Debian Med Project
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Bugs of task bio-ngs
Total bugs: 15
Open bugs: 10
Fixed bugs: 5
Links to other tasks
Biology 105 (1282)
Phylogeny 8 (96)
Cloud 35 (402)
Medical data 1 (0)
Dental 1 (9)
Epidemiology 1 (30)
Imaging 200 (1074)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 0 (0)
Physics 28 (207)
Practice 3 (9)
Psychology 10 (140)
Research 0 (0)
Statistics 2 (4)
Tools 36 (245)
Typesetting 75 (583)
critical 0 0
grave 0 0
serious 2 0
important 4 0
normal 3 0
minor 1 0
wishlist 0 0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (150)*

Open bugs in dependent packages

2 serious, 4 important, 3 normal, 1 minor
819617 FTBFS: any-i386 - floating point idiosyncracies buster, sid, stretch
860682 bcftools: FTBFS on i386: Test failures buster, sid, stretch
860704 python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) buster, sid, stretch
870060 bcftools FTBFS on big endian: 107 tests failed
890116 bedtools FTBFS on 32bit: Tools failing: coverage intersect negativecontrol reldist shuffle split
890117 bedtools FTBFS on big endian: Tools failing: bamtobed bamtofastq coverage genomecov groupby intersect jaccard map merge multicov negativecontrol
894781 bedtools: autopkgtest fails while it succeeded in the past
880258 picard-tools: FTBFS: error: package org.testng does not exist buster, sid
879620 sra-sdk: Please provide autopkgtest
873866 tophat: Please add arm64

Open bugs in suggested packages

Done bugs

749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. buster, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, patch, sid, stretch
889506 last-align: Please make build compatible with -Wl,--as-needed patch
894329 picard-tools FTBFS with openjdk-9
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
Last update: Sat, 21 Apr 2018 18:31:21 -0000