Debian Med Project
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Summary
Bugs of task bio-ngs
Total bugs: 11
Open bugs: 8
Fixed bugs: 3
Links to other tasks
Tasks overview
Biology 167 (1428)
Phylogeny 3 (21)
Cloud 37 (315)
Covid-19 134 (1151)
Medical data 1 (3)
Dental 0 (0)
Epidemiology 3 (18)
Imaging 231 (1075)
Laboratory 1 (9)
Oncology 3 (48)
Pharmacology 1 (9)
Physics 25 (180)
Practice 3 (27)
Psychology 7 (65)
Research 0 (0)
Statistics 0 (0)
Tools 33 (218)
Typesetting 67 (538)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 0 0
important 4 0
normal 4 0
minor 0 0
wishlist 0 0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (96)*

Open bugs in dependent packages

4 important, 4 normal
bcftools (4) Homepage: http://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
819617 FTBFS: any-i386 - floating point idiosyncracies bullseye, buster, ftbfs, sid, stretch
860682 bcftools: FTBFS on i386: Test failures bullseye, buster, ftbfs, sid, stretch
860704 python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) bullseye, buster, ftbfs, sid, stretch
870060 bcftools FTBFS on big endian: 107 tests failed ftbfs, upstream
blasr (1) Homepage: https://github.com/PacificBiosciences/blasr Vcs Debian Med Packaging Team
983631 blasr FTCBFS: multiple reasons patch
htslib (1) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
978835 htslib: ftbfs with autoconf 2.70 bookworm, sid
libvcflib (2) Homepage: https://github.com/vcflib/vcflib Vcs Debian Med Packaging Team
984139 freebayes: ftbfs with GCC-11 bookworm, fixed-upstream, sid, upstream
984212 libvcflib: ftbfs with GCC-11 bookworm, fixed-upstream, sid, upstream

Open bugs in suggested packages

Done bugs

htslib (3) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
749367 htslib FTBFS on testing for mips/mipsel bullseye, buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. bullseye, buster, ftbfs, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error bullseye, buster, ftbfs, patch, sid, stretch
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Fri, 16 Apr 2021 16:07:23 -0000