Summary

Bugs of task bio-ngs

Total bugs: 8

Open bugs: 5

Fixed bugs: 3

Links to other tasks

Tasks overview

Biology 307 (2707)

Biology development 142 (1200)

Next generation sequencing 5 (21)

Phylogeny 18 (201)

Cloud 72 (726)

Content management 0 (0)

Covid-19 195 (1894)

Medical data 0 (0)

Dental 2 (12)

Epidemiology 19 (219)

Hospital information systems 3 (33)

Imaging 207 (882)

Imaging development 81 (517)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 25 (174)

Practice 6 (45)

Psychology 11 (133)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 4 (16)

Tools 35 (227)

Typesetting 81 (632)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	0	0
important	0	0
normal	1	0
minor	4	0
wishlist	0	0

Summary bugs page of task Next generation sequencing

Task is in good shape^*

Open bugs in dependent packages

1 normal, 4 minor

bedtools (2) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
1104751	bedtools: FTBFS with GNUMAKEFLAGS=--shuffle=random	patch
1105730	bedtools: FTBFS with make --shuffle=random: src/utils/version/version.cpp:2:10: fatal error: version_git.h: No such file or directory	ftbfs, sid, trixie
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396	last-align: Fails to build source after successful build	ftbfs, sid, trixie
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1106622	sra-sdk ftbfs with libxml 2.14.x from experimental	sid, patch, ftbfs, forky
velvet (1) Homepage: https://github.com/dzerbino/velvet Vcs Debian Med Packaging Team
1105569	velvet: FTBFS with make --shuffle=reverse: Fatal error: can't create obj/autoOpen.o: No such file or directory	ftbfs, sid, trixie

Open bugs in suggested packages

Done bugs

python-anndata (3) Homepage: https://github.com/theislab/anndata Vcs Debian Med Packaging Team
1075928	python-anndata: tests fail with scipy 1.13
1094924	python-anndata compatibility with zarr3	ftbfs, sid, fixed-upstream, trixie
1100261	python-anndata: FTBFS: E AttributeError: module 'zarr' has no attribute 'DirectoryStore'	fixed-upstream, trixie, sid, ftbfs

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0