Debian Med Project
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Bugs of task bio-ngs
Total bugs: 28
Open bugs: 18
Fixed bugs: 10
Links to other tasks
Biology 119 (1036)
Phylogeny 5 (33)
Cloud 40 (399)
Medical data 1 (0)
Dental 0 (0)
Epidemiology 0 (0)
Imaging 218 (1143)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 3 (27)
Physics 30 (225)
Practice 2 (0)
Psychology 9 (100)
Research 0 (0)
Statistics 2 (4)
Tools 35 (209)
Typesetting 94 (653)
critical 0 0
grave 0 0
serious 1 0
important 6 0
normal 6 0
minor 1 0
wishlist 4 0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (177)*

Open bugs in dependent packages

1 serious, 6 important, 6 normal, 1 minor, 4 wishlist
819617 FTBFS: any-i386 - floating point idiosyncracies buster, sid, stretch
860682 bcftools: FTBFS on i386: Test failures buster, sid, stretch
860704 python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) buster, sid, stretch
870060 bcftools FTBFS on big endian: 107 tests failed
747337 broken autopkgtest: missing dependency, not testing installed package, test failures upstream
860655 blasr: FTBFS on i386: unsatisfiable build-dependencies: libpbseq-dev (>= 0~20160912), libpbbam-dev buster, sid, stretch
866137 htslib autopkgtest is broken in 1.4.1-2
879885 htslib FTCBFS: configures for the build architecture patch
881149 htslib FTBFS: test failures on i386 buster, sid
881170 htslib: please do not package cram/*.h headers
881359 htslib: please revert pkg-config change in fix_pkg-config.patch
881360 htslib: please do not package htslib*.mk makefile fragments
860665 libvcflib: FTBFS on i386: build-dependency not installable: libssw-dev buster, sid, stretch
860672 mhap: FTBFS on i386: build-dependency not installable: libssw-java buster, sid, stretch
880258 picard-tools: FTBFS: error: package org.testng does not exist buster, sid
879620 sra-sdk: Please provide autopkgtest
780816 tophat: contains and uses convience copy of samtools 0.1.18
873866 tophat: Please add arm64

Open bugs in suggested packages

Done bugs

881331 bcftools: needs a versioned dependency on libhts2
864439 bowtie: FTBFS on mips64el - /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
864448 bowtie FTBFS on mips64el: /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. buster, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, patch, sid, stretch
871314 htslib: new version break python-pysam sid
877670 bcftools FTBFS on armel, armhf and ppc64el patch
879886 libhts2: libhts2 needs to handle ABI changes
871315 samtools: new version breaks python-pysam sid
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
Last update: Sun, 19 Nov 2017 18:32:42 -0000