Debian Med Project
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Summary
Bugs of task bio-ngs
Total bugs: 15
Open bugs: 11
Fixed bugs: 4
Links to other tasks
Biology 103 (1275)
Phylogeny 5 (34)
Cloud 34 (424)
Medical data 1 (0)
Dental 1 (9)
Epidemiology 3 (48)
Imaging 211 (1133)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 0 (0)
Physics 28 (279)
Practice 3 (9)
Psychology 12 (152)
Research 0 (0)
Statistics 3 (7)
Tools 37 (239)
Typesetting 78 (592)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 4 0
important 4 0
normal 3 0
minor 0 0
wishlist 0 0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (207)*

Open bugs in dependent packages

4 serious, 4 important, 3 normal
819617 FTBFS: any-i386 - floating point idiosyncracies buster, ftbfs, sid, stretch
860682 bcftools: FTBFS on i386: Test failures buster, ftbfs, sid, stretch
860704 python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) buster, ftbfs, sid, stretch
870060 bcftools FTBFS on big endian: 107 tests failed ftbfs
890116 bedtools FTBFS on 32bit: Tools failing: coverage intersect negativecontrol reldist shuffle split ftbfs
890117 bedtools FTBFS on big endian: Tools failing: bamtobed bamtofastq coverage genomecov groupby intersect jaccard map merge multicov negativecontrol ftbfs
905438 htslib: FTBFS on i386: 2 tests fail ftbfs
880258 picard-tools: FTBFS: CollectRrbsMetricsTest.java:29: error: package org.testng does not exist buster, sid
905645 picard-tools: autopkgtest regression: Option 'ALIGNMENT_STATUS' is required.
905706 libpicard-java-doc: ships /usr/share/javascript/jquery/jquery.min.js
873866 tophat: Please add arm64

Open bugs in suggested packages

Done bugs

749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. buster, ftbfs, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, ftbfs, patch, sid, stretch
902190 vcftools: CVE-2018-11099 CVE-2018-11129 CVE-2018-11130 fixed-upstream, security
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Thu, 16 Aug 2018 18:58:51 -0000