Summary

Bugs of task bio-dev

Total bugs: 163

Open bugs: 135

Fixed bugs: 28

Links to other tasks

Tasks overview

Biology 314 (1752)

Biology development 135 (729)

Next generation sequencing 9 (65)

Phylogeny 13 (57)

Cloud 54 (309)

Content management 0 (0)

Covid-19 163 (1387)

Medical data 1 (1)

Dental 1 (3)

Epidemiology 4 (75)

Hospital information systems 1 (9)

Imaging 227 (1030)

Imaging development 81 (586)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 27 (176)

Practice 7 (42)

Psychology 8 (42)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 3 (7)

Tools 38 (241)

Typesetting 63 (508)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	0	2
important	18	2
normal	23	11
minor	60	9
wishlist	9	1

Summary bugs page of task Biology development

Immediately looking into bugs of the dependencies of this task is advised (729)^*

Open bugs in dependent packages

18 important, 23 normal, 60 minor, 9 wishlist

bamtools (2) Homepage: https://github.com/pezmaster31/bamtools/wiki Vcs Debian Med Packaging Team
865130	reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz'	ftbfs, upstream
1043881	bamtools: Fails to build source after successful build	ftbfs, sid, trixie
bio-tradis (1) Homepage: https://github.com/sanger-pathogens/Bio-Tradis Vcs Debian Med Packaging Team
1043774	bio-tradis: Fails to build source after successful build	ftbfs, sid, trixie
biococoa (1) Homepage: https://bioinformatics.org/biococoa/ Vcs Debian Med Packaging Team
749736	biococoa: GCC warnings that may lead to runtime issues with new GNUstep libraries	bookworm, bullseye, buster, jessie, sid, stretch, trixie
biosquid (2) Homepage: http://eddylab.org/software.html Vcs Debian-Med Packaging Team
1043996	biosquid: Fails to build source after successful build	ftbfs, sid, trixie
1049808	biosquid: Fails to build binary packages again after successful build	ftbfs, sid, trixie
cyvcf2 (1) Homepage: https://github.com/brentp/cyvcf2 Vcs Debian Med Packaging Team
1056799	cyvcf2: ftbfs with cython 3.0.x	sid, trixie
fermi-lite (2) Homepage: https://github.com/lh3/fermi-lite Vcs Debian Med Packaging Team
1044647	fermi-lite: Fails to build source after successful build	ftbfs, sid, trixie
1049564	fermi-lite: Fails to build binary packages again after successful build	ftbfs, sid, trixie
gatb-core (2) Homepage: https://github.com/GATB/gatb-core Vcs Debian Med Packaging Team
929564	gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit
983926	gatb-core: ftbfs with -march=x86-64-v2
hdf5 (19) Homepage: http://hdfgroup.org/HDF5/ Vcs Gilles Filippini
638753	libhdf5-serial-1.8.7: threadsafe memory leaks	moreinfo
715959	[Mayhem] Bug report on hdf5-tools: gif2h5 crashes with exit status 139
716008	[Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139
716010	[Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139
716011	[Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139
716012	[Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139
740613	libhdf5-7: Please include support for compression with libaec
748587	Duplicate and conflicting definitions of variable FILENAME	upstream
839784	libhdf5-dev: pkg-config file references ONLY the C library
915807	hdf5: CVE-2017-17507	security, upstream
958174	hdf5: please add the hdf5plugins
968559	libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing	moreinfo
1023446	libhdf5-openmpi-dev: h5pcc configured as static build
1023820	hdf5: Dependencies not tight enough
1031726	hdf5: CVE-2022-26061 CVE-2022-25972 CVE-2022-25942	security, upstream
1034807	hdf5: CVE-2018-11205	security, upstream
1034838	hdf5: CVE-2019-8396 CVE-2019-8398	security
1040862	hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin
