Summary
Bugs of task
bio
Total bugs:
415
Open bugs:
376
Fixed bugs:
39
Links to other tasks
Legend
Severity | Dependent | Suggested |
critical |
0 |
0 |
grave |
0 |
0 |
serious |
61 |
20 |
important |
90 |
29 |
normal |
59 |
20 |
minor |
54 |
7 |
wishlist |
29 |
7 |
|
Summary bugs page of task Biology
Immediately looking into bugs of the dependencies of this task is advised (4285)*
Open bugs in dependent packages
61 serious, 90 important, 59 normal, 54 minor, 29 wishlist
|
920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
|
1066334 |
acedb: FTBFS: acein.c:2045:15: error: implicit declaration of function âadd_historyâ [-Werror=implicit-function-declaration] |
forky, ftbfs, help, sid, trixie |
|
1067631 |
src:altree: autopkgtest timeouts on armel, armhf and ppc64el |
|
1096300 |
altree: ftbfs with GCC-15 |
forky, ftbfs, sid |
1102872 |
altree: add perl-xs-dev to Build-Depends |
|
|
1096305 |
ampliconnoise: ftbfs with GCC-15 |
forky, ftbfs, sid |
1107485 |
ampliconnoise FTCBFS: misses mpi flags |
patch |
|
1112710 |
assembly-stats: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1094842 |
augur: Please update to latest upstream 28.0.0, released 2025-01-30 |
|
|
1110595 |
autodock-vina ftbfs with boost1.88 |
forky, sid |
|
1110448 |
avogadro: FTBFS on arm64 with GCC-15 due to GCS warning |
|
|
1112715 |
axe-demultiplexer: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1040385 |
libball1.5-data: broken symlink: /usr/share/BALL-1.5/BALLView/html -> ../../doc/libball1.5-data/BALLView/html |
|
1112717 |
ball: FTBFS with CMake 4 |
forky, ftbfs, sid |
1114056 |
ball: FTBFS: /<<PKGBUILDDIR>>/include/BALL/DATATYPE/contourSurface.h:305:80: error: 'const class BALL::TContourSurface<T>' has no member named 'data_' [-Wtemplate-body] |
forky, ftbfs, sid |
|
1112718 |
bamtools: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1112722 |
bcalm: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1043686 |
beads: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
1112754 |
beads: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1032034 |
beagle: broken package on non arm64/amd64 architectures |
wontfix |
|
1025424 |
beast-mcmc: please enable autopkgtest |
help |
1107598 |
beast-mcmc: please honor CFLAGS |
|
|
1025830 |
beauti2 fails to start |
help |
|
1104751 |
bedtools: FTBFS with GNUMAKEFLAGS=--shuffle=random |
patch |
1105730 |
bedtools: FTBFS with make --shuffle=random: src/utils/version/version.cpp:2:10: fatal error: version_git.h: No such file or directory |
forky, ftbfs, sid, trixie |
|
1110628 |
berkeley-express ftbfs with boost1.88 |
forky, sid |
1112724 |
berkeley-express: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1096367 |
bifrost: ftbfs with GCC-15 |
forky, ftbfs, sid |
1112726 |
bifrost: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1085363 |
bioxtasraw: Python SyntaxWarning |
|
|
1112732 |
bppphyview: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1112733 |
bppsuite: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1104172 |
btlib - breaks autopkgtests for nthash. |
|
|
1104777 |
bustools: do not hardcode CFLAGS and CXXFLAGS |
patch |
1112739 |
bustools: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1112764 |
cassiopee: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1032036 |
chromhmm: broken package on non arm64/amd64 architectures |
wontfix |
|
1112778 |
cif-tools: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1112565 |
clonalorigin: recommends libxml-parserl-perl which is not in unstable |
|
|
1096450 |
coils: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1072286 |
coot: add autopkgtest for coot executable |
patch |
|
1105260 |
crac: FTBFS with make --shuffle=reverse: dh_auto_test: error: make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 returned exit code 2 |
forky, ftbfs, sid, trixie |
|
1035182 |
cutesv: please add autopkgtests (to add coverage for python3-numpy) |
|
|
982869 |
datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors |
ftbfs, upstream |
1044977 |
