Debian Med Project
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Bugs of task bio-dev
Total bugs: 48
Open bugs: 34
Fixed bugs: 14
Links to other tasks
Biology 80 (865)
Phylogeny 5 (39)
Cloud 21 (243)
Medical data 1 (0)
Dental 0 (0)
Epidemiology 0 (0)
Imaging 229 (1249)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 0 (0)
Physics 28 (207)
Practice 2 (0)
Psychology 10 (160)
Research 0 (0)
Statistics 2 (4)
Tools 36 (236)
Typesetting 90 (603)
critical 0 0
grave 0 0
serious 9 1
important 4 0
normal 9 0
minor 2 0
wishlist 9 0

Summary bugs page of task Biology development

Immediately looking into bugs of the dependencies of this task is advised (427)*

Open bugs in dependent packages

9 serious, 4 important, 9 normal, 2 minor, 9 wishlist
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' upstream
749736 biococoa: GCC warnings that may lead to runtime issues with new GNUstep libraries buster, jessie, sid, stretch
843712 biojava4-live: FTBFS (failing tests)
659824 biojava-live: New version available
888023 biojava-live: Broken left-over binary-indep target triggers FTBFS with recent debhelper versions
887578 bioperl-run FTBFS: t/Bowtie.t failures
814617 freecontact: adequate reports symbol-size-mismatch /usr/bin/freecontact => _ZN11xercesc_3_16XMLUni18fgXercesLoadSchemaE
877590 FTBFS: error: package org.testng does not exist buster, sid
875009 [libbpp-qt] Future Qt4 removal from Buster upstream
858524 libhmsbeagle-dev: broken symlink: /usr/include/libhmsbeagle -> libhmsbeagle-2
832138 librostlab-blast: The package should compile without forcing the older -std=c++03
851472 librostlab-blast: autopkg test suite failure
847013 src:libsbml: build python3 bindings help
225651 ncbi-tools-x11: want Cn3D++
879619 ncbi-tools6: Please provide autopkgtest
813559 ngs-sdk: FTBFS: most platforms explicitly unsupported
784502 [openms] Qt4's WebKit removal buster, sid
816562 libopenms2.0: fails to upgrade from 'jessie' - trying to overwrite /usr/share/man/man3/libopenms.3.gz
822412 openms: non-free WSDL-Schema (ND); incomplete copyright (missing DSL, BSL-1.0 licenses)
853595 openms: ftbfs with GCC-7 buster, fixed-upstream, sid
865240 Please update dependencies from latex-xcolor to tl-latex-recommended buster, sid
871297 libopenms2.0: requires rebuild against GCC 7 and symbols/shlibs bump buster, sid
875073 [openms] Future Qt4 removal from Buster
881026 openms: Transition to xerces-c3.2
829741 pbbam: FTBFS (32-bit): pbmerge assertion failure
710121 pyfai: Please package the latest pyFAI
820060 python-biom-format: broken on big-endian architectures
883860 python-biopython: SeqRecord broken on Debian packages when python-biopython-sql package is not installed upstream
881555 python-csb: Please migrate away from Epydoc if possible
860158 python-pbcore: prints warnings with recent h5py on ppc64el
841073 python-ruffus: Needs 18 GB of RAM to build
751414 rdkit: postgresql cartridge not built
881562 rdkit: Please migrate away from Epydoc if possible

Open bugs in suggested packages

1 serious
852654 src:pbcopper: no point to releasing it without `unanimity`

Done bugs

742921 python-htseq: python.numpy dtype size error
749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. buster, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, patch, sid, stretch
866137 htslib autopkgtest is broken in 1.4.1-2
881149 htslib FTBFS: test failures on i386 buster, patch, sid
887829 mcl: please make the build reproducible patch
883845 mgltools-vision: Source includes "Vision/doc/Examples/lena.jpg" listed in Files-Excluded header
866460 pyfai: depends on obsolete python-imaging (replace with python3-pil or python-pil) buster, sid
672407 python-biopython: duplicate mathml2.dtd
730515 cd-hit-est is cdhit-est in Debian [Why?]
855625 r-bioc-iranges: ships dangling symlink /usr/share/doc/r-bioc-iranges/RleTricks.pdf
882362 r-bioc-variantannotation: autopkgtest failure
873865 relion: Please add arm64
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
Last update: Tue, 23 Jan 2018 06:52:52 -0000