Summary
Bugs of task
bio
Total bugs:
324
Open bugs:
273
Fixed bugs:
51
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
0 |
0 |
| serious |
19 |
15 |
| important |
76 |
18 |
| normal |
50 |
23 |
| minor |
30 |
6 |
| wishlist |
29 |
7 |
|
Summary bugs page of task Biology
Immediately looking into bugs of the dependencies of this task is advised (2565)*
Open bugs in dependent packages
19 serious, 76 important, 50 normal, 30 minor, 29 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
|
|
| 1066334 |
acedb: FTBFS: acein.c:2045:15: error: implicit declaration of function âadd_historyâ [-Werror=implicit-function-declaration] |
ftbfs, help, sid, trixie |
|
|
| 1096281 |
aegean: ftbfs with GCC-15 |
forky, sid |
|
|
| 1067631 |
src:altree: autopkgtest timeouts on armel, armhf and ppc64el |
|
| 1096300 |
altree: ftbfs with GCC-15 |
forky, sid |
| 1102872 |
altree: add perl-xs-dev to Build-Depends |
|
|
|
| 1096305 |
ampliconnoise: ftbfs with GCC-15 |
forky, sid |
|
|
| 1094842 |
augur: Please update to latest upstream 28.0.0, released 2025-01-30 |
|
|
|
| 1040385 |
libball1.5-data: broken symlink: /usr/share/BALL-1.5/BALLView/html -> ../../doc/libball1.5-data/BALLView/html |
|
| 1060741 |
ball: Please port from sip4 to sip6 |
help, upstream, trixie, sid, confirmed |
|
|
| 865130 |
reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' |
upstream, ftbfs |
|
|
| 1043686 |
beads: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1096362 |
beads: ftbfs with GCC-15 |
forky, sid |
|
|
| 1032034 |
beagle: broken package on non arm64/amd64 architectures |
wontfix |
|
|
| 1025424 |
beast-mcmc: please enable autopkgtest |
help |
| 1103836 |
Depends on an EOLed version of libitext |
|
|
|
| 1025830 |
beauti2 fails to start |
help |
|
|
| 1104751 |
bedtools: FTBFS with GNUMAKEFLAGS=--shuffle=random |
patch |
|
|
| 1096367 |
bifrost: ftbfs with GCC-15 |
forky, sid |
|
|
| 1085363 |
bioxtasraw: Python SyntaxWarning |
|
|
|
| 1035121 |
bitseq: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1104172 |
btlib - breaks autopkgtests for nthash. |
|
|
|
| 1104777 |
bustools: do not hardcode CFLAGS and CXXFLAGS |
patch |
|
|
| 1032036 |
chromhmm: broken package on non arm64/amd64 architectures |
wontfix |
|
|
| 1096450 |
coils: ftbfs with GCC-15 |
forky, sid |
|
|
| 1072286 |
coot: add autopkgtest for coot executable |
patch |
|
|
| 1035182 |
cutesv: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 982869 |
datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors |
ftbfs, upstream |
| 1044977 |
datamash: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1096504 |
datamash: ftbfs with GCC-15 |
forky, sid |
|
|
| 903886 |
dawg: Test suite fails |
upstream |
|
|
| 1096554 |
dwgsim: ftbfs with GCC-15 |
forky, sid |
|
|
| 862118 |
ea-utils: New upstream version available |
|
|
|
| 682042 |
emboss-data: ships bulky taxonomy and gene ontology data |
|
| 986043 |
emboss: uses media types that are not registered |
|
| 1069098 |
emboss: all executables segfault on s390x |
bookworm, bullseye, sid, trixie |
| 1069142 |
emboss: build time testsuite is failing silently |
|
| 1096578 |
emboss: ftbfs with GCC-15 |
forky, sid |
|
|
| 1088492 |
python3-emperor-doc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1087184 |
examl: fails to run with tight cores count |
|
|
|
| 1096607 |
fasta3: ftbfs with GCC-15 |
forky, sid |
|
|
| 1096612 |
fastlink: ftbfs with GCC-15 |
forky, sid |
|
|
| 1096651 |
freecontact: ftbfs with GCC-15 |
forky, sid |
|
|
| 750139 |
gamgi: Conflicting return types of function gamgi_engine_iarray_push |
upstream |
| 967366 |