1052250	pkg-config file incorrect for static linking
htseq (1) Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html Vcs Debian Med Packaging Team
1046620	htseq: Fails to build source after successful build	ftbfs, sid, trixie
libai-fann-perl (1) Homepage: https://metacpan.org/release/AI-FANN Vcs Debian Perl Group
948463	libai-fann-perl: Integer overflow leading to heap buffer overflow
libbio-asn1-entrezgene-perl (1) Homepage: https://metacpan.org/release/Bio-ASN1-EntrezGene Vcs Debian Perl Group
1047073	libbio-asn1-entrezgene-perl: Fails to build source after successful build	ftbfs, sid, trixie
libbio-samtools-perl (1) Homepage: https://metacpan.org/release/Bio-SamTools Vcs Debian Perl Group
1046631	libbio-samtools-perl: Fails to build source after successful build	ftbfs, sid, trixie
libbio-scf-perl (2) Homepage: https://metacpan.org/release/Bio-SCF Vcs Debian Perl Group
599961	libbio-scf-perl: FTBFS: Neither BIG nor LITTLE endian defined
1047210	libbio-scf-perl: Fails to build source after successful build	ftbfs, sid, trixie
libbpp-core (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015473	libbpp-core: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-phyl (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015475	libbpp-phyl: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-popgen (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015474	libbpp-popgen: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-qt (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015476	libbpp-qt: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-raa (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015477	libbpp-raa: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-seq (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015478	libbpp-seq: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-seq-omics (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015479	libbpp-seq-omics: ftbfs with LTO (link time optimization) enabled	sid, trixie
libchado-perl (3) Homepage: http://gmod.org/wiki/Chado Vcs Debian Med Packaging Team
1039562	libchado-perl: fails to access database during installation	wontfix
1047661	libchado-perl: Fails to build source after successful build	ftbfs, sid, trixie
1049705	libchado-perl: Fails to build binary packages again after successful build	ftbfs, sid, trixie
libcifpp (1) Homepage: https://github.com/PDB-REDO/libcifpp Vcs Debian Med Packaging Team
1048817	libcifpp: Fails to build source after successful build	ftbfs, sid, trixie
libedlib (2) Homepage: https://github.com/Martinsos/edlib Vcs Debian Med Packaging Team
1015484	libedlib: ftbfs with LTO (link time optimization) enabled	sid, trixie
1048671	libedlib: Fails to build source after successful build	ftbfs, sid, trixie
libfastahack (1) Homepage: https://github.com/ekg/fastahack Vcs Debian Med Packaging Team
1015486	libfastahack: ftbfs with LTO (link time optimization) enabled	sid, trixie
libgo-perl (1) Homepage: http://geneontology.sourceforge.net/ Vcs Debian Med Packaging Team
1046227	libgo-perl: Fails to build source after successful build	ftbfs, sid, trixie
libjloda-java (1) Homepage: https://github.com/danielhuson/jloda Vcs Debian Med Packaging Team
1047938	libjloda-java: Fails to build source after successful build	ftbfs, sid, trixie
libmuscle (1) Homepage: http://sourceforge.net/p/mauve/code/HEAD/tree/muscle/trunk/ Vcs Debian Med Packaging Team
1015504	libmuscle: ftbfs with LTO (link time optimization) enabled	sid, trixie
libncl (1) Homepage: https://github.com/mtholder/ncl Vcs Debian Med Packaging Team
1015505	libncl: ftbfs with LTO (link time optimization) enabled	sid, trixie
libpdb-redo (1) Homepage: https://github.com/PDB-REDO/libpdb-redo Vcs Debian Med Packaging Team