datamash: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
903886 |
dawg: Test suite fails |
upstream |
1112828 |
dawg: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1110577 |
delly ftbfs with boost1.88 |
forky, sid |
|
1112842 |
diamond-aligner: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1112847 |
discosnp: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1114089 |
disulfinder: FTBFS: /usr/include/f2c.h:135:9: error: reference to 'complex' is ambiguous |
forky, ftbfs, sid |
|
1110576 |
dnaclust ftbfs with boost1.88 |
forky, sid |
|
1112859 |
dssp: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1096554 |
dwgsim: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
862118 |
ea-utils: New upstream version available |
|
|
682042 |
emboss-data: ships bulky taxonomy and gene ontology data |
|
986043 |
emboss: uses media types that are not registered |
|
1069098 |
emboss: all executables segfault on s390x |
bookworm, bullseye, forky, sid, trixie |
1069142 |
emboss: build time testsuite is failing silently |
|
1106974 |
emboss: add libcrypt-dev to Build-Depends |
|
|
1088492 |
python3-emperor-doc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
1105316 |
epcr: FTBFS with make --shuffle=reverse: fahash_lookup.cpp:30:10: fatal error: epcr/fahash.hpp: No such file or directory |
forky, ftbfs, sid, trixie |
|
1087184 |
examl: fails to run with tight cores count |
|
1105362 |
examl: FTBFS with make --shuffle=reverse: dh_install: error: missing files, aborting |
forky, ftbfs, sid, trixie |
|
1096607 |
fasta3: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1096612 |
fastlink: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1113830 |
submit@bugs.debian.org |
|
1113845 |
fastqtl: recommends r-cran-qvalue which is not in unstable |
|
|
1112919 |
flexbar: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1096651 |
freecontact: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
715937 |
[Mayhem] Bug report on garlic: garlic crashes with exit status 139 |
|
749656 |
garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour |
|
|
929564 |
gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit |
|
983926 |
gatb-core: ftbfs with -march=x86-64-v2 |
|
|
1039206 |
gbrowse: ships sysv-init script without systemd unit |
|
1102804 |
gbrowse: add perl-xs-dev to Build-Depends |
|
|
967379 |
gdpc: depends on deprecated GTK 2 |
wontfix |
982103 |
gdpc: autopkgtest failure on s390x |
|
|
1107684 |
genometester FTCBFS: C vs C++ confusion |
patch, upstream |
|
1105366 |
genomethreader: FTBFS with make --shuffle=reverse: src/libgenomethreader/gthversionfunc.c:3:10: fatal error: gth_config.h: No such file or directory |
forky, ftbfs, sid, trixie |
|
1105339 |
genometools: FTBFS with make --shuffle=reverse: ./obj/gt_config.h:1: error: unterminated #ifndef |
forky, ftbfs, sid, trixie |
1114122 |
genometools: FTBFS: src/extended/md5set.c:32:3: error: conflicting types for 'md5_t'; have 'struct <anonymous>' |
forky, ftbfs, sid |
|
1092841 |
genomicsdb: FTBFS with fmtlib 11.1 |
ftbfs |
|
732691 |
Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button |
upstream |
1107615 |
gentle FTCBFS: uses mysql_config and the build architecture pkg-config |
patch, upstream |
|
1107772 |
gmap inlining failed in call to âalways_inlineâ â_mm_alignr_epi8â: target specific option mismatch |
confirmed, ftbfs |
|
644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
983942 |
gromacs: ftbfs with -march=x86-64-v3 |
|
|
1112991 |
hhsuite: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1053499 |
hilive: flaky autopkgtest on several archs: segfault |
upstream |
1113687 |
Should hilive be removed from unstable? |
|
|
958244 |
Use system libinih-dev |
|
986193 |
hinge: no autopkgtest available yet |
newcomer |
1035178 |
hinge: please add autopkgtests (to add coverage for python3-numpy) |
|
1036500 |
hinge: please add autopkgtests (to add coverage for python3-matplotlib) |
|
1112992 |
hinge: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1048028 |