gamgi: depends on deprecated GTK 2 |
|
| 1044244 |
gamgi: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 715937 |
[Mayhem] Bug report on garlic: garlic crashes with exit status 139 |
|
| 749656 |
garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour |
|
|
|
| 929564 |
gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit |
|
| 983926 |
gatb-core: ftbfs with -march=x86-64-v2 |
|
|
|
| 1039206 |
gbrowse: ships sysv-init script without systemd unit |
|
| 1102804 |
gbrowse: add perl-xs-dev to Build-Depends |
|
|
|
| 967379 |
gdpc: depends on deprecated GTK 2 |
wontfix |
| 982103 |
gdpc: autopkgtest failure on s390x |
|
|
|
| 1092841 |
genomicsdb: FTBFS with fmtlib 11.1 |
ftbfs |
| 1103009 |
genomicsdb: FTBFS in testing/arm64: tests failed |
ftbfs, sid, trixie |
|
|
| 732691 |
Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button |
upstream |
|
|
| 967392 |
ghemical: depends on deprecated GTK 2 |
|
| 967865 |
ghemical: depends on deprecated libglade2 |
sid, trixie |
| 996006 |
ghemical: Segmentation fault when starting |
|
| 1066986 |
ghemical: FTBFS: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/libghemical.so: undefined reference to `sc::RenderedBallMolecule::RenderedBallMolecule(sc::Ref<sc::KeyVal> const&)' |
sid, ftbfs, trixie |
| 1089786 |
ghemical: uninstallable since transition to openmpi version 5 |
|
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 983942 |
gromacs: ftbfs with -march=x86-64-v3 |
|
|
|
| 1053499 |
hilive: flaky autopkgtest on several archs: segfault |
upstream |
|
|
| 958244 |
Use system libinih-dev |
|
| 986193 |
hinge: no autopkgtest available yet |
newcomer |
| 1035178 |
hinge: please add autopkgtests (to add coverage for python3-numpy) |
|
| 1036500 |
hinge: please add autopkgtests (to add coverage for python3-matplotlib) |
|
|
|
| 1048028 |
hisat2: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1076524 |
hisat2: autopkgtest uses absurd amount of memory on s390x |
|
|
|
| 1103312 |
hmmer: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1096850 |
iqtree: ftbfs with GCC-15 |
forky, sid |
|
|
| 1104128 |
jalview: Update/add debconf template translation [INTL:ca] |
l10n, patch |
|
|
| 1021557 |
jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) |
upstream |
| 1102846 |
jellyfish: add perl-xs-dev to Build-Depends |
|
|
|
| 875328 |
jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined |
wontfix, upstream |
|
|
| 1095078 |
jmodeltest: reduce the permissions on /var/log/jmodeltest |
|
| 1099239 |
jmodeltest: FTBFS: rc/main/java/es/uvigo/darwin/jmodeltest/io/HtmlReporter.java:38: error: cannot find symbol |
ftbfs, sid, trixie |
|
|
| 872418 |
jmol: Weblinks in Help do not work |
|
|
|
| 1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
|
|
| 1103315 |
kineticstools: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1081273 |
meryl: Meryl should be packaged separately from new upstream location |
|
|
|
| 1009159 |
kmerresistance: Add autopkgtest |
newcomer |
|
|
| 1048396 |
last-align: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1097151 |
lastz: ftbfs with GCC-15 |
forky, sid |
|
|
| 967603 |
ltrsift: depends on deprecated GTK 2 |
upstream, wontfix |
| 1048669 |
ltrsift: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1097352 |
mafft: ftbfs with GCC-15 |
forky, sid |
|
|
| 1045227 |
massxpert: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1084296 |
massxpert: FTBFS: rror: static assertion failed: No Q_OBJECT in the class passed to QObject::findChildren |
ftbfs, trixie, sid |
|
|
| 1097365 |
massxpert2: ftbfs with GCC-15 |
forky, sid |
|
|
| 1088028 |