1046388	libpdb-redo: Fails to build source after successful build	ftbfs, sid, trixie
libpll (2) Homepage: http://www.libpll.org/ Vcs Debian Med Packaging Team
1046603	libpll: Fails to build source after successful build	ftbfs, sid, trixie
1049759	libpll: Fails to build binary packages again after successful build	ftbfs, sid, trixie
librcsb-core-wrapper (1) Homepage: https://sw-tools.rcsb.org/apps/CORE-WRAPPER/index.html Vcs Debian Med Packaging Team
1046372	librcsb-core-wrapper: Fails to build source after successful build	ftbfs, sid, trixie
librostlab (1) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1047025	librostlab: Fails to build source after successful build	ftbfs, sid, trixie
librostlab-blast (1) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1048643	librostlab-blast: Fails to build source after successful build	ftbfs, sid, trixie
libseqlib (1) Homepage: https://github.com/walaj/SeqLib Vcs Debian Med Packaging Team
1047821	libseqlib: Fails to build source after successful build	ftbfs, sid, trixie
libslow5lib (2) Homepage: https://github.com/hasindu2008/slow5lib Vcs Debian Med Packaging Team
1048497	libslow5lib: Fails to build source after successful build	ftbfs, sid, trixie
1049769	libslow5lib: Fails to build binary packages again after successful build	ftbfs, sid, trixie
libssw (1) Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library Vcs Debian Med Packaging Team
1015525	libssw: ftbfs with LTO (link time optimization) enabled	experimental, sid, trixie
libtabixpp (2) Homepage: https://github.com/ekg/tabixpp Vcs Debian Med Packaging Team
1015526	libtabixpp: ftbfs with LTO (link time optimization) enabled	sid, trixie
1049726	libtabixpp: Fails to build binary packages again after successful build	ftbfs, sid, trixie
libvcflib (1) Homepage: https://github.com/vcflib/vcflib Vcs Debian Med Packaging Team
1057440	libvcflib: 1
libwfa2 (1) Homepage: https://github.com/smarco/WFA2-lib Vcs Debian Med Packaging Team
1045603	libwfa2: Fails to build source after successful build	ftbfs, sid, trixie
mcl (1) Homepage: https://micans.org/mcl/ Vcs Debian Med Packaging Team
1046152	mcl: Fails to build source after successful build	ftbfs, sid, trixie
minimap2 (1) Homepage: https://github.com/lh3/minimap2 Vcs Debian Med Packaging Team
1046060	minimap2: Fails to build source after successful build	ftbfs, sid, trixie
mirtop (1) Homepage: https://github.com/miRTop/mirtop Vcs Debian Med Packaging Team
1044055	mirtop: test failure with pandas 2.0
ncbi-tools6 (1) Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Vcs Debian Med Packaging Team
225651	ncbi-tools-x11: want Cn3D++
nim-hts (2) Homepage: https://github.com/brentp/hts-nim Vcs Debian Med Packaging Team
1046095	nim-hts: Fails to build source after successful build	ftbfs, sid, trixie
1049588	nim-hts: Fails to build binary packages again after successful build	ftbfs, sid, trixie
pyfai (1) Homepage: https://github.com/silx-kit/pyFAI Vcs Debian PaN Maintainers
1056438	pyfai's autopkg tests fail with Python 3.12	sid, trixie
pyranges (1) Homepage: https://github.com/biocore-ntnu/pyranges Vcs Debian Med Packaging Team
1044064	pyranges: FTBFS with pandas 2.0
python-anndata (2) Homepage: https://github.com/theislab/anndata Vcs Debian Med Packaging Team
1044072	python-anndata: FTBFS with pandas 2.0
1056455	python-anndata's autopkg tests fail with Python 3.12	sid, trixie
python-biom-format (1) Homepage: https://biom-format.org/ Vcs Debian Med Packaging Team
1044074	python-biom-format: FTBFS with pandas 2.0
python-bx (1) Homepage: https://github.com/bxlab/bx-python Vcs Debian Med Packaging Team
1055709	python-bx ftbfs with Python 3.12	sid, trixie
