Debian Med Project
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Summary
Bugs of task bio
Total bugs: 314
Open bugs: 265
Fixed bugs: 49
Links to other tasks
Biology 265 (2349)
Biology development 129 (1084)
Phylogeny 10 (72)
Cloud 53 (642)
Covid-19 154 (1587)
Medical data 1 (1)
Dental 1 (3)
Epidemiology 13 (224)
Imaging 210 (1063)
Laboratory 1 (9)
Oncology 1 (3)
Pharmacology 1 (9)
Physics 28 (213)
Practice 6 (33)
Psychology 6 (46)
Research 0 (0)
Statistics 3 (7)
Tools 38 (243)
Typesetting 66 (529)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 1
serious 22 12
important 58 15
normal 38 18
minor 71 5
wishlist 19 6

Summary bugs page of task Biology

Immediately looking into bugs of the dependencies of this task is advised (2349)*

Open bugs in dependent packages

22 serious, 58 important, 38 normal, 71 minor, 19 wishlist
920282 abyss fails to build on hurd - googletest EXPECT_DEATH
1066334 acedb: FTBFS: acein.c:2045:15: error: implicit declaration of function ‘add_history’ [-Werror=implicit-function-declaration] ftbfs, help, sid, trixie
1067631 src:altree: autopkgtest timeouts on armel, armhf and ppc64el
1012893 anfo: ftbfs with GCC-12 help, bookworm, sid, ftbfs, trixie
1061888 anfo: NMU diff for 64-bit time_t transition patch
1035113 arden: please add autopkgtests (to add coverage for python3-numpy)
1036488 arden: please add autopkgtests (to add coverage for python3-matplotlib)
1043995 baitfisher: Fails to build source after successful build ftbfs, sid, trixie
1074835 bali-phy: ftbfs with GCC-14 sid, trixie
1040385 libball1.5-data: broken symlink: /usr/share/BALL-1.5/BALLView/html -> ../../doc/libball1.5-data/BALLView/html
1060741 ball: Please port from sip4 to sip6 help
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' upstream, ftbfs
870060 bcftools FTBFS on big endian: 107 tests failed ftbfs, upstream
1043686 beads: Fails to build source after successful build ftbfs, sid, trixie
1032034 beagle: broken package on non arm64/amd64 architectures wontfix
1043854 beagle: Fails to build source after successful build ftbfs, sid, trixie
1025424 beast-mcmc: please enable autopkgtest help
1043640 beast-mcmc: Fails to build source after successful build ftbfs, sid, trixie
1025830 beauti2 fails to start help
1058469 bioxtasraw: please (temporarily) drop python3-numba dependencies
1035121 bitseq: please add autopkgtests (to add coverage for python3-numpy)
1067374 blasr: FTBFS: ./obj-x86_64-linux-gnu/../extrautils/StoreQualityByContextFromCmpH5.cpp:40: multiple definition of `main'; toAfg.p/utils_ToAfg.cpp.o:./obj-x86_64-linux-gnu/../utils/ToAfg.cpp:30: first defined here ftbfs, sid, trixie
1022772 btllib: fails to build on 32-bit archs wontfix
1032358 btllib: Depends on libsdsl-dev, breaking installability when not needed pending, patch
1058455 btllib: add build support for loongarch64 patch
1032036 chromhmm: broken package on non arm64/amd64 architectures wontfix
1043897 cif-tools: Fails to build source after successful build ftbfs, sid, trixie
1043837 concavity: Fails to build source after successful build ftbfs, sid, trixie
1035182 cutesv: please add autopkgtests (to add coverage for python3-numpy)
982869 datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors ftbfs, upstream
1044977 datamash: Fails to build source after successful build ftbfs, sid, trixie
1057439 datamash: "antimode" returns lowest, instead of least common, value
903886 dawg: Test suite fails upstream
1045047 dssp: Fails to build source after successful build ftbfs, sid, trixie
1044706 dwgsim: Fails to build source after successful build ftbfs, sid, trixie
1049717 dwgsim: Fails to build binary packages again after successful build ftbfs, sid, trixie
1074926 dwgsim: ftbfs with GCC-14 sid, trixie
862118 ea-utils: New upstream version available
682042 emboss-data: ships bulky taxonomy and gene ontology data
986043 emboss: uses media types that are not registered
1069098 emboss: all executables segfault on s390x bookworm, bullseye, sid, trixie
1069142 emboss: build time testsuite is failing silently