megahit: consider unembedding parallel-hashmap |
|
|
|
| 1048833 |
melting: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1035175 |
metaphlan: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1035188 |
microbegps: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1097402 |
minexpert2: ftbfs with GCC-15 |
forky, sid |
|
|
| 1099518 |
minimap2: error: type mismatch in conditional expression on loong64 |
patch |
|
|
| 1088472 |
multiqc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1097430 |
nanopolish: ftbfs with GCC-15 |
forky, sid |
|
|
| 1103286 |
Autopkgtest not working in s390x architecture |
|
|
|
| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
| 984871 |
ncbi-blast+: Missing headers for shared libraries |
|
| 1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
| 1077777 |
ncbi-blast+: makeblastdb yields broken DBs on s390x (BE generally?) |
upstream |
| 1080479 |
ncbi-blast+: failure to create blastdb v5 on riscv64 |
|
|
|
| 1048966 |
ncbi-igblast: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1097435 |
ncbi-igblast: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097436 |
ncbi-seg: ftbfs with GCC-15 |
forky, sid |
|
|
| 225651 |
ncbi-tools-x11: want Cn3D++ |
|
|
|
| 1049529 |
norsnet: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 1025370 |
ntcard: ftbfs with nthash 2.3.0 |
ftbfs, upstream |
|
|
| 1047870 |
obitools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1068052 |
openms: FTBFS on armel,armhf (error: âQOpenGLFunctions_2_0â does not name a type) |
ftbfs |
|
|
| 1069488 |
parsinsert: FTBFS on armhf: make[1]: *** [debian/rules:30: override_dh_auto_test] Error 1 |
ftbfs, confirmed, trixie, sid |
|
|
| 1091721 |
pbsuite: autopkgtest regression in testing |
confirmed |
|
|
| 1103318 |
pftools: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1097575 |
phast: ftbfs with GCC-15 |
forky, sid |
|
|
| 1047303 |
plast: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1097619 |
plast: ftbfs with GCC-15 |
forky, sid |
|
|
| 1074546 |
FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) |
ftbfs |
| 1093109 |
pplacer: FTBFS with OCaml 5.3.0 (error in C stubs) |
ftbfs |
|
|
| 1078584 |
prime-phylo fails to build with mpi-defaults 1.17 on armhf |
wontfix |
| 1097647 |
prime-phylo: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097649 |
primer3: ftbfs with GCC-15 |
forky, sid |
|
|
| 1091575 |
probabel: FTBFS on i386: dh_auto_test: error: make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 returned exit code 2 |
ftbfs, sid, trixie |
|
|
| 1048520 |
psortb: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1102847 |
psortb: add perl-xs-dev to Build-Depends |
|
|
|
| 709306 |
pymol: Crashes when running within xrdp/vnc (no 3D support) |
|
| 765794 |
Race condition when running scripts in "stdin" mode |
|
| 783653 |
pymol: Segmentation fault immediately after loading pdb |
|
|
|
| 1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
| 1090269 |
python-cogent: FTBFS: E ImportError: Numba could not be imported. |
ftbfs |
|
|
| 1085900 |
python-csb: Python SyntaxWarning |
pending |
|
|
| 1103326 |
qcat: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1036374 |
[INTL:es] Spanish translation of qcumber debconf template |
l10n, patch |
| 1036506 |
qcumber: please add autopkgtests (to add coverage for python3-matplotlib) |
|
| 1049117 |
qcumber: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1068856 |
[INTL:sv] Swedish strings for qcumber debconf |
l10n, patch |
| 1088515 |
qcumber: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
| 1103459 |