hisat2: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
1076524 |
hisat2: autopkgtest uses absurd amount of memory on s390x |
|
|
1103312 |
hmmer: FTBFS with the nocheck build profile |
forky, ftbfs, sid, trixie |
|
1096850 |
iqtree: ftbfs with GCC-15 |
forky, ftbfs, sid |
1113054 |
iqtree: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1021557 |
jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) |
upstream |
1102846 |
jellyfish: add perl-xs-dev to Build-Depends |
|
1105388 |
jellyfish: FTBFS with make --shuffle=reverse: jellyfish/fastq2sam.cc:12:10: fatal error: jellyfish/fastq2sam_cmdline.hpp: No such file or directory |
forky, ftbfs, sid, trixie |
|
875328 |
jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined |
upstream, wontfix |
|
1095078 |
jmodeltest: reduce the permissions on /var/log/jmodeltest |
|
1099239 |
jmodeltest: FTBFS: rc/main/java/es/uvigo/darwin/jmodeltest/io/HtmlReporter.java:38: error: cannot find symbol |
forky, ftbfs, sid, trixie |
|
872418 |
jmol: Weblinks in Help do not work |
|
|
1047324 |
kallisto: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
1113067 |
kallisto: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1103315 |
kineticstools: FTBFS with the nocheck build profile |
forky, ftbfs, sid, trixie |
|
1081273 |
meryl: Meryl should be packaged separately from new upstream location |
|
1105422 |
kmer: FTBFS with make --shuffle=reverse: make[2]: *** No rule to make target '/build/reproducible-path/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a', needed by 'atac-driver/chimera/happy-clones-span-clumps'. Stop. |
forky, ftbfs, sid, trixie |
|
1009159 |
kmerresistance: Add autopkgtest |
newcomer |
|
1113092 |
lambda-align: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1113093 |
lambda-align2: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1048396 |
last-align: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1097151 |
lastz: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1110624 |
libpwiz ftbfs with boost 1.88 |
forky, sid |
|
967603 |
ltrsift: depends on deprecated GTK 2 |
upstream, wontfix |
1048669 |
ltrsift: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
1105470 |
ltrsift: FTBFS with make --shuffle=reverse: Fatal error: can't create obj/src/ltrsift_encode.o: No such file or directory |
forky, ftbfs, sid, trixie |
|
1047978 |
lumpy-sv: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1113261 |
macromoleculebuilder: FTBFS with CMake 4 |
forky, ftbfs, sid |
1114196 |
macromoleculebuilder: FTBFS: dh_auto_configure: err [too-long-redacted] on -O0" .. returned exit code 1 |
forky, ftbfs, sid |
|
1113263 |
maffilter: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1113267 |
mapsembler2: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1045227 |
massxpert: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
1084296 |
massxpert: FTBFS: rror: static assertion failed: No Q_OBJECT in the class passed to QObject::findChildren |
forky, ftbfs, sid, trixie |
|
1113273 |
megadepth: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1088028 |
megahit: consider unembedding parallel-hashmap |
|
1113276 |
megahit: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1048833 |
melting: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1113279 |
metabat: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1113280 |
metaeuk: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1035188 |
microbegps: please add autopkgtests (to add coverage for python3-numpy) |
|
|
1113288 |
mindthegap: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1113290 |
minia: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1099518 |
minimap2: error: type mismatch in conditional expression on loong64 |
patch |
|
1105480 |
mlv-smile: FTBFS with make --shuffle=reverse: ld: cannot find grep+/obj/global_fonctions.o: No such file or directory |
forky, ftbfs, sid, trixie |
|
1113291 |
mmseqs2: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1112654 |