1044536 fasta3: Fails to build source after successful build ftbfs, sid, trixie
1074947 fastdnaml: ftbfs with GCC-14 sid, trixie
1044647 fermi-lite: Fails to build source after successful build ftbfs, sid, trixie
1049564 fermi-lite: Fails to build binary packages again after successful build ftbfs, sid, trixie
1067271 freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 fixed-upstream, ftbfs
1049797 freecontact: Fails to build binary packages again after successful build ftbfs, sid, trixie
1069552 freecontact: FTBFS on armel: make[1]: *** [Makefile:469: all-recursive] Error 1 ftbfs, sid, trixie
750139 gamgi: Conflicting return types of function gamgi_engine_iarray_push upstream
967366 gamgi: depends on deprecated GTK 2
1044244 gamgi: Fails to build source after successful build ftbfs, sid, trixie
1044308 garli: Fails to build source after successful build ftbfs, sid, trixie
715937 [Mayhem] Bug report on garlic: garlic crashes with exit status 139
749656 garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour
929564 gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit
983926 gatb-core: ftbfs with -march=x86-64-v2
1039206 gbrowse: ships sysv-init script without systemd unit
967379 gdpc: depends on deprecated GTK 2 wontfix
982103 gdpc: autopkgtest failure on s390x
1044789 gemma: Fails to build source after successful build ftbfs, sid, trixie
732691 Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button upstream
967392 ghemical: depends on deprecated GTK 2
967865 ghemical: depends on deprecated libglade2
996006 ghemical: Segmentation fault when starting
1066986 ghemical: FTBFS: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/libghemical.so: undefined reference to `sc::RenderedBallMolecule::RenderedBallMolecule(sc::Ref<sc::KeyVal> const&)' sid, ftbfs, trixie
1074994 ghmm: ftbfs with GCC-14 sid, trixie
1045023 grabix: Fails to build source after successful build ftbfs, sid, trixie
1075906 graphlan: fails tests with matplotlib 3.8
644397 Provide runtime detection for CPU SIMD capabilities upstream
983942 gromacs: ftbfs with -march=x86-64-v3
1044305 gwama: Fails to build source after successful build ftbfs, sid, trixie
1053499 hilive: flaky autopkgtest on several archs: segfault upstream
958244 Use system libinih-dev
986193 hinge: no autopkgtest available yet newcomer
1035178 hinge: please add autopkgtests (to add coverage for python3-numpy)
1036500 hinge: please add autopkgtests (to add coverage for python3-matplotlib)
1048028 hisat2: Fails to build source after successful build ftbfs, sid, trixie
1032975 igdiscover -- Broken, unusable package due to incomplete code in the binary package ftbfs
1045517 infernal: Fails to build source after successful build ftbfs, sid, trixie
1045547 ipig: Fails to build source after successful build ftbfs, sid, trixie
1021557 jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) upstream
875328 jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined wontfix, upstream
1045535 jellyfish1: Fails to build source after successful build ftbfs, sid, trixie
872418 jmol: Weblinks in Help do not work
1047324 kallisto: Fails to build source after successful build ftbfs, sid, trixie
1057131 kallisto: add support for loongarch64 in d/control patch, pending
1073482 kissplice: FTBFS: make[3]: *** [doc/CMakeFiles/doc.dir/build.make:78: doc/user_guide.pdf] Error 1 ftbfs, sid, trixie
1074658 kissplice: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j8 test ARGS\+=--verbose ARGS\+=-j8 returned exit code 2 ftbfs, sid, trixie
1009159 kmerresistance: Add autopkgtest newcomer
1048396 last-align: Fails to build source after successful build ftbfs, sid, trixie
1015505 libncl: ftbfs with LTO (link time optimization) enabled sid, trixie
1075191 libncl: ftbfs with GCC-14 sid, trixie
1075199 libpwiz: ftbfs with GCC-14 sid, trixie
1045341 librg-utils-perl: Fails to build source after successful build ftbfs, sid, trixie
1049488 librg-utils-perl: Fails to build binary packages again after successful build ftbfs, sid, trixie
