Debian Med Project
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Bugs of task bio-ngs
Total bugs: 26
Open bugs: 16
Fixed bugs: 10
Links to other tasks
Biology 144 (1426)
Phylogeny 9 (75)
Cloud 43 (507)
Medical data 1 (9)
Dental 0 (0)
Epidemiology 1 (9)
Imaging 190 (1158)
Laboratory 0 (0)
Oncology 2 (30)
Pharmacology 3 (27)
Physics 30 (288)
Practice 2 (9)
Psychology 8 (93)
Research 0 (0)
Statistics 2 (6)
Tools 35 (209)
Typesetting 64 (322)
critical 0 0
grave 0 0
serious 4 0
important 7 0
normal 2 0
minor 0 0
wishlist 3 0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (243)*

Open bugs in dependent packages

4 serious, 7 important, 2 normal, 3 wishlist
819617 FTBFS: any-i386 - floating point idiosyncracies buster, sid, stretch
860682 bcftools: FTBFS on i386: Test failures buster, sid, stretch
860704 python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) buster, sid, stretch
868958 bcftools FTBFS on 32bit: test failures
747337 broken autopkgtest: missing dependency, not testing installed package, test failures upstream
860655 blasr: FTBFS on i386: unsatisfiable build-dependencies: libpbseq-dev (>= 0~20160912), libpbbam-dev buster, sid, stretch
864439 bowtie: FTBFS on mips64el - /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
864448 bowtie FTBFS on mips64el: /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
853396 fastx-toolkit: ftbfs with GCC-7 buster, sid
848335 Filo should be removed from Debian after Stretch release since it is unmaintained and can be replaced newcomer
866137 htslib autopkgtest is broken in 1.4.1-2
866438 last-align: depends on obsolete python-imaging (replace with python3-pil or python-pil) buster, sid
860672 mhap: FTBFS on i386: build-dependency not installable: libssw-java buster, sid, stretch
820308 qiime: many unsatisfiable dependencies
868742 rna-star should remove s390x from the architecture list
780816 tophat: contains and uses convience copy of samtools 0.1.18

Open bugs in suggested packages

Done bugs

865006 bcftools FTBFS with htslib 1.4.1-2: [E::hts_idx_push] Region 536870912..536870913 cannot be stored in a tbi index. Try using a csi index with min_shift = 14, n_lvls >= 6 buster, sid
865060 bcftools FTBFS: Usage: test-regidx [OPTIONS] patch
853859 bwa: Segmentation fault with specific data set
749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
774109 htslib: FTBFS on hppa
800469 htslib FTBFS on armhf, bus error. buster, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, patch, sid, stretch
865010 htslib: use -fPIC to fix FTBFS on s390x patch
865012 htslib FTBFS on i386: test_vcf_{api,sweep} failed patch, upstream
865008 samtools FTBFS with htslib 1.4.1-2: error: conflicting types for 'errmod_t' buster, sid
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
Last update: Mon, 24 Jul 2017 18:42:41 -0000