Debian Med Project
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Summary
Bugs of task bio-ngs
Total bugs: 6
Open bugs: 1
Fixed bugs: 5
Links to other tasks
Tasks overview
Biology 166 (1313)
Phylogeny 7 (30)
Cloud 28 (224)
Covid-19 177 (1713)
Medical data 0 (0)
Dental 2 (18)
Epidemiology 16 (193)
Imaging 212 (949)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 2 (60)
Physics 26 (195)
Practice 9 (99)
Psychology 19 (102)
Research 0 (0)
Statistics 14 (30)
Tools 34 (227)
Typesetting 73 (630)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 0 0
important 1 0
normal 0 0
minor 0 0
wishlist 0 0

Summary bugs page of task Next generation sequencing

Task is in good shape*

Open bugs in dependent packages

1 important
vcftools (1) Homepage: https://vcftools.github.io/ Vcs Debian Med Packaging Team
1151888 vcftools: Possible attempt to escape whitespace in qw() list with Perl 5.44 help, pending

Open bugs in suggested packages

Done bugs

bcftools (1) Homepage: https://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
1144268 Remove depends on sse2-support (baseline now)
bedtools (1) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
1105730 bedtools: FTBFS with make --shuffle=random: src/utils/version/version.cpp:2:10: fatal error: version_git.h: No such file or directory forky, ftbfs, sid, trixie
htslib (1) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
1131493 htslib: CVE-2026-31962 CVE-2026-31963 CVE-2026-31964 CVE-2026-31965 CVE-2026-31966 CVE-2026-31967 CVE-2026-31968 CVE-2026-31969 CVE-2026-31970 CVE-2026-31971 security, upstream
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396 last-align: Fails to build source after successful build forky, ftbfs, sid, trixie
velvet (1) Homepage: https://github.com/dzerbino/velvet Vcs Debian Med Packaging Team
1105569 velvet: FTBFS with make --shuffle=reverse: Fatal error: can't create obj/autoOpen.o: No such file or directory forky, ftbfs, sid, trixie
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Wed, 28 Oct 2026 04:09:32 -0000