Summary

Bugs of task bio-ngs

Total bugs: 8

Open bugs: 8

Fixed bugs: 0

Links to other tasks

Tasks overview

Biology 303 (2706)

Biology development 137 (1155)

Next generation sequencing 8 (44)

Phylogeny 18 (216)

Cloud 72 (741)

Content management 0 (0)

Covid-19 195 (1857)

Medical data 0 (0)

Dental 2 (12)

Epidemiology 18 (204)

Hospital information systems 3 (33)

Imaging 205 (852)

Imaging development 79 (487)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 24 (159)

Practice 6 (45)

Psychology 11 (133)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 4 (16)

Tools 35 (227)

Typesetting 81 (632)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	0	2
important	0	0
normal	1	1
minor	4	0
wishlist	0	0

Summary bugs page of task Next generation sequencing

Consider looking into bugs of this task^*

Open bugs in dependent packages

1 normal, 4 minor

bedtools (2) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
1104751	bedtools: FTBFS with GNUMAKEFLAGS=--shuffle=random	patch
1105730	bedtools: FTBFS with make --shuffle=random: src/utils/version/version.cpp:2:10: fatal error: version_git.h: No such file or directory	ftbfs, sid, trixie
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396	last-align: Fails to build source after successful build	ftbfs, sid, trixie
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1106622	sra-sdk ftbfs with libxml 2.14.x from experimental	forky, ftbfs, patch, sid
velvet (1) Homepage: https://github.com/dzerbino/velvet Vcs Debian Med Packaging Team
1105569	velvet: FTBFS with make --shuffle=reverse: Fatal error: can't create obj/autoOpen.o: No such file or directory	ftbfs, sid, trixie

Open bugs in suggested packages

2 serious, 1 normal

python-anndata (3) Homepage: https://github.com/theislab/anndata Vcs Debian Med Packaging Team
1075928	python-anndata: tests fail with scipy 1.13
1094924	python-anndata compatibility with zarr3	fixed-upstream, ftbfs, sid, trixie
1100261	python-anndata: FTBFS: E AttributeError: module 'zarr' has no attribute 'DirectoryStore'	fixed-upstream, ftbfs, sid, trixie

Done bugs

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0