mosdepth: FTBFS: /usr/share/nimble/regex/regex.nim(859, 18) Error: Exception can raise an unlisted exception: Exception |
forky, ftbfs, sid |
|
1105502 |
mptp: FTBFS with make --shuffle=reverse: lex_rtree.l:22:10: fatal error: parse_rtree.h: No such file or directory |
forky, ftbfs, sid, trixie |
|
1088472 |
multiqc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
1110615 |
murasaki ftbfs with boost 1.88 |
forky, sid |
|
1105460 |
muscle: FTBFS with make --shuffle=reverse: Fatal error: can't create Linux/usage.o: No such file or directory |
forky, ftbfs, sid, trixie |
|
1097430 |
nanopolish: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1103286 |
Autopkgtest not working in s390x architecture |
|
|
956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
984871 |
ncbi-blast+: Missing headers for shared libraries |
|
1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
1077777 |
ncbi-blast+: makeblastdb yields broken DBs on s390x (BE generally?) |
upstream |
1080479 |
ncbi-blast+: failure to create blastdb v5 on riscv64 |
|
|
1048966 |
ncbi-igblast: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
1097435 |
ncbi-igblast: ftbfs with GCC-15 |
forky, ftbfs, sid |
1113797 |
ncbi-igblast FTCBFS: does not pass --host to configure |
patch |
|
1097436 |
ncbi-seg: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
225651 |
ncbi-tools-x11: want Cn3D++ |
|
|
1113324 |
ngmlr: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1049529 |
norsnet: Fails to build binary packages again after successful build |
forky, ftbfs, sid, trixie |
|
1025370 |
ntcard: ftbfs with nthash 2.3.0 |
ftbfs, upstream |
|
1047870 |
obitools: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1068052 |
openms: FTBFS on armel,armhf (error: âQOpenGLFunctions_2_0â does not name a type) |
ftbfs |
1112634 |
openms FTBFS: error from pdflatex |
ftbfs |
1113360 |
openms: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1069488 |
parsinsert: FTBFS on armhf: make[1]: *** [debian/rules:30: override_dh_auto_test] Error 1 |
confirmed, forky, ftbfs, sid, trixie |
|
1091721 |
pbsuite: autopkgtest regression in testing |
confirmed |
|
1103318 |
pftools: FTBFS with the nocheck build profile |
forky, ftbfs, sid, trixie |
|
1097575 |
phast: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1106652 |
phyml FTCBFS: cross compilation support reverted |
patch, upstream |
|
1113404 |
physamp: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1114262 |
pigx-rnaseq: FTBFS: dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 |
forky, ftbfs, sid |
|
1113407 |
pizzly: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1047303 |
plast: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
1097619 |
plast: ftbfs with GCC-15 |
forky, ftbfs, sid |
1113412 |
plast: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1107047 |
plink: add libcrypt-dev to Build-Depends |
|
|
1113418 |
populations: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1074546 |
FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) |
ftbfs |
1093109 |
pplacer: FTBFS with OCaml 5.3.0 (error in C stubs) |
ftbfs |
|
1078584 |
prime-phylo fails to build with mpi-defaults 1.17 on armhf |
wontfix |
1097647 |
prime-phylo: ftbfs with GCC-15 |
forky, ftbfs, sid |
1113421 |
prime-phylo: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1097649 |
primer3: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1091575 |
probabel: FTBFS on i386: dh_auto_test: error: make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 returned exit code 2 |
forky, ftbfs, sid, trixie |
|
1105698 |
proteinortho: FTBFS with make --shuffle=reverse: rm: cannot remove 'remove.*': No such file or directory |
forky, ftbfs, sid, trixie |
|
1048520 |
psortb: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
1102847 |
psortb: add perl-xs-dev to Build-Depends |
|
|
709306 |
pymol: Crashes when running within xrdp/vnc (no 3D support) |
|
765794 |
Race condition when running scripts in "stdin" mode |
|
783653 |
pymol: Segmentation fault immediately after loading pdb |
