vcd

GNU R Visualizing Categorical Data

R-cran-vcdextra

GNU R package providing extensions and additions to the vcd package

R-cran-vgam

GNU R package for estimating vector generalized additive models

R-cran-xml

GNU R package for XML parsing and generation

R-cran-zelig

GNU R package providing a unified front-end for estimating statistical models

R-cran-zoo

GNU R package for totally ordered indexed observations

R-recommended

GNU R collection of recommended packages [metapackage]

Rkward

KDE frontend to the R statistics language

Official Debian packages with lower relevance

Libapophenia2-dev

Apophenia Statistical C Library -- development package

Libicb-utils-java

Java library of utilities to manage files and compute statistics

Libtamuanova-dev

Development files for the TAMU ANOVA library

Node-shiny-server-client

browser library for connecting to Shiny Server

Python3-leidenalg

Python3 implementation of the Leiden algorithm in C++

Python3-pynndescent

nearest neighbor descent for approximate nearest neighbors

R-cran-bbmle

GNU R tools for general maximum likelihood estimation

R-cran-blockmodeling

Generalized and classical blockmodeling of valued networks

R-cran-brglm

GNU R package for bias reduction in binomial-response GLMs

R-cran-catools

GNU R package providing various utility functions

R-cran-ellipse

GNU R functions for drawing ellipses and ellipse-like confidence regions

R-cran-fastmatch

GNU R package for fast match replacement for repeated look-ups

R-cran-futile.logger

logging utility for GNU R

R-cran-futile.options

GNU R futile options management

R-cran-gnm

GNU R package for generalized nonlinear models

R-cran-igraph

GNU R network analysis and visualization

R-cran-irlba

GNU R fast truncated SVD, PCA and symmetric eigendecomposition

R-cran-lambda.r

GNU R modeling data with functional programming

R-cran-luminescence

GNU R comprehensive luminescence dating data analysis

R-cran-magrittr

GNU R forward-pipe operator

R-cran-minpack.lm

GNU R Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK

R-cran-mlmrev

GNU R Examples from Multilevel Modelling Software Review

R-cran-nnls

GNU R package for non-negative least squares (the Lawson-Hanson algorithm)

R-cran-princurve

fit a principal curve in arbitrary dimension

R-cran-r.oo

GNU R object-oriented programming with or without references

R-cran-r.utils

GNU R various programming utilities

R-cran-rngtools

GNU R package for random number generators

R-cran-spc

GNU R Statistical Process Control

Science-mathematics

Debian Science Mathematics packages

Packaging has started and developers might try the packaging code in VCS

Rstudio

GNU R IDE

Unofficial packages built by somebody else

R-cran-fcalendar

GNU R package for financial engineering -- fCalendar

Tools - Debian Science generic tools for scientific work

This task lists Debian Science some packages which are providing some generic tools for sciences and to enhance scientific work.

Note that there is no according metapackage created since the packages might be to different to make sense to install all on one machine.

Official Debian packages with high relevance

Hdf-compass

viewer for HDF5 and related formats

Mrcal

Calibration and SFM library

Openstereogram

Stereogram ("Magic Eye") generator with GUI

Python3-h5netcdf

netCDF4 support via h5py for Python 3

Python3-h5py

general-purpose Python interface to hdf5

Python3-hdf5plugin

Python library to make HDF5 compression filters usable from h5py

Python3-hdf5storage

high-level utilities to read from and write to HDF5 (Python 3)

Python3-pybind11

pybind11 helper module for Python 3

Reprounzip

tool for reproducing scientific experiments (unpacker)

Reprozip

tool for reproducing scientific experiments (packer)

Science-workflow

workflow management systems useful for scientific research

Xoscope

digital oscilloscope

Official Debian packages with lower relevance

Libmemtailor-dev

C++ library of special purpose memory allocators (developer tools)

Libmrcal-dev

Calibration and SFM library

Libmrmpi-dev

Implements MapReduce operation on top of standard MPI message - development

Python3-mrcal

Calibration and SFM library

Python3-opcodes

Database of Processor Instructions/Opcodes (Python 3)

Python3-pweave

scientific report generator for Python

Spacenavd

daemon for using 3D input devices from 3Dconnexion

Tiemu-skinedit

skin editor for TiEmu

Packaging has started and developers might try the packaging code in VCS

Python3-pydap

implementation of the Data Access Protocol in Python

Typesetting - Debian Science typesetting packages

This metapackage will install Debian Science packages related to typesetting. You might also be interested in the use::typesetting debtag.