1015525 libssw: ftbfs with LTO (link time optimization) enabled sid, trixie, experimental
1075207 libssw: ftbfs with GCC-14 sid, trixie
1073098 libvcflib: replace to-be-removed markdown build-dependency pending
1074044 libvcflib: Improve support for loongarch64 pending, patch
967603 ltrsift: depends on deprecated GTK 2 upstream, wontfix
1048669 ltrsift: Fails to build source after successful build ftbfs, sid, trixie
1075241 lucy: ftbfs with GCC-14 sid, trixie
1047978 lumpy-sv: Fails to build source after successful build ftbfs, sid, trixie
1048586 macsyfinder: Fails to build source after successful build ftbfs, sid, trixie
1075253 maq: ftbfs with GCC-14 sid, trixie
1075254 maqview: ftbfs with GCC-14 sid, trixie
1045227 massxpert: Fails to build source after successful build ftbfs, sid, trixie
1048833 melting: Fails to build source after successful build ftbfs, sid, trixie
1035175 metaphlan: please add autopkgtests (to add coverage for python3-numpy)
1035188 microbegps: please add autopkgtests (to add coverage for python3-numpy)
1075273 mindthegap: ftbfs with GCC-14 sid, trixie
1075276 minimac4: ftbfs with GCC-14 sid, trixie
1066525 mlv-smile: FTBFS: src/allocateurs.c:45:39: error: implicit declaration of function ‘getpagesize’ [-Werror=implicit-function-declaration] pending, trixie, ftbfs, sid
1075288 mosdepth: ftbfs with GCC-14 sid, trixie
1048555 mptp: Fails to build source after successful build ftbfs, sid, trixie
1045898 nanook: Fails to build source after successful build ftbfs, sid, trixie
1073450 ncbi-acc-download: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 ftbfs, sid, trixie
891197 Please switch to pcre2 sid, trixie
956850 ncbi-blast+: Please provide /usr/bin/legacy_blast.pl
984871 ncbi-blast+: Missing headers for shared libraries
1010110 ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' wontfix
1074316 ncbi-blast+: Please package version 2.13+ as needed by q2-feature-classifier
1075867 ncbi-blast+: FTBFS with MbedTLS 3.6 ftbfs
1048966 ncbi-igblast: Fails to build source after successful build ftbfs, sid, trixie
1068442 igblast: Package igblast does not contain binary for igblast
1066563 ncbi-seg: FTBFS: genwin.c:93:8: error: implicit declaration of function ‘blastdb’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
225651 ncbi-tools-x11: want Cn3D++
1075307 ncbi-tools6: ftbfs with GCC-14 sid, trixie
1049529 norsnet: Fails to build binary packages again after successful build ftbfs, sid, trixie
1025370 ntcard: ftbfs with nthash 2.3.0 ftbfs, upstream
1075324 ntcard: ftbfs with GCC-14 sid, trixie
1045354 nxtrim: Fails to build source after successful build ftbfs, sid, trixie
1047870 obitools: Fails to build source after successful build ftbfs, sid, trixie
1068052 openms: FTBFS on armel,armhf (error: ‘QOpenGLFunctions_2_0’ does not name a type) ftbfs
1075361 parasail: ftbfs with GCC-14 sid, trixie
1069488 parsinsert: FTBFS on armhf: make[1]: *** [debian/rules:30: override_dh_auto_test] Error 1 ftbfs, confirmed, trixie, sid
1075383 phast: ftbfs with GCC-14 sid, trixie
1071333 pigx-rnaseq: FTBFS: ERROR: could not find report for SALMON at transcript level trixie, ftbfs, sid
1047303 plast: Fails to build source after successful build ftbfs, sid, trixie
1048822 plink2: Fails to build source after successful build ftbfs, sid, trixie
1074546 FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) ftbfs
1075397 prime-phylo: ftbfs with GCC-14 sid, trixie
1045454 primer3: Fails to build source after successful build ftbfs, sid, trixie
1046067 proalign: Fails to build source after successful build ftbfs, sid, trixie
1042769 provean: incompatible with cd-hit >= 4.8.1-4 trixie, sid
1048520 psortb: Fails to build source after successful build ftbfs, sid, trixie
602610 Package freemol.mengine for full modeling capabilities
709306 pymol: Crashes when running within xrdp/vnc (no 3D support)
765794 Race condition when running scripts in "stdin" mode
783653 pymol: Segmentation fault immediately after loading pdb
1058479 python-cogent: please (temporarily) drop python3-numba dependencies wontfix
