Debian Med Project
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Bugs of task bio-ngs
Total bugs: 13
Open bugs: 8
Fixed bugs: 5
Links to other tasks
Biology 266 (2364)
Biology development 129 (1084)
Phylogeny 10 (72)
Cloud 53 (642)
Covid-19 154 (1587)
Medical data 1 (1)
Dental 1 (3)
Epidemiology 13 (224)
Imaging 210 (1063)
Laboratory 1 (9)
Oncology 1 (3)
Pharmacology 1 (9)
Physics 28 (213)
Practice 6 (33)
Psychology 6 (46)
Research 0 (0)
Statistics 3 (7)
Tools 38 (243)
Typesetting 66 (529)
critical 0 0
grave 0 0
serious 2 0
important 3 0
normal 1 1
minor 1 0
wishlist 0 0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (120)*

Open bugs in dependent packages

2 serious, 3 important, 1 normal, 1 minor
870060 bcftools FTBFS on big endian: 107 tests failed ftbfs, upstream
1067374 blasr: FTBFS: ./obj-x86_64-linux-gnu/../extrautils/StoreQualityByContextFromCmpH5.cpp:40: multiple definition of `main'; toAfg.p/utils_ToAfg.cpp.o:./obj-x86_64-linux-gnu/../utils/ToAfg.cpp:30: first defined here ftbfs, sid, trixie
1048396 last-align: Fails to build source after successful build ftbfs, sid, trixie
1073098 libvcflib: replace to-be-removed markdown build-dependency pending
1074044 libvcflib: Improve support for loongarch64 pending, patch
1075253 maq: ftbfs with GCC-14 sid, trixie
1075617 velvet: ftbfs with GCC-14 sid, trixie

Open bugs in suggested packages

1 normal
1075928 python-anndata: tests fail with scipy 1.13

Done bugs

1074900 daligner: ftbfs with GCC-14 sid, trixie
1071343 r-bioc-hilbertvis: FTBFS: make_wiggle_vector.c:16:17: error: format not a string literal and no format arguments ftbfs
1040391 sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
1065961 sra-sdk: Please drop dependencies on python3-distutils ftbfs
1073105 ssake: replace to-be-removed markdown build-dependency trixie, sid
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
Last update: Mon, 15 Jul 2024 04:37:22 -0000