Summary

Bugs of task bio-ngs

Total bugs: 13

Open bugs: 9

Fixed bugs: 4

Links to other tasks

Tasks overview

Biology 102 (1139)

Biology development 49 (655)

Next generation sequencing 9 (141)

Phylogeny 5 (27)

Cloud 35 (360)

Content management 0 (0)

Medical data 1 (0)

Dental 1 (9)

Epidemiology 2 (39)

Hospital information systems 0 (0)

Imaging 216 (1229)

Imaging development 96 (1028)

Laboratory 0 (0)

Oncology 0 (0)

Pharmacology 0 (0)

Physics 26 (204)

Practice 3 (9)

Psychology 12 (152)

Rehabilitation 2 (39)

Research 0 (0)

Statistics 3 (7)

Tools 37 (239)

Typesetting 76 (585)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	2	0
important	4	0
normal	2	0
minor	1	0
wishlist	0	0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (141)^*

Open bugs in dependent packages

2 serious, 4 important, 2 normal, 1 minor

bcftools (4) Homepage: http://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
819617	FTBFS: any-i386 - floating point idiosyncracies	buster, sid, stretch
860682	bcftools: FTBFS on i386: Test failures	buster, sid, stretch
860704	python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1)	buster, sid, stretch
870060	bcftools FTBFS on big endian: 107 tests failed
bedtools (2) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
890116	bedtools FTBFS on 32bit: Tools failing: coverage intersect negativecontrol reldist shuffle split
890117	bedtools FTBFS on big endian: Tools failing: bamtobed bamtofastq coverage genomecov groupby intersect jaccard map merge multicov negativecontrol
picard-tools (1) Homepage: http://broadinstitute.github.io/picard/ Vcs Debian Med Packaging Team
880258	picard-tools: FTBFS: CollectRrbsMetricsTest.java:29: error: package org.testng does not exist	buster, sid
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
879620	sra-sdk: Please provide autopkgtest
tophat (1) Homepage: http://ccb.jhu.edu/software/tophat Vcs Debian Med Packaging Team
873866	tophat: Please add arm64

Open bugs in suggested packages

Done bugs

bedtools (1) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
894781	bedtools: autopkgtest fails while it succeeded in the past
htslib (3) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
749367	htslib FTBFS on testing for mips/mipsel	buster, moreinfo, patch, sid, stretch
800469	htslib FTBFS on armhf, bus error.	buster, patch, sid, stretch
849667	htslib: FTBFS on armhf: [test] Bus error	buster, patch, sid, stretch

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0