|
|
1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
1090269 |
python-cogent: FTBFS: E ImportError: Numba could not be imported. |
ftbfs |
|
1085900 |
python-csb: Python SyntaxWarning |
pending |
|
1103326 |
qcat: FTBFS with the nocheck build profile |
forky, ftbfs, sid, trixie |
|
1036374 |
[INTL:es] Spanish translation of qcumber debconf template |
l10n, patch |
1036506 |
qcumber: please add autopkgtests (to add coverage for python3-matplotlib) |
|
1049117 |
qcumber: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
1068856 |
[INTL:sv] Swedish strings for qcumber debconf |
l10n, patch |
1088515 |
qcumber: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
1103459 |
qcumber: [INTL:pt_BR] Brazilian Portuguese debconf templates translation |
l10n, patch |
|
1076314 |
qiime hard-codes python 3.11 without depending on it |
forky, pending, sid, trixie |
1084668 |
qiime: removal of Python standard libraries in Python 3.13 |
fixed-upstream, pending |
|
642084 |
qutemol: Cannot start the program |
|
939033 |
qutemol: Uses GifQuantizeBuffer - stops working with newer giflib |
|
|
1085689 |
r-bioc-mofa: Python SyntaxWarning |
|
|
1103201 |
r-cran-genabel: FTBFS: fexact.c:181:37: error: implicit declaration of function 'Calloc' |
forky, ftbfs, sid, trixie |
|
1081161 |
r-cran-sdmtools: removed from CRAN repository |
|
|
1084108 |
r-cran-spp: removed from CRAN repository |
|
|
1081175 |
r-cran-tcr: removed from CRAN repository |
|
|
1097767 |
racon: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1047092 |
rambo-k: Fails to build source after successful build |
forky, ftbfs, pending, sid, trixie |
|
909766 |
Use Debian packaged spdlog instead of code copy of old version |
help, upstream |
976588 |
rapmap: FTBFS on arm64 (when trying to build arch:all) |
bookworm, bullseye, forky, ftbfs, sid, trixie |
1097770 |
rapmap: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1097771 |
rasmol: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1097773 |
raster3d: ftbfs with GCC-15 |
forky, ftbfs, sid |
1105671 |
raster3d: FTBFS with make --shuffle=reverse: Fatal Error: Cannot open module file âlists.modâ for reading at (1): No such file or directory |
forky, ftbfs, sid, trixie |
|
1105678 |
raxml: FTBFS with make --shuffle=reverse: ld: cannot find multiple.o: No such file or directory |
forky, ftbfs, sid, trixie |
|
1099282 |
rdp-classifier: FTBFS: src/edu/msu/cme/rdp/classifier/train/validation/distance/BoxPlotUtils.java:28: error: cannot find symbol |
confirmed, forky, ftbfs, help, sid, trixie |
1108589 |
rdp-classifier: FTBFS with default Java 25 |
ftbfs |
|
1097779 |
readseq: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1097784 |
relion: ftbfs with GCC-15 |
forky, ftbfs, sid |
1113466 |
relion: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1097803 |
roguenarok: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1105603 |
saint: FTBFS with make --shuffle=reverse: mv: target '/build/reproducible-path/saint-2.5.0+dfsg/build': No such file or directory |
forky, ftbfs, sid, trixie |
|
1088027 |
salmon: consider unembedding parallel-hashmap |
|
1097838 |
salmon: ftbfs with GCC-15 |
forky, ftbfs, sid |
1103327 |
salmon: FTBFS with the nocheck build profile |
forky, ftbfs, sid, trixie |
|
1015654 |
sambamba: ftbfs with LTO (link time optimization) enabled |
forky, sid, trixie |
1095434 |
sambamba: rare segmentation fault makes nanosv autopkgtest flaky |
|
|
1113483 |
savvy: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1113489 |
scrappie: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1111716 |
seqan-raptor: FTBFS pdflatex refman |
ftbfs |
1114369 |
seqan-raptor: FTBFS: dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 |
forky, ftbfs, sid |
|
917851 |
seqan2 2.4.0+dfsg-9: FTBFS, alignment problem |
ftbfs |
1047218 |
seqan2: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1049489 |
seqprep: Fails to build binary packages again after successful build |
forky, ftbfs, sid, trixie |
|
967743 |
seqtools: depends on deprecated GTK 2 |