python-cooler (1) Homepage: https://github.com/mirnylab/cooler Vcs Debian Med Packaging Team
1053940	python-cooler: test failure with pandas 2.1
python-csb (1) Homepage: https://github.com/csb-toolbox/CSB Vcs Debian Med Packaging Team
1056464	python-csb's autopkg tests fail with Python 3.12	sid, trixie
python-nanoget (1) Homepage: https://github.com/wdecoster/nanoget Vcs Debian Med Packaging Team
1044056	python-nanoget: test failure with pandas 2.0
python-pairix (1) Homepage: https://github.com/4dn-dcic/pairix Vcs Debian Med Packaging Team
1046425	python-pairix: Fails to build source after successful build	ftbfs, sid, trixie
python-pymummer (1) Homepage: https://github.com/sanger-pathogens/pymummer Vcs Debian Med Packaging Team
1046452	python-pymummer: Fails to build source after successful build	ftbfs, pending, sid, trixie
python-pyspoa (1) Homepage: https://github.com/nanoporetech/pyspoa Vcs Debian Med Packaging Team
1045607	python-pyspoa: Fails to build source after successful build	ftbfs, sid, trixie
python-pyvcf (1) Homepage: https://github.com/jamescasbon/PyVCF Vcs Debian Med Packaging Team
1046140	python-pyvcf: Fails to build source after successful build	ftbfs, pending, sid, trixie
python-skbio (5) Homepage: https://github.com/biocore/scikit-bio Vcs Debian Med Packaging Team
1044065	python-skbio: FTBFS with pandas 2.0
1048510	python-skbio: Fails to build source after successful build	ftbfs, sid, trixie
1049511	python-skbio: Fails to build binary packages again after successful build	ftbfs, sid, trixie
1056047	python-skbio ftbfs with Python 3.12 (and cython 3.0.5)	sid, trixie
1056873	python-skbio: ftbfs with cython 3.0.x	sid, trixie
python-sqt (1) Homepage: https://bitbucket.org/marcelm/sqt Vcs Debian Med Packaging Team
1049145	python-sqt: Fails to build source after successful build	ftbfs, sid, trixie
python-streamz (1) Homepage: https://github.com/python-streamz/streamz/ Vcs Debian Python Team
1046218	python-streamz: Fails to build source after successful build	ftbfs, sid, trixie
pytorch (2) Homepage: https://pytorch.org/ Vcs Debian Deep Learning Team
983517	pytorch: Build documentation
1056388	FTBFS with fmtlib 10	fixed-upstream, ftbfs
rdkit (5) Homepage: http://www.rdkit.org Vcs Debichem Team
927955	python-rdkit: missing module pyAvalonTools
964773	rdkit: Please build rdkit with inchi support	wontfix
983040	rdkit: doesn't ship with inchi support enabled	wontfix
983077	rdkit doesn't ship with inchi support enabled	wontfix
1055696	python3-rdkit: unusable with Python 3.12	sid, trixie
reprof (2) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1045897	reprof: Fails to build source after successful build	ftbfs, sid, trixie
1049597	reprof: Fails to build binary packages again after successful build	ftbfs, sid, trixie
ruby-crb-blast (1) Homepage: https://github.com/cboursnell/crb-blast Vcs Debian Ruby Team
1045625	ruby-crb-blast: Fails to build source after successful build	ftbfs, sid, trixie
seqan2 (2) Homepage: https://www.seqan.de/ Vcs Debian Med Packaging Team
917851	seqan2 2.4.0+dfsg-9: FTBFS, alignment problem	ftbfs
1047218	seqan2: Fails to build source after successful build	ftbfs, sid, trixie
seqan3 (1) Homepage: https://www.seqan.de/ Vcs Debian Med Packaging Team
1048951	seqan3: Fails to build source after successful build	ftbfs, sid, trixie
spoa (1) Homepage: https://github.com/rvaser/spoa Vcs Debian Med Packaging Team
1015667	spoa: ftbfs with LTO (link time optimization) enabled	experimental, sid, trixie
sra-sdk (2) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1040391	sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
1053411	sra-sdk: FTBFS with re2 >= 20230601 (which requires abseil)	upstream

