Summary

Bugs of task bio-ngs

Total bugs: 7

Open bugs: 5

Fixed bugs: 2

Links to other tasks

Tasks overview

Biology 376 (4285)

Biology development 173 (1873)

Next generation sequencing 5 (22)

Phylogeny 20 (261)

Cloud 78 (1071)

Content management 0 (0)

Covid-19 223 (2466)

Medical data 0 (0)

Dental 2 (12)

Epidemiology 20 (234)

Hospital information systems 3 (48)

Imaging 222 (1139)

Imaging development 93 (795)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 27 (198)

Practice 6 (45)

Psychology 11 (133)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 4 (16)

Tools 35 (227)

Typesetting 74 (629)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	0	1
important	0	0
normal	0	0
minor	4	0
wishlist	0	0

Summary bugs page of task Next generation sequencing

Task is in good shape^*

Open bugs in dependent packages

4 minor

bedtools (2) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
1104751	bedtools: FTBFS with GNUMAKEFLAGS=--shuffle=random	patch
1105730	bedtools: FTBFS with make --shuffle=random: src/utils/version/version.cpp:2:10: fatal error: version_git.h: No such file or directory	forky, ftbfs, sid, trixie
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396	last-align: Fails to build source after successful build	forky, ftbfs, sid, trixie
velvet (1) Homepage: https://github.com/dzerbino/velvet Vcs Debian Med Packaging Team
1105569	velvet: FTBFS with make --shuffle=reverse: Fatal error: can't create obj/autoOpen.o: No such file or directory	forky, ftbfs, sid, trixie

Open bugs in suggested packages

1 serious

python-anndata (1) Homepage: https://github.com/theislab/anndata Vcs Debian Med Packaging Team
1114293	python-anndata: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13	forky, ftbfs, sid

Done bugs

htslib (1) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
1111788	htslib: autopkgtest regression
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1106622	sra-sdk ftbfs with libxml 2.14.x from experimental	forky, ftbfs, patch, sid

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0