qcumber: [INTL:pt_BR] Brazilian Portuguese debconf templates translation |
l10n, patch |
|
|
| 1076314 |
qiime hard-codes python 3.11 without depending on it |
sid, trixie, pending |
| 1084668 |
qiime: removal of Python standard libraries in Python 3.13 |
fixed-upstream, pending |
|
|
| 642084 |
qutemol: Cannot start the program |
|
| 939033 |
qutemol: Uses GifQuantizeBuffer - stops working with newer giflib |
|
|
|
| 1085689 |
r-bioc-mofa: Python SyntaxWarning |
|
|
|
| 1103201 |
r-cran-genabel: FTBFS: fexact.c:181:37: error: implicit declaration of function 'Calloc' |
ftbfs, sid, trixie |
|
|
| 1081161 |
r-cran-sdmtools: removed from CRAN repository |
|
|
|
| 1084108 |
r-cran-spp: removed from CRAN repository |
|
|
|
| 1081175 |
r-cran-tcr: removed from CRAN repository |
|
|
|
| 1097767 |
racon: ftbfs with GCC-15 |
forky, sid |
|
|
| 1047092 |
rambo-k: Fails to build source after successful build |
pending, ftbfs, sid, trixie |
|
|
| 909766 |
Use Debian packaged spdlog instead of code copy of old version |
help, upstream |
| 976588 |
rapmap: FTBFS on arm64 (when trying to build arch:all) |
trixie, bullseye, ftbfs, sid, bookworm |
| 1097770 |
rapmap: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097771 |
rasmol: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097773 |
raster3d: ftbfs with GCC-15 |
forky, sid |
|
|
| 1099282 |
rdp-classifier: FTBFS: src/edu/msu/cme/rdp/classifier/train/validation/distance/BoxPlotUtils.java:28: error: cannot find symbol |
trixie, confirmed, ftbfs, sid, help |
|
|
| 1097779 |
readseq: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097784 |
relion: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097803 |
roguenarok: ftbfs with GCC-15 |
forky, sid |
|
|
| 1088027 |
salmon: consider unembedding parallel-hashmap |
|
| 1097838 |
salmon: ftbfs with GCC-15 |
forky, sid |
| 1103327 |
salmon: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1015654 |
sambamba: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
| 1095434 |
sambamba: rare segmentation fault makes nanosv autopkgtest flaky |
|
|
|
| 917851 |
seqan2 2.4.0+dfsg-9: FTBFS, alignment problem |
ftbfs |
| 1047218 |
seqan2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1049489 |
seqprep: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 967743 |
seqtools: depends on deprecated GTK 2 |
|
| 1047310 |
seqtools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1097885 |
sim4: ftbfs with GCC-15 |
forky, sid |
|
|
| 848589 |
snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated) |
|
|
|
| 1097906 |
soapaligner: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097907 |
soapdenovo: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097909 |
soapdenovo2: ftbfs with GCC-15 |
forky, sid |
|
|
| 1072346 |
sortmerna: please update autopkgtest |
newcomer |
| 1097910 |
sortmerna: ftbfs with GCC-15 |
forky, sid |
|
|
| 1086015 |
build for all supported python3 |
|
| 1088026 |
spades: consider unembedding parallel-hashmap |
|
| 1097913 |
spades: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097922 |
spoa: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097934 |
staden: ftbfs with GCC-15 |
forky, sid |
|
|
| 1048111 |
surankco: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1097956 |
sweed: ftbfs with GCC-15 |
forky, sid |
|
|
| 956848 |
t-coffee: should use "example" blastpgp.pl |
|
|
|
| 1097993 |
thesias: ftbfs with GCC-15 |
forky, sid |
|
|
| 1098008 |
tnseq-transit: ftbfs with GCC-15 |
forky, sid |
|
|
| 1098011 |
tracetuner: ftbfs with GCC-15 |
forky, sid |
|
|
| 846481 |
src:treeviewx: Please remove statically linked code copy of libncl |
|
|
|
