Debian Med Project
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Summary
Bugs of task bio-ngs
Total bugs: 7
Open bugs: 5
Fixed bugs: 2
Links to other tasks
Biology 220 (1467)
Biology development 129 (1031)
Phylogeny 9 (45)
Cloud 42 (366)
Covid-19 151 (1401)
Medical data 1 (1)
Dental 1 (3)
Epidemiology 8 (110)
Imaging 210 (987)
Laboratory 1 (9)
Oncology 1 (3)
Pharmacology 1 (9)
Physics 26 (174)
Practice 7 (42)
Psychology 6 (46)
Research 0 (0)
Statistics 3 (7)
Tools 38 (241)
Typesetting 61 (490)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 0 1
important 1 0
normal 2 0
minor 1 0
wishlist 0 0

Summary bugs page of task Next generation sequencing

Consider looking into bugs of this task*

Open bugs in dependent packages

1 important, 2 normal, 1 minor
870060 bcftools FTBFS on big endian: 107 tests failed ftbfs, upstream
1048396 last-align: Fails to build source after successful build ftbfs, sid, trixie
1040391 sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
1053411 sra-sdk: FTBFS with re2 >= 20230601 (which requires abseil) upstream

Open bugs in suggested packages

1 serious
1044072 python-anndata: FTBFS with pandas 2.0 trixie, sid

Done bugs

1062344 htslib: NMU diff for 64-bit time_t transition patch
1045634 rna-star: Fails to build source after successful build sid, trixie, ftbfs
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Wed, 28 Feb 2024 16:47:44 -0000