Official Debian packages with high relevance

Auctex

integrated document editing environment for TeX etc.

Biber

Much-augmented BibTeX replacement for BibLaTeX users

Bibus

bibliographic database

Bibutils

interconvert various bibliographic data formats

Cb2bib

extract bibliographic references from various sources

Dia

Diagram editor

Diploma

Write scientific papers with Debian

Feynmf

set of LaTeX macros for creating Feynman diagrams

Gummi

simple LaTeX editor with live preview

Impose+

Postscript utilities for two-up printing, bbox, etc

Ipe

drawing editor for creating figures in PDF or PS formats

Ipe5toxml

converts Ipe5 figures to an XML file readable by Ipe

Jabref

graphical frontend to manage BibTeX and BibLaTeX databases

Jeuclid-mathviewer

Complete MathML rendering solution (Swing MathViewer)

Kbibtex

BibTeX editor for KDE

Kile

KDE Integrated LaTeX Environment

Latexdiff

utility to mark up significant differences between LaTeX files

Libjlatexmath-java

Implementation of LaTeX math mode wrote in Java

Lyx

document processor

Mlpost

OCaml interface to Metapost (command-line tool)

Pandoc

general markup converter

Pandoc-citeproc

Pandoc support for Citation Style Language - tools

Pybliographer

tool for manipulating bibliographic databases

Pybtex

BibTeX-compatible bibliography processor

Python3-pybtex-docutils

docutils backend for pybtex

Python3-sphinxcontrib.bibtex

Sphinx extension for BibTeX style citations

R-cran-knitr

GNU R package for dynamic report generation using Literate Programming

Referencer

GNOME Document Organiser

Sagetex

Embed Sage code and plots into LaTeX

Setzer

simple yet full-featured LaTeX editor

Sketch

3D diagrams for TeX from scene description language

Texlive

TeX Live: A decent selection of the TeX Live packages

Texlive-bibtex-extra

TeX Live: BibTeX additional styles

Texlive-math-extra

TeX Live: Mathematics packages

Texlive-publishers

TeX Live: Publisher styles, theses, etc.

Texlive-science

TeX Live: Mathematics, natural sciences, computer science packages

Texmaker

cross-platform LaTeX editor

Texstudio

fully featured LaTeX editor

Transfig

??? missing short description for package transfig :-(

Vim-latexsuite

view, edit and compile LaTeX documents from within Vim

Xfig

Facility for Interactive Generation of figures under X11

Zotero-standalone

organize and share your research sources

Official Debian packages with lower relevance

Csv2latex

command-line CSV to LaTeX file converter

Libgtkmathview-bin

rendering engine for MathML documents

Libqtexengine-dev

Development files for the QTeXEngine library

Libreoffice-dmaths

Formula editing plug-in for LibreOffice Writer

Luasseq

TeX Live: transitional dummy package

R-cran-gridbase

GNU R Integration of base and grid graphics

R-cran-highr

Syntax Highlighting for R Source Code

R-cran-scatterd3

D3 JavaScript scatterplot from GNU R

R-cran-shape

GNU R functions for plotting graphical shapes, colors

R-cran-xtable

GNU R coerce data to LaTeX and HTML tables

Svgtoipe

converts SVG figures to an XML file readable by Ipe

Tellico

Collection manager for books, videos, music, etc

Xul-ext-zotero

Firefox extension to organize and share your research sources

Packaging has started and developers might try the packaging code in VCS

Texmacs

WYSIWYG mathematical text editor using TeX fonts

Unofficial packages built by somebody else

Pymarc

read, write and modify MARC bibliographic data

No known packages available but some record of interest (WNPP bug)

Quaneko

An index tool of TXT, PDF, DOC, HTML and others

No known packages available

Gpapers

bibliography management software

Viewing - Debian Science data visualisation packages

This metapackage will install Debian Science packages related to data visualization. You might also be interested in the use::viewing debtag.

Official Debian packages with high relevance

3depict

visualisation and analysis for single valued point data

Camv-rnd

Standard installation of camv-rnd

Ctioga2

polymorphic plotting program

Feedgnuplot

Pipe-oriented frontend to Gnuplot

Fityk

general-purpose nonlinear curve fitting and data analysis

G3data

??? missing short description for package g3data :-(

Geg

GTK+ Equation Grapher

Gfsview

??? missing short description for package gfsview :-(

Giza-dev

Lightweight scientific plotting library (development files)

Gle-graphics

Graphics Layout Engine

Gmsh

Three-dimensional finite element mesh generator

Gnudatalanguage

Free IDL compatible incremental compiler

Gnuplot

Command-line driven interactive plotting program.

