Summary

Bugs of task bio-ngs

Total bugs: 15

Open bugs: 10

Fixed bugs: 5

Links to other tasks

Tasks overview

Biology 105 (1282)

Biology development 34 (478)

Next generation sequencing 10 (150)

Phylogeny 8 (96)

Cloud 35 (402)

Content management 0 (0)

Medical data 1 (0)

Dental 1 (9)

Epidemiology 1 (30)

Hospital information systems 0 (0)

Imaging 200 (1074)

Imaging development 91 (956)

Laboratory 0 (0)

Oncology 0 (0)

Pharmacology 0 (0)

Physics 28 (207)

Practice 3 (9)

Psychology 10 (140)

Rehabilitation 2 (39)

Research 0 (0)

Statistics 2 (4)

Tools 36 (245)

Typesetting 75 (583)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	2	0
important	4	0
normal	3	0
minor	1	0
wishlist	0	0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (150)^*

Open bugs in dependent packages

2 serious, 4 important, 3 normal, 1 minor

bcftools (4) Homepage: http://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
819617	FTBFS: any-i386 - floating point idiosyncracies	buster, sid, stretch
860682	bcftools: FTBFS on i386: Test failures	buster, sid, stretch
860704	python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1)	buster, sid, stretch
870060	bcftools FTBFS on big endian: 107 tests failed
bedtools (3) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
890116	bedtools FTBFS on 32bit: Tools failing: coverage intersect negativecontrol reldist shuffle split
890117	bedtools FTBFS on big endian: Tools failing: bamtobed bamtofastq coverage genomecov groupby intersect jaccard map merge multicov negativecontrol
894781	bedtools: autopkgtest fails while it succeeded in the past
picard-tools (1) Homepage: http://broadinstitute.github.io/picard/ Vcs Debian Med Packaging Team
880258	picard-tools: FTBFS: CollectRrbsMetricsTest.java:29: error: package org.testng does not exist	buster, sid
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
879620	sra-sdk: Please provide autopkgtest
tophat (1) Homepage: http://ccb.jhu.edu/software/tophat Vcs Debian Med Packaging Team
873866	tophat: Please add arm64

Open bugs in suggested packages

Done bugs

htslib (3) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
749367	htslib FTBFS on testing for mips/mipsel	buster, moreinfo, patch, sid, stretch
800469	htslib FTBFS on armhf, bus error.	buster, patch, sid, stretch
849667	htslib: FTBFS on armhf: [test] Bus error	buster, patch, sid, stretch
last-align (1) Homepage: http://last.cbrc.jp/ Vcs Debian Med Packaging Team
889506	last-align: Please make build compatible with -Wl,--as-needed	patch
picard-tools (1) Homepage: http://broadinstitute.github.io/picard/ Vcs Debian Med Packaging Team
894329	picard-tools FTBFS with openjdk-9

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0