| 981874 |
trinityrnaseq: flaky autopkgtest |
bookworm, sid, trixie, bullseye |
|
|
| 1047488 |
twopaco: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1098031 |
ugene: ftbfs with GCC-15 |
forky, sid |
|
|
| 980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
| 1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
|
| 1071816 |
umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> |
ftbfs |
|
|
| 1089115 |
umis: tracebacks normally fatal during autopkgtest runs |
upstream |
|
|
| 976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bullseye, trixie, ftbfs, bookworm, sid |
| 987184 |
vg -- excessive variants built, and not tested |
|
| 1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
| 1089275 |
vg: FTBFS with make 4.4.1 |
trixie, ftbfs, sid |
|
|
| 1098098 |
wise: ftbfs with GCC-15 |
forky, sid |
Open bugs in suggested packages
15 serious, 18 important, 23 normal, 6 minor, 7 wishlist
|
|
| 1089541 |
override_dh_auto_build Error |
|
| 1100471 |
[INTL:es] Spanish translation of arb debconf template |
l10n, patch |
| 1102185 |
arb: Update/add debconf template translation [INTL:ca] |
l10n, patch |
| 1102816 |
arb: add perl-xs-dev to Build-Depends |
|
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
|
|
| 1085412 |
catfishq: Python SyntaxWarning |
|
|
|
| 1030327 |
science-numericalcomputation: please stop recommending python3-theano as it is being removed |
|
| 1032638 |
please drop transitional package science-electronics from src:debian-science |
|
| 1055339 |
debian-science: please replace recommendation of src:dolfin by src:fenics-dolfinx |
|
|
|
| 1081508 |
getdata: homepage defunct |
|
|
|
| 638753 |
libhdf5-serial-1.8.7: threadsafe memory leaks |
moreinfo |
| 716008 |
[Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139 |
|
| 716010 |
[Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139 |
|
| 716011 |
[Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139 |
|
| 716012 |
[Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139 |
|
| 839784 |
libhdf5-dev: pkg-config file references ONLY the C library |
|
| 968559 |
libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing |
moreinfo |
| 1023446 |
libhdf5-openmpi-dev: h5pcc configured as static build |
wontfix |
| 1040862 |
hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin |
moreinfo |
| 1052250 |
pkg-config file incorrect for static linking |
|
| 1100440 |
hdf5: CVE-2025-2153 |
security, upstream |
| 1103531 |
hdf5: CVE-2025-2926 |
security, upstream |
| 1103532 |
hdf5: CVE-2025-2925 |
security, upstream |
| 1103533 |
hdf5: CVE-2025-2924 |
security, upstream |
| 1103534 |
hdf5: CVE-2025-2923 |
security, upstream |
| 1103536 |
hdf5: CVE-2025-2915 |
security, upstream |
| 1103537 |
hdf5: CVE-2025-2914 |
security, upstream |
| 1103538 |
hdf5: CVE-2025-2913 |
security, upstream |
| 1103539 |
hdf5: CVE-2025-2912 |
security, upstream |
| 1103540 |
hdf5: CVE-2025-2310 |
security, upstream |
| 1103541 |
hdf5: CVE-2025-2309 |
security, upstream |
| 1103542 |
hdf5: CVE-2025-2308 |
security, upstream |
|
|
| 1063953 |
intake: autopkgtest regression with pytest 8 |
|
| 1064752 |
intake: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 |
ftbfs, sid, trixie |
| 1067969 |
python3-intake: Please replace python3-appdirs dependency with platformdirs |
trixie, sid, pending, patch |
| 1088416 |
intake: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
| 1094915 |
intake commatibility with zarr3 |
|
|
|
| 1067957 |
FTBFS: error: call of overloaded â__gmp_expr(__time64_t&)â is ambiguous |
trixie, ftbfs, sid |
|
|
| 1082368 |
