Debian Med Project
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Bugs of task bio-ngs
Total bugs: 21
Open bugs: 15
Fixed bugs: 6
Links to other tasks
Biology 116 (1040)
Phylogeny 5 (30)
Cloud 34 (372)
Medical data 1 (0)
Dental 0 (0)
Epidemiology 1 (9)
Imaging 208 (1113)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 3 (27)
Physics 27 (213)
Practice 2 (0)
Psychology 8 (93)
Research 0 (0)
Statistics 2 (6)
Tools 36 (219)
Typesetting 88 (602)
critical 0 0
grave 0 0
serious 5 0
important 5 0
normal 2 0
minor 0 0
wishlist 3 0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (243)*

Open bugs in dependent packages

5 serious, 5 important, 2 normal, 3 wishlist
819617 FTBFS: any-i386 - floating point idiosyncracies buster, sid, stretch
860682 bcftools: FTBFS on i386: Test failures buster, sid, stretch
860704 python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) buster, sid, stretch
870060 bcftools FTBFS on big endian: 107 tests failed
747337 broken autopkgtest: missing dependency, not testing installed package, test failures upstream
860655 blasr: FTBFS on i386: unsatisfiable build-dependencies: libpbseq-dev (>= 0~20160912), libpbbam-dev buster, sid, stretch
864439 bowtie: FTBFS on mips64el - /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
864448 bowtie FTBFS on mips64el: /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
866137 htslib autopkgtest is broken in 1.4.1-2
871314 htslib: new version break python-pysam sid
860672 mhap: FTBFS on i386: build-dependency not installable: libssw-java buster, sid, stretch
820308 qiime: many unsatisfiable dependencies
871315 samtools: new version breaks python-pysam sid
780816 tophat: contains and uses convience copy of samtools 0.1.18
873866 tophat: Please add arm64

Open bugs in suggested packages

Done bugs

868958 bcftools FTBFS on 32bit: test failures
871234 cufflinks: FTBFS with GCC-7: error: type/value mismatch at argument 1 in template parameter list for 'template<class _Tp> struct std::hash' buster, help, sid
853396 fastx-toolkit: ftbfs with GCC-7 buster, sid
749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. buster, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, patch, sid, stretch
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
Last update: Wed, 20 Sep 2017 19:25:48 -0000