Grace

XY graphing and plotting tool

Graphviz

rich set of graph drawing tools

Gri

a language for scientific illustration

Gwyddion

Scanning Probe Microscopy visualization and analysis tool

Ifrit

powerful tool for visualizing 3-dimensional data sets

Imview

Image viewing and analysis application

Kst

scientific data plotting tool

Labplot

interactive graphing and analysis of scientific data

Libgnuplot-iostream-dev

C++ programming interface for gnuplot. Headers

Libqglviewer2

OpenGL 3D viewer library based on Qt - runtime library

Lybniz

mathematical function graph plotter

Mathgl

library for scientific graphs (utilities and examples)

Matlab2tikz

converter of Octave plots to TikZ figures (for integration into LaTeX)

Mayavi2

scientific visualization package for 2-D and 3-D data

Open3d-gui

Transitional dummy package for open3d-viewer

Open3d-tools

Library for 3D data processing - tools

Ovito

visualization and analysis tool for atomistic simulation data

Paraview

Parallel Visualization Application

Pdl

perl data language: Perl extensions for numerics

Plotdrop

minimal GNOME frontend to GNUPlot

Python3-gnuplot

Python interface to the gnuplot plotting program

Python3-guiqwt

efficient 2D data-plotting library - Python 3

Python3-pyqtgraph

Scientific Graphics and GUI Library for Python 3

Python3-seaborn

statistical visualization library for Python3

Pyxplot

data plotting program producing publication-quality output

Qtiplot

data analysis and scientific plotting

R-cran-sjplot

GNU R data visualization for statistics in social science

Rlplot

GUI application for generating publication quality graphs

Scidavis

application for scientific data analysis and visualization

Solvespace

Parametric 2d/3d CAD

Trend

general-purpose, efficient trend graph

Tulip

System dedicated to the visualization of huge data sets as graphs

Udav

library for scientific graphs (window interface)

Veusz

2D and 3D scientific plotting application with graphical interface

Vistrails

Science visualisation workflow toolkit

Yorick

interpreted language and scientific graphics

Official Debian packages with lower relevance

Circos

plotter for visualizing data

Circos-tools

plotter for visualizing data - helper utilities

Findimagedupes

Finds visually similar or duplicate images

Jeuclid-mathviewer

Complete MathML rendering solution (Swing MathViewer)

Libcoin-dev

high-level 3D graphics devkit with Open Inventor and VRML97 support

Libgrits-dev

Development files for grits

Libgtkmathview-bin

rendering engine for MathML documents

Libgts-bin

utility binaries for libgts

Libpuzzle-bin

quick similar image finder - runtime tool

Libqglviewer-dev

OpenGL 3D viewer library based on Qt4 - development files

Libsoqt520-dev

Qt5 GUI component toolkit for Inventor - development

Libvtk9-dev

VTK header files

Libvtk9-java

VTK - Java language support

Libvtk9-qt-dev

VTK header files, containing Qt files

Med-imaging

Debian Med image processing and visualization packages

Python3-matplotlib

Python based plotting system in a style similar to Matlab (Python 3)

Python3-pivy

Coin binding for Python 3

Python3-vtk9

Python bindings for VTK

R-cran-aplpack

Another Plot PACKage: stem.leaf, bagplot, faces, spin3R and others

R-cran-colorspace

GNU R Color Space Manipulation

R-cran-ggplot2

implementation of the Grammar of Graphics

R-cran-labeling

GNU R Axis Labeling optimization

R-cran-plotrix

GNU R package providing various plotting functions

R-cran-qqman

R package for visualizing GWAS results using Q-Q and manhattan plots

R-cran-scales

Scale functions for visualization

R-cran-scatterplot3d

GNU R package for Visualizing Multivariate Data

R-cran-shape

GNU R functions for plotting graphical shapes, colors

R-cran-vioplot

GNU R toolbox for violin plots

Texlive-pictures

TeX Live: Graphics, pictures, diagrams

Vtk9-examples

VTK examples

Debian packages in contrib or non-free

Pgplot5

large subroutine library for plotting scientific data

Packaging has started and developers might try the packaging code in VCS

Cassandra

highly-scalable partitioned row store

Visit

interactive parallel visualization and graphical analysis tool

No known packages available but some record of interest (WNPP bug)

Pgfplots

TeX package to draw normal and/or logarithmic plots directly in TeX

Viewing-dev - Debian Science development of visualisation applications

This metapackage will install Debian Science packages related to the development of applications to visualise scientific data.