|
1047310 |
seqtools: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1110602 |
shasta ftbfs with boost 1.88 |
forky, sid |
|
1113499 |
sibelia: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1097885 |
sim4: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1113504 |
simka: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1112688 |
skesa FTCBFS: uses variable CC for the C++ compiler |
patch, upstream |
|
848589 |
snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated) |
|
|
1097906 |
soapaligner: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1097907 |
soapdenovo: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1097909 |
soapdenovo2: ftbfs with GCC-15 |
forky, ftbfs, sid |
1105578 |
soapdenovo2: FTBFS with make --shuffle=reverse: ld: cannot find sparsePregraph/*.o: No such file or directory |
forky, ftbfs, sid, trixie |
|
1072346 |
sortmerna: please update autopkgtest |
newcomer |
1097910 |
sortmerna: ftbfs with GCC-15 |
forky, ftbfs, sid |
1113530 |
sortmerna: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1114393 |
sourmash: FTBFS: error: failed to select a version for the requirement `typed-builder = "^0.20"` |
forky, ftbfs, sid |
|
1086015 |
build for all supported python3 |
|
1088026 |
spades: consider unembedding parallel-hashmap |
|
1097913 |
spades: ftbfs with GCC-15 |
forky, ftbfs, sid |
1113531 |
spades: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1112687 |
spaln FTCBFS: uses -l flags in Makefile dependencies |
patch, upstream |
|
1097922 |
spoa: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1097934 |
staden: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1048111 |
surankco: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1097956 |
sweed: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
956848 |
t-coffee: should use "example" blastpgp.pl |
|
|
1113569 |
terraphast: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1105687 |
theseus: FTBFS with make --shuffle=reverse: ld: cannot find -ltheseus: No such file or directory |
forky, ftbfs, sid, trixie |
|
1097993 |
thesias: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1108056 |
toil: FTBFS: Some tests fail on single-cpu systems |
forky, ftbfs, help, sid, trixie |
|
1098011 |
tracetuner: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1113584 |
transrate-tools: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1106704 |
tree-puzzle FTCBFS: uses mpicc |
patch, upstream |
1108273 |
tree-puzzle: please make the build reproducible |
patch |
|
846481 |
src:treeviewx: Please remove statically linked code copy of libncl |
|
|
981874 |
trinityrnaseq: flaky autopkgtest |
bookworm, bullseye, forky, sid, trixie |
1113587 |
trinityrnaseq: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1113589 |
tvc: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1047488 |
twopaco: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1105670 |
uc-echo: FTBFS with make --shuffle=reverse: ././NeighborSet.hpp:200:(.text.startup+0x801): undefined reference to `NeighborSetLoader::CacheSize' |
forky, ftbfs, sid, trixie |
|
980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
|
1071816 |
umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> |
ftbfs |
1112612 |
Should umap-learn be removed from unstable? |
wontfix |
|
1089115 |
umis: tracebacks normally fatal during autopkgtest runs |
upstream |
|
1114433 |
vcfanno: FTBFS: dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 |
forky, ftbfs, sid |
|
1105569 |
velvet: FTBFS with make --shuffle=reverse: Fatal error: can't create obj/autoOpen.o: No such file or directory |
forky, ftbfs, sid, trixie |
|
976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, forky, ftbfs, sid, trixie |
987184 |
vg -- excessive variants built, and not tested |
|
1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
forky, sid, trixie |
1089275 |
vg: FTBFS with make 4.4.1 |
forky, ftbfs, sid, trixie |
1113618 |
vg: FTBFS with CMake 4 |
forky, ftbfs, sid |
|
1105602 |