FTBFS: TestIntegration.testIntegration: AssertionError: 1 != 0 |
ftbfs, confirmed |
|
|
| 1104599 |
pyranges: FTBFS randomly: failing tests |
ftbfs, sid, trixie |
|
|
| 1047039 |
pyrle: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1075928 |
python-anndata: tests fail with scipy 1.13 |
|
| 1094924 |
python-anndata compatibility with zarr3 |
ftbfs, sid, fixed-upstream, trixie |
| 1100261 |
python-anndata: FTBFS: E AttributeError: module 'zarr' has no attribute 'DirectoryStore' |
fixed-upstream, trixie, sid, ftbfs |
|
|
| 1058482 |
python-loompy: please (temporarily) drop python3-numba dependencies |
|
| 1083659 |
python-loompy: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
| 1085932 |
python-loompy: Python SyntaxWarning |
|
| 1090279 |
python-loompy: FTBFS: E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv' |
ftbfs |
|
|
| 1046648 |
python-ncls: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1076318 |
q2-alignment hard-codes python 3.11 without depending on it |
sid, trixie |
|
|
| 1104285 |
q2-cutadapt: Fix unstable/amd64 debci failure |
|
|
|
| 1076315 |
q2-demux hard-codes python 3.11 without depending on it |
sid, trixie |
|
|
| 1071882 |
q2-feature-classifier: FTBFS: unsatisfiable build-dependencies |
ftbfs |
|
|
| 1076317 |
q2-phylogeny hard-codes python 3.11 without depending on it |
|
|
|
| 1076914 |
q2-quality-control: FTBFS with the nocheck build profile |
ftbfs |
|
|
| 1065333 |
q2-types: test data heavily outweighs actual code |
|
| 1076316 |
q2-types hard-codes python 3.11 without depending on it |
sid, trixie |
| 1104050 |
q2-types: Fix unstable/amd64 debci failure |
patch |
|
|
| 1076080 |
q2cli: FTBFS in sid (python3.12) |
ftbfs |
|
|
| 1088514 |
q2templates: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1083247 |
r-bioc-org.hs.eg.db: homepage defunct, standardize |
|
|
|
| 1036681 |
relion-cuda: FTBFS with CUDA 12: nvcc fatal : Value 'sm_35' is not defined for option 'gpu-architecture' |
sid, ftbfs, trixie |
| 1040128 |
relion-cuda: FTBFS with cub 2.0.1: error: function "cub::Debug" has already been defined |
ftbfs, sid, trixie |
|
|
| 1049268 |
resfinder-db: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 986200 |
sift: Please provide autopkgtest |
newcomer |
| 987606 |
sift: does not autobuild on buildds |
|
| 1103329 |
sift: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1102852 |
vienna-rna: add perl-xs-dev to Build-Depends |
|
Done bugs
|
|
| 1012893 |
anfo: ftbfs with GCC-12 |
help, bookworm, sid, ftbfs, trixie |
| 1061888 |
anfo: NMU diff for 64-bit time_t transition |
patch |
|
|
| 1101873 |
src:bali-phy: fails to migrate to testing for too long: FTBFS on armel and armhf |
ftbfs, sid, trixie |
|
|
| 1058469 |
bioxtasraw: please (temporarily) drop python3-numba dependencies |
patch |
|
|
| 1032358 |
btllib: Depends on libsdsl-dev, breaking installability when not needed |
patch |
| 1058455 |
btllib: add build support for loongarch64 |
patch |
|
|
| 1092364 |
cluster3: needs rebuild for Python 3.13 as default |
ftbfs |
|
|
| 1103579 |
coot: autopkgtest regression: ImportError |
|
|
|
| 1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
ftbfs |
|
|
| 1103372 |
freecontact: FTBFS in testing/armel: make[1]: *** [Makefile:475: all-recursive] Error 1 |
sid, trixie, ftbfs |
| 1104497 |
freecontact: implicitly build-depends libgfortran-12-dev, will FTBFS without gcc-12 |
ftbfs |
|
|
| 1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
|
|
| 915807 |
hdf5: CVE-2017-17507 |
security, upstream |
|
|
| 1082721 |
khmer: FTBFS: failing tests |
ftbfs |
| 1085660 |
khmer: Python SyntaxWarning |
|
|
|
| 1104392 |