Official Debian packages with high relevance

Gnudatalanguage

Free IDL compatible incremental compiler

Inventor-dev

Open Inventor development files

Libchealpix-dev

HEALPix representation of spherical data - C development library

Libcoin-dev

high-level 3D graphics devkit with Open Inventor and VRML97 support

Libforge-dev

development files for forge

Libgl2ps-dev

Lib providing high quality vector output for OpenGL application, dev files

Libglbinding-dev

development files for glbinding

Libgli-dev

C++ image library for graphics software

Libglm-dev

C++ library for OpenGL GLSL type-based mathematics

Libglobjects-dev

development files for globjects

Libgnuplot-iostream-dev

C++ programming interface for gnuplot. Headers

Libgrits-dev

Development files for grits

Libgtkdatabox-dev

Gtk+ library to display large amounts of numerical data (development)

Libgtkdataboxmm-dev

C++ bindings for GtkDatabox - development files

Libgts-dev

development files for libgts

Libopen3d-dev

Library for 3D data processing - development headers

Liborigin2-dev

library for reading OriginLab Origin 7.5 project files (development)

Libplplot-dev

Scientific plotting library (development files)

Libqglviewer-dev

OpenGL 3D viewer library based on Qt4 - development files

Libqglviewer-dev-qt5

OpenGL 3D viewer library based on Qt5 - development files

Libqtexengine-dev

Development files for the QTeXEngine library

Libqwtplot3d-qt5-dev

3D plotting library based on Qt5/OpenGL (development)

Libslvs1-dev

SolveSpace geometric kernel (development files)

Libsoqt520-dev

Qt5 GUI component toolkit for Inventor - development

Libtulip-dev

Tulip graph library - core development files

Libvtk9-dev

VTK header files

Libvtk9-java

VTK - Java language support

Libvtk9-qt-dev

VTK header files, containing Qt files

Pdl

perl data language: Perl extensions for numerics

Python3-gnuplot

Python interface to the gnuplot plotting program

Python3-gnuplotlib

Gnuplot-based plotter for numpy

Python3-matplotlib

Python based plotting system in a style similar to Matlab (Python 3)

Python3-matplotlib-venn

Python 3 plotting area-proportional two- and three-way Venn diagrams

Python3-open3d

Library for 3D data processing - Python 3 bindings

Python3-pivy

Coin binding for Python 3

Python3-plplot-qt

Scientific plotting library (Python Qt GUI)

Python3-qwt

Pure Python implementation of Qwt - Python 3

Python3-qwt3d-qt5

Python bindings of the QwtPlot3D library

Python3-skimage

Python 3 modules for image processing

Python3-skimage-lib

Optimized low-level algorithms for Python 3 scikit-image

Python3-symfit

Symbolic Fitting in Python, fitting as it should be

Python3-vedo

Python module for 3D scientific visualization with VTK

Python3-vispy

interactive visualization in Python 3

Python3-vtk9

Python bindings for VTK

Vtk9-examples

VTK examples

Official Debian packages with lower relevance

Libcollada-dom2.4-dp-dev

Transitional package

Python3-opentsne

t-Distributed Stochastic Neighbor Embedding algorithm

Packaging has started and developers might try the packaging code in VCS

Python3-gneiss

data analysis and visualisation toolbox for high dimensional proportions

Python3-holoviews

annotate your data and let Python3 visualize

Python3-hvplot

familiar and high-level Python3 API for data exploration and visualization

Workflow - workflow management systems useful for scientific research

This task lists some packages providing workflow management systems useful for scientific research.

Official Debian packages with high relevance

Capsule-nextflow

packaging and deployment tool for Java applications

Coop-computing-tools

cooperative computing tools

Cwltool

Common Workflow Language reference implementation

Gearman

Distributed job queue

Gearman-tools

Tools for the Gearman distributed job queue

Make

utility for directing compilation

Pegasus-wms

Scientific workflow management system for HTCondor

Python3-nipype

Neuroimaging data analysis pipelines in Python3

Python3-wdlparse

Workflow Description Language (WDL) parser for Python

Snakemake

pythonic workflow management system

Toil

cross-platform workflow engine

Official Debian packages with lower relevance

Cwlformat

code formatter for Common Workflow Language

Libbenchmark-tools

Microbenchmark support library, tools and documentation