1036374 [INTL:es] Spanish translation of qcumber debconf template l10n, patch
1036506 qcumber: please add autopkgtests (to add coverage for python3-matplotlib)
1049117 qcumber: Fails to build source after successful build ftbfs, sid, trixie
1068856 [INTL:sv] Swedish strings for qcumber debconf l10n, patch
1076314 qiime hard-codes python 3.11 without depending on it sid, trixie
642084 qutemol: Cannot start the program
939033 qutemol: Uses GifQuantizeBuffer - stops working with newer giflib
1069509 r-cran-metamix: FTBFS on armhf: tests fail trixie, moreinfo, ftbfs, sid
1047092 rambo-k: Fails to build source after successful build ftbfs, sid, trixie
909766 Use Debian packaged spdlog instead of code copy of old version help, upstream
976588 rapmap: FTBFS on arm64 (when trying to build arch:all) trixie, bullseye, ftbfs, sid, bookworm
1075435 rapmap: ftbfs with GCC-14 sid, trixie
1045461 reapr: Fails to build source after successful build ftbfs, sid, trixie
1045897 reprof: Fails to build source after successful build ftbfs, sid, trixie
1049597 reprof: Fails to build binary packages again after successful build ftbfs, sid, trixie
1047005 roary: Fails to build source after successful build ftbfs, sid, trixie
1049576 roary: Fails to build binary packages again after successful build ftbfs, sid, trixie
1075486 salmon: ftbfs with GCC-14 sid, trixie
1015654 sambamba: ftbfs with LTO (link time optimization) enabled sid, trixie
1075487 savvy: ftbfs with GCC-14 sid, trixie
1074123 FTBFS agaings dlib in experimental ftbfs, patch
1075502 seqan-needle: ftbfs with GCC-14 sid, trixie
1075503 seqan-raptor: ftbfs with GCC-14 sid, trixie
917851 seqan2 2.4.0+dfsg-9: FTBFS, alignment problem ftbfs
1047218 seqan2: Fails to build source after successful build ftbfs, sid, trixie
1049489 seqprep: Fails to build binary packages again after successful build ftbfs, sid, trixie
967743 seqtools: depends on deprecated GTK 2
1047310 seqtools: Fails to build source after successful build ftbfs, sid, trixie
848589 snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated)
1075524 soapdenovo2: ftbfs with GCC-14 sid, trixie
1072346 sortmerna: please update autopkgtest newcomer
1075532 spoa: ftbfs with GCC-14 sid, trixie
1047125 sprai: Fails to build source after successful build ftbfs, sid, trixie
1075545 sumaclust: ftbfs with GCC-14 sid, trixie
1048111 surankco: Fails to build source after successful build ftbfs, sid, trixie
956848 t-coffee: should use "example" blastpgp.pl
1075571 thesias: ftbfs with GCC-14 sid, trixie
1073358 toil: FTBFS: ModuleNotFoundError: No module named 'boto' ftbfs, sid, trixie
1049071 tombo: Fails to build source after successful build ftbfs, sid, trixie
1045986 tortoize: Fails to build source after successful build ftbfs, sid, trixie
1049170 tree-puzzle: Fails to build source after successful build ftbfs, sid, trixie
1075584 tree-puzzle: ftbfs with GCC-14 sid, trixie
846481 src:treeviewx: Please remove statically linked code copy of libncl
981874 trinityrnaseq: flaky autopkgtest bookworm, sid, trixie, bullseye
1047488 twopaco: Fails to build source after successful build ftbfs, sid, trixie
980509 umap-learn: Binary package name should be python3-umap-learn pending
1058489 umap-learn: please (temporarily) drop python3-numba dependencies
1071816 umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> ftbfs
1048635 unicycler: Fails to build source after successful build ftbfs, sid, trixie
1075617 velvet: ftbfs with GCC-14 sid, trixie
976511 vg: FTBFS on arm64: configure: error: Could not find a version of the library! bullseye, trixie, ftbfs, bookworm, sid
987184 vg -- excessive variants built, and not tested
1013061 vg: ftbfs with GCC-12 bookworm, sid, trixie, ftbfs
1015699 vg: ftbfs with LTO (link time optimization) enabled sid, trixie
1043312 vg: Replace transitional bsdmainutils
1075638 wise: ftbfs with GCC-14 sid, trixie

Open bugs in suggested packages

1 grave, 12 serious, 15 important, 18 normal, 5 minor, 6 wishlist
928076 bcbio: Workflows not ready for non-developers to depend on.