Open bugs in suggested packages

2 serious, 2 important, 11 normal, 9 minor, 1 wishlist

bbhash (1) Homepage: https://github.com/rizkg/BBHash Vcs Debian Med Packaging Team
1049876	bbhash: FTBFS on 32 bit architectures	ftbfs, sid, trixie
bcbio (2) Homepage: https://github.com/bcbio/bcbio-nextgen Vcs Debian Med Packaging Team
928076	bcbio: Workflows not ready for non-developers to depend on.
1018312	bcbio: build-depends on python3-nose or uses it for autopkgtest
btllib (2) Homepage: https://github.com/bcgsc/btllib Vcs Debian Med Packaging Team
1022772	btllib: fails to build on 32-bit archs
1032358	btllib: Depends on libsdsl-dev, breaking installability when not needed	patch
concurrentqueue (1) Homepage: https://github.com/cameron314/concurrentqueue Vcs Debian Med Packaging Team
1043870	concurrentqueue: Fails to build source after successful build	ftbfs, sid, trixie
conda-package-handling (2) Homepage: https://github.com/conda/conda-package-handling Vcs Debian Med Packaging Team
976506	conda-package-handling: FTBFS in bullseye (failing tests)	bullseye, ftbfs, patch, pending, sid, trixie
1052523	conda-package-handling: please remove extraneous dependency on python3-six
ctdconverter (1) Homepage: https://github.com/WorkflowConversion/CTDConverter Vcs Debian Med Packaging Team
1045042	ctdconverter: Fails to build source after successful build	ftbfs, sid, trixie
freecontact (1) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1049797	freecontact: Fails to build binary packages again after successful build	ftbfs, sid, trixie
intake (2) Homepage: https://github.com/intake/intake Vcs Debian Med Packaging Team
1044050	intake: FTBFS with pandas 2.0
1050623	intake: autopkgtest needs update for dask 2023.8.0	ftbfs, sid, trixie
libmaus2 (1) Homepage: https://gitlab.com/german.tischler/libmaus2 Vcs Debian Med Packaging Team
934619	libmaus2 FTBFS (mostly 32bit): error: no matching function for call	fixed-upstream, ftbfs, help, upstream
minimap (1) Homepage: https://github.com/lh3/minimap Vcs Debian Med Packaging Team
1049859	minimap: Fails to build binary packages again after successful build	ftbfs, sid, trixie
python-ncls (1) Homepage: https://github.com/biocore-ntnu/ncls Vcs Debian Python Team
1046648	python-ncls: Fails to build source after successful build	ftbfs, sid, trixie
python-seqcluster (1) Homepage: https://github.com/lpantano/seqcluster Vcs Debian Med Packaging Team
1035277	python-seqcluster: please add autopkgtests (to add coverage for python3-numpy)
q2-demux (2) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
1045829	q2-demux: Fails to build source after successful build	ftbfs, sid, trixie
1053942	q2-demux: test failure with pandas 2.1
q2-quality-control (1) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
1044060	q2-quality-control: test failure with pandas 2.0
q2-taxa (2) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
1048362	q2-taxa: Fails to build source after successful build	ftbfs, sid, trixie
1053943	q2-taxa: test failure with pandas 2.1
q2-types (1) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
1053944	q2-types: test failure with pandas 2.1
q2templates (1) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
1044068	q2templates: FTBFS with pandas 2.0
r-bioc-affxparser (1) Homepage: https://bioconductor.org/packages/affxparser/ Vcs Debian R Packages Maintainers
1024580	r-bioc-affxparser: FTBFS on hppa - cannot handle R_PARISC_PCREL17F	ftbfs, patch
terraphast (1) Homepage: https://github.com/amkozlov/terraphast-one Vcs Debian Med Packaging Team
1049550	terraphast: Fails to build binary packages again after successful build	ftbfs, sid, trixie

