Debian Med Project
Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Salsa page.
Summary
Bugs of task bio-ngs
Total bugs: 8
Open bugs: 8
Fixed bugs: 0
Links to other tasks
Tasks overview
Biology 323 (1741)
Phylogeny 15 (90)
Cloud 52 (288)
Covid-19 170 (1307)
Medical data 1 (1)
Dental 1 (3)
Epidemiology 3 (60)
Imaging 232 (1088)
Laboratory 1 (9)
Oncology 1 (3)
Pharmacology 1 (9)
Physics 28 (195)
Practice 7 (42)
Psychology 7 (39)
Research 0 (0)
Statistics 2 (4)
Tools 38 (241)
Typesetting 68 (556)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 0 0
important 1 0
normal 1 1
minor 5 0
wishlist 0 0

Summary bugs page of task Next generation sequencing

Consider looking into bugs of this task*

Open bugs in dependent packages

1 important, 1 normal, 5 minor
bcftools (2) Homepage: https://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
870060 bcftools FTBFS on big endian: 107 tests failed ftbfs, upstream
1043668 bcftools: Fails to build source after successful build ftbfs, sid, trixie
bedtools (1) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
1043957 bedtools: Fails to build source after successful build ftbfs, sid, trixie
bowtie (1) Homepage: http://bowtie-bio.sourceforge.net/ Vcs Debian Med Packaging Team
1043697 bowtie: Fails to build source after successful build ftbfs, sid, trixie
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396 last-align: Fails to build source after successful build ftbfs, sid, trixie
rna-star (1) Homepage: https://github.com/alexdobin/STAR/ Vcs Debian Med Packaging Team
1045634 rna-star: Fails to build source after successful build ftbfs, sid, trixie
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1040391 sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get

Open bugs in suggested packages

1 normal
python-anndata (1) Homepage: https://github.com/theislab/anndata Vcs Debian Med Packaging Team
1044072 python-anndata: FTBFS with pandas 2.0

Done bugs
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Sun, 01 Oct 2023 04:12:08 -0000