kissplice: FTBFS randomly: dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j8 test ARGS\+=--verbose ARGS\+=-j8 returned exit code 2 |
ftbfs, trixie, sid |
|
|
| 1075199 |
libpwiz: ftbfs with GCC-14 |
sid, ftbfs, patch, trixie |
|
|
| 1015525 |
libssw: ftbfs with LTO (link time optimization) enabled |
experimental, sid, trixie |
|
|
| 1097434 |
ncbi-blast+: ftbfs with GCC-15 |
forky, sid |
| 1100037 |
ncbi-blast+: missing commands (blastn_vdb, etc.) |
|
|
|
| 964082 |
parsinsert fails it's tests when built with -O2 |
bookworm, trixie, sid, bullseye |
|
|
| 1104275 |
pique: autopkgtest failure, possibly not allowed in main |
confirmed, upstream |
|
|
| 1103196 |
plip: FTBFS: help2man: can't get `--help' info from /<<PKGBUILDDIR>>/debian/plip/usr/bin/plipcmd |
sid, trixie, ftbfs |
|
|
| 1085786 |
porechop: Python SyntaxWarning |
|
|
|
| 1103912 |
provean: autopkgtest failures prevent testing migration |
|
|
|
| 1103074 |
FTBFS: failing tests on i386 |
ftbfs, trixie, sid |
|
|
| 1054591 |
python3-pyflow: ${VERSION} not expanded in package metadata, causing PEP-440 validation failures |
|
| 1081243 |
python3-pyflow: helloWorld and other examples not runnable, possibly since python2 dropped |
upstream, wontfix |
|
|
| 1034852 |
r-bioc-annotationhub: autopkgtest regression: download failed |
bookworm-ignore |
|
|
| 1097762 |
r-bioc-cner: ftbfs with GCC-15 |
trixie, forky, sid, ftbfs, patch |
| 1103198 |
r-bioc-cner: FTBFS: ucsc/common.c:360:9: error: too many arguments to function 'free' |
forky, trixie, patch, ftbfs, sid |
|
|
| 1097764 |
r-bioc-grohmm: ftbfs with GCC-15 |
sid, ftbfs, trixie, forky |
| 1103227 |
r-bioc-grohmm: FTBFS: DecayAlgorithm.c:94:15: error: expected identifier or '(' before 'false' |
ftbfs, sid, trixie, forky |
|
|
| 1033853 |
r-bioc-megadepth: autopkgtest regression: different output |
bookworm-ignore |
|
|
| 1097765 |
r-bioc-rtracklayer: ftbfs with GCC-15 |
forky, trixie, sid, ftbfs |
| 1103200 |
r-bioc-rtracklayer: FTBFS: ucsc/common.c:249:9: error: too many arguments to function 'free' |
ftbfs, sid, forky, trixie |
|
|
| 1025045 |
r-bioc-structuralvariantannotation: Test failures in autopkgtest |
bookworm-ignore, upstream |
|
|
| 1103082 |
r-cran-epir: FTBFS in testing/i386: make: *** [debian/rules:4: binary] Error 25 |
ftbfs, sid, trixie |
|
|
| 1103228 |
r-cran-sdmtools: FTBFS: pointinpolygon.c:11:20: error: 'PI' undeclared here (not in a function) |
trixie, patch, ftbfs, sid |
|
|
| 1099926 |
src:r-cran-vegan: fails to migrate to testing for too long |
sid, trixie |
|
|
| 1102776 |
seaview: FTBFS: /usr/bin/ld: ././treerecs_draw.cxx:793:(.text+0x1eb): undefined reference to `Fl_SVG_Image::resize(int, int)' |
ftbfs, trixie, sid |
|
|
| 976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
sid, bookworm, trixie, bullseye, ftbfs |
| 1087093 |
spades: Python SyntaxWarning |
|
| 1098530 |
ariba: FTBFS: TestAssembly.test_assemble_with_spades fails |
ftbfs, sid, trixie |
| 1100877 |
src:spades: fails to migrate to testing for too long |
sid, trixie |
|
|
| 1097930 |
sra-sdk: ftbfs with GCC-15 |
forky, sid |
| 1103330 |
sra-sdk: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1084681 |
toil: removal of Python standard libraries in Python 3.13 |
fixed-upstream, patch |
| 1087116 |
toil: Python SyntaxWarning |
patch |
| 1100817 |
toil: FTBFS: AssertionError: None == None |
ftbfs, trixie, sid |
| 1101085 |
toil: FTBFS: toil.batchSystems.DeadlockException: Deadlock encountered: The workflow is service deadlocked - all 1 running jobs have been the same active services for at least 60 seconds |
trixie, ftbfs, sid |
|