Done bugs

bbhash (1) Homepage: https://github.com/rizkg/BBHash Vcs Debian Med Packaging Team
1043819	bbhash: Fails to build source after successful build	ftbfs, sid, trixie
gffread (1) Homepage: https://ccb.jhu.edu/software/stringtie/gff.shtml Vcs Debian Med Packaging Team
1033703	gffread: autopkgtest regression: test dependency not in testing	bookworm-ignore
hdf5 (1) Homepage: http://hdfgroup.org/HDF5/ Vcs Gilles Filippini
972537	please add --enable-ros3-vfd to the build options to allow RO access to HDF5 on S3
htsjdk (1) Homepage: https://samtools.github.io/htsjdk/ Vcs Debian Med Packaging Team
1055447	htsjdk: FTBFS: 35741 tests completed, 9 failed, 10 skipped	ftbfs, sid
libgoby-java (1) Homepage: https://campagnelab.org/software/goby/ Vcs Debian Med Packaging Team
1045612	libgoby-java: Fails to build source after successful build	ftbfs, sid, trixie
libthread-pool (1) Homepage: https://github.com/rvaser/thread_pool Vcs Debian Med Packaging Team
1032532	libthread-pool: fails to compile on 32bit platforms	patch
libvcflib (1) Homepage: https://github.com/vcflib/vcflib Vcs Debian Med Packaging Team
1057253	libvcflib: add support for loongarch64	patch
openmm (2) Homepage: https://simtk.org/projects/openmm Vcs Debichem Team
992180	openmm FTBFS on \!amd64/arm64/hurd-i386/i386/ppc64el	ftbfs
1054763	openmm: FTBFS: make[1]: *** [debian/rules:38: override_dh_auto_test] Error 2	ftbfs, sid, trixie
python-biom-format (1) Homepage: https://biom-format.org/ Vcs Debian Med Packaging Team
1056323	python-biom-format: FTBFS with Python 3.12 (test failures)	ftbfs, patch, sid, trixie
python-biopython (1) Homepage: https://biopython.org Vcs Debian Med Packaging Team
1055708	python-biopython's autopkg tests fail with Python 3.12	sid, trixie
python-cogent (1) Homepage: https://github.com/cogent3/cogent3 Vcs Debian Med Packaging Team
1030885	python-cogent: FTBFS (some tests require more than one CPU)	ftbfs, patch
python-pyani (1) Homepage: https://github.com/widdowquinn/pyani Vcs Debian Med Packaging Team
1044066	python-pyani: FTBFS with pandas 2.0
python-pyflow (1) Homepage: https://illumina.github.io/pyflow/ Vcs Debian Med Packaging Team
1054591	python3-pyflow: ${VERSION} not expanded in package metadata, causing PEP-440 validation failures
python-pysam (2) Homepage: https://pysam.readthedocs.org/en/latest Vcs Debian Med Packaging Team
1047165	python-pysam: Fails to build source after successful build	ftbfs, sid, trixie
1055505	python-pysam new upstream needed to build with Python 3.12	sid, trixie, upstream
python-sqt (1) Homepage: https://bitbucket.org/marcelm/sqt Vcs Debian Med Packaging Team
1056037	python-sqt ftbfs with Python 3.12	sid, trixie
pytorch (2) Homepage: https://pytorch.org/ Vcs Debian Deep Learning Team
994423	pytorch: Baseline violation on armhf	bookworm, bullseye, ftbfs, sid
1050175	Missing symbol when importing torch
q2-quality-control (1) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
1029700	q2-quality-control: tests fail with scipy 1.10
r-bioc-annotationhub (1) Homepage: https://bioconductor.org/packages/AnnotationHub/ Vcs Debian R Packages Maintainers
1034852	r-bioc-annotationhub: autopkgtest regression: download failed	bookworm-ignore
r-bioc-biomart (1) Homepage: https://bioconductor.org/packages/biomaRt/ Vcs Debian R Packages Maintainers
1039501	r-bioc-biomart: autopkgtest regression: Failure ('test_ensembl_ssl_settings.R:71')
r-bioc-structuralvariantannotation (1) Homepage: https://bioconductor.org/packages/StructuralVariantAnnotation/ Vcs Debian R Packages Maintainers
1025045	r-bioc-structuralvariantannotation: Test failures in autopkgtest	bookworm-ignore, upstream
rdkit (1) Homepage: http://www.rdkit.org Vcs Debichem Team
1054790	rdkit: FTBFS: make[1]: *** [debian/rules:88: override_dh_auto_configure] Error 2	ftbfs, sid, trixie
shasta (1) Homepage: https://github.com/chanzuckerberg/shasta Vcs Debian Med Packaging Team
1053509	shasta: autopkgtest regression on arm64: is memory suddenly not enough?
snakemake (1) Homepage: https://snakemake.readthedocs.io/ Vcs Debian Med Packaging Team
1045316	snakemake: Fails to build source after successful build	ftbfs, sid, trixie
toil (1) Homepage: https://github.com/BD2KGenomics/toil Vcs Debian Med Packaging Team
1031192	toil: FTBFS (The job JobClass is requesting 2.0 cores)	ftbfs
unifrac-tools (1) Homepage: https://github.com/biocore/unifrac-binaries Vcs Debian Med Packaging Team
1048281	unifrac-tools: Fails to build source after successful build	ftbfs, sid, trixie

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0