1018312 bcbio: build-depends on python3-nose or uses it for autopkgtest
1030327 science-numericalcomputation: please stop recommending python3-theano as it is being removed
1032638 please drop transitional package science-electronics from src:debian-science
1055339 debian-science: please replace recommendation of src:dolfin by src:fenics-dolfinx
995966 epigrass: epirunner and epidash fail to run due to missing dash modules pending
998265 epigrass: autopkgtest regression: The 'panel' distribution was not found
1057989 epigrass: runtime dependency on cython sid, trixie
1058470 epigrass: please (temporarily) drop python3-numba dependencies
638753 libhdf5-serial-1.8.7: threadsafe memory leaks moreinfo
715959 [Mayhem] Bug report on hdf5-tools: gif2h5 crashes with exit status 139
716008 [Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139
716010 [Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139
716011 [Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139
716012 [Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139
740613 libhdf5-7: Please include support for compression with libaec
748587 Duplicate and conflicting definitions of variable FILENAME upstream
839784 libhdf5-dev: pkg-config file references ONLY the C library
915807 hdf5: CVE-2017-17507 security, upstream
958174 hdf5: please add the hdf5plugins
968559 libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing moreinfo
1023446 libhdf5-openmpi-dev: h5pcc configured as static build
1023820 hdf5: Dependencies not tight enough
1031726 hdf5: CVE-2022-26061 CVE-2022-25972 CVE-2022-25942 upstream, security
1034807 hdf5: CVE-2018-11205 upstream, security
1034838 hdf5: CVE-2019-8396 CVE-2019-8398 security
1040862 hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin
1052250 pkg-config file incorrect for static linking
1063856 hdf5: new upstream release
1067758 Please provide a nojava build profile
1067789 hdf5: diff for NMU version 1.10.10+repack-3.2 patch, pending
1067950 hdf5: diff for NMU version 1.10.10+repack-3.3 patch, pending
1075063 hdf5: ftbfs with GCC-14 sid, trixie
1075071 hts-nim-tools: ftbfs with GCC-14 sid, trixie
1063953 intake: autopkgtest regression with pytest 8
1064752 intake: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 ftbfs, sid, trixie
1067969 python3-intake: Please replace python3-appdirs dependency with platformdirs sid, trixie
1067957 FTBFS: error: call of overloaded ‘__gmp_expr(__time64_t&)’ is ambiguous trixie, ftbfs, sid
1047039 pyrle: Fails to build source after successful build ftbfs, sid, trixie
1075928 python-anndata: tests fail with scipy 1.13
1058482 python-loompy: please (temporarily) drop python3-numba dependencies
1046648 python-ncls: Fails to build source after successful build ftbfs, sid, trixie
1035277 python-seqcluster: please add autopkgtests (to add coverage for python3-numpy)
1076318 q2-alignment hard-codes python 3.11 without depending on it sid, trixie
1076315 q2-demux hard-codes python 3.11 without depending on it sid, trixie
1071882 q2-feature-classifier: FTBFS: unsatisfiable build-dependencies ftbfs
1076317 q2-phylogeny hard-codes python 3.11 without depending on it sid, trixie
1065333 q2-types: test data heavily outweighs actual code
1076316 q2-types hard-codes python 3.11 without depending on it sid, trixie
1076080 q2cli: FTBFS in sid (python3.12)
1036681 relion-cuda: FTBFS with CUDA 12: nvcc fatal : Value 'sm_35' is not defined for option 'gpu-architecture' sid, ftbfs, trixie
1040128 relion-cuda: FTBFS with cub 2.0.1: error: function "cub::Debug" has already been defined ftbfs, sid, trixie
1049268 resfinder-db: Fails to build source after successful build ftbfs, sid, trixie
986200 sift: Please provide autopkgtest newcomer
987606 sift: does not autobuild on buildds
1066998 sift: FTBFS with -Werror=implicit-function-declaration ftbfs, sid, trixie
1074158 FTBFS against dlib in experimental ftbfs, patch

Done bugs

1073090 alter-sequence-alignment: replace to-be-removed markdown build-dependency
1073435 augur: FTBFS: unsatisfiable build-dependency: libzstd1 (< 1.5.6~) but 1.5.6+dfsg-1 is to be installed ftbfs, sid, trixie
1075990 bamtools corrupts output data on bigendian architectures patch, upstream
1069737 bioxtasraw: please drop dependency on obsolete python3-mock
1074270 cluster3: needs rebuild for Python 3.12 as default ftbfs, sid, trixie
1073387 conda-package-handling: FTBFS: unsatisfiable build-dependency: libzstd1 (< 1.5.6~) but 1.5.6+dfsg-1 is to be installed ftbfs, sid, trixie
1074900 daligner: ftbfs with GCC-14 sid, trixie
1074909 dialign: ftbfs with GCC-14 trixie, sid
1074930 ecopcr: ftbfs with GCC-14 trixie, sid
1074593 emperor: Move from jsdoc-toolkit to node-jsdoc2
1033703 gffread: autopkgtest regression: test dependency not in testing bookworm-ignore
1073921 gffread: Revert the 0.12.7-4 tests workaround
1073355 ghmm: FTBFS: xmlwriter.c:1105:5: error: implicit declaration of function ‘xmlSubstituteEntitiesDefault’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1072628 graphlan: autopkgtest regression in testing sid, trixie
1070861 hdf5: CVE-2024-33877 CVE-2024-33876 CVE-2024-33875 CVE-2024-33874 CVE-2024-33873 CVE-2024-32624 CVE-2024-32623 CVE-2024-32622 CVE-2024-32621 CVE-2024-32620 CVE-2024-32619 CVE-2024-32618 CVE-2024-32617 CVE-2024-32616 CVE-2024-32615 CVE-2024-32614 CVE-2024-32613 CVE-2024-32612 CVE-2024-32611 CVE-2024-32610 CVE-2024-32609 CVE-2024-32608 CVE-2024-32607 CVE-2024-32606 CVE-2024-32605 CVE-2024-29166 CVE-2024-29165 CVE-2024-29164 CVE-2024-29163 CVE-2024-29162 CVE-2024-29161 CVE-2024-29160 CVE-2024-29159 CVE-2024-29158 CVE-2024-29157 security, upstream
1074739 hisat2: FTBFS: make[1]: *** [debian/rules:39: override_dh_auto_build] Error 1 trixie, ftbfs, sid, experimental
1074521 lamassemble: autopkgtest failure with Python 3.12
1063589 multiqc fails autopkg tests with Python 3.12 trixie, sid, ftbfs
1065908 multiqc: Please drop dependencies on python3-distutils
1070809 src:multiqc: fails to migrate to testing for too long: depends on package that doesn't migrate sid, trixie
1073586 obitools: extractreads fails to run patch
1075359 paml: ftbfs with GCC-14 sid, trixie
964082 parsinsert fails it's tests when built with -O2 bookworm, trixie, sid, bullseye
1074677 porechop: FTBFS: ModuleNotFoundError: No module named 'distutils' ftbfs, sid, trixie
1074222 pycorrfit FTBFS with Python 3.12 as default sid, trixie, ftbfs
1030885 python-cogent: FTBFS (some tests require more than one CPU) ftbfs, patch
1074562 python-cogent: binary-any FTBFS ftbfs
1075421 python-py2bit: ftbfs with GCC-14 trixie, sid
1054591 python3-pyflow: ${VERSION} not expanded in package metadata, causing PEP-440 validation failures
1065945 q2-emperor: Please drop dependencies on python3-distutils
1070988 src:q2-feature-table: fails to migrate to testing for too long: autopkgtest regression sid, trixie
1071883 q2-quality-control: FTBFS: unsatisfiable build-dependencies ftbfs
1065946 q2-sample-classifier: Please drop dependencies on python3-distutils
1066085 q2cli: please make the build reproducible patch
1068006 qiime: Please replace python3-appdirs dependency with platformdirs sid, trixie
1034852 r-bioc-annotationhub: autopkgtest regression: download failed bookworm-ignore
1071341 r-bioc-genefilter: FTBFS: nd.c:75:21: error: format not a string literal and no format arguments ftbfs
1071343 r-bioc-hilbertvis: FTBFS: make_wiggle_vector.c:16:17: error: format not a string literal and no format arguments ftbfs
1033853 r-bioc-megadepth: autopkgtest regression: different output bookworm-ignore
1070842 r-bioc-mutationalpatterns: autopkgtest regression with r-base 4.4.0
1071347 r-bioc-rtracklayer: FTBFS: handlers.c:10:11: error: format not a string literal and no format arguments ftbfs
1025045 r-bioc-structuralvariantannotation: Test failures in autopkgtest bookworm-ignore, upstream
1073582 src:r-cran-vegan: fails to migrate to testing for too long: cause autopkgtest issues sid, trixie
976523 spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" sid, bookworm, trixie, bullseye, ftbfs
1040391 sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
1065961 sra-sdk: Please drop dependencies on python3-distutils ftbfs
1073105 ssake: replace to-be-removed markdown build-dependency trixie, sid
1073106 swarm-cluster: replace to-be-removed markdown build-dependency
1073230 varna: autopkgtest regression: errors and than hangs
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Tue, 16 Jul 2024 04:37:40 -0000