vmatch: FTBFS with make --shuffle=reverse: Fatal error: can't create ../lib/libfiles/kurtz-basic/verbosealpha.dbg.o: No such file or directory |
forky, ftbfs, sid, trixie |
|
1105561 |
yaha: FTBFS with make --shuffle=reverse: src/Math.c:343:1: fatal error: opening dependency file obj/Math.d: No such file or directory |
forky, ftbfs, sid, trixie |
Open bugs in suggested packages
20 serious, 29 important, 20 normal, 7 minor, 7 wishlist
|
1089541 |
override_dh_auto_build Error |
|
1100471 |
[INTL:es] Spanish translation of arb debconf template |
l10n, patch |
1102185 |
arb: Update/add debconf template translation [INTL:ca] |
l10n, patch |
1102816 |
arb: add perl-xs-dev to Build-Depends |
|
1114476 |
arb: FTBFS: CAP2.c:317:14: error: too many arguments to function 'ckopen'; expected 0, have 2 |
forky, ftbfs, sid |
|
928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
|
1114069 |
blimps: FTBFS: blksort.c:228:19: error: too many arguments to function 'read_config'; expected 0, have 3 |
forky, ftbfs, sid |
|
1085412 |
catfishq: Python SyntaxWarning |
|
|
1110578 |
cufflinks ftbfs with boost1.88 |
forky, sid |
1114084 |
cufflinks: FTBFS: locfit/adap.c:32:3: error: too many arguments to function 'wdiag'; expected 0, have 6 |
forky, ftbfs, sid |
|
1030327 |
science-numericalcomputation: please stop recommending python3-theano as it is being removed |
|
1032638 |
please drop transitional package science-electronics from src:debian-science |
|
1055339 |
debian-science: please replace recommendation of src:dolfin by src:fenics-dolfinx |
|
|
1081508 |
getdata: homepage defunct |
|
|
638753 |
libhdf5-serial-1.8.7: threadsafe memory leaks |
moreinfo |
716008 |
[Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139 |
|
716010 |
[Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139 |
|
716011 |
[Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139 |
|
716012 |
[Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139 |
|
839784 |
libhdf5-dev: pkg-config file references ONLY the C library |
|
968559 |
libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing |
moreinfo |
1023446 |
libhdf5-openmpi-dev: h5pcc configured as static build |
wontfix |
1040862 |
hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin |
moreinfo |
1052250 |
pkg-config file incorrect for static linking |
|
1100440 |
hdf5: CVE-2025-2153 |
security, upstream |
1103531 |
hdf5: CVE-2025-2926 |
security, upstream |
1103532 |
hdf5: CVE-2025-2925 |
security, upstream |
1103533 |
hdf5: CVE-2025-2924 |
security, upstream |
1103534 |
hdf5: CVE-2025-2923 |
security, upstream |
1103536 |
hdf5: CVE-2025-2915 |
security, upstream |
1103537 |
hdf5: CVE-2025-2914 |
security, upstream |
1103538 |
hdf5: CVE-2025-2913 |
security, upstream |
1103539 |
hdf5: CVE-2025-2912 |
security, upstream |
1103540 |
hdf5: CVE-2025-2310 |
security, upstream |
1103541 |
hdf5: CVE-2025-2309 |
security, upstream |
1103542 |
hdf5: CVE-2025-2308 |
security, upstream |
1105370 |
hdf5: FTBFS with make --shuffle=reverse: ln: failed to create symbolic link 'hdf5/serial/libhdf5.settings': File exists |
forky, ftbfs, sid, trixie |
1108155 |
hdf5: CVE-2025-6269 |
security, upstream |
1108156 |
hdf5: CVE-2025-6270 |
fixed-upstream, security, upstream |
1108409 |
hdf5: CVE-2025-6750 |
security, upstream |
1108480 |
hdf5: CVE-2025-6818 |
security, upstream |
1108481 |
hdf5: CVE-2025-6817 |
security, upstream |
1108482 |
hdf5: CVE-2025-6816 |
security, upstream |
1108884 |
hdf5: CVE-2025-7069 |
fixed-upstream, security, upstream |
1108885 |
hdf5: CVE-2025-7068 |
security, upstream |
1108886 |
hdf5: CVE-2025-7067 |
security, upstream |
|
1112653 |
hts-nim-tools: FTBFS: /usr/share/nimble/regex/regex.nim(859, 18) Error: Exception can raise an unlisted exception: Exception |
forky, ftbfs, sid |
|
1063953 |
intake: autopkgtest regression with pytest 8 |
|
1088416 |
intake: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
1094915 |
intake commatibility with zarr3 |
|
1112615 |
Should intake be removed from unstable? |
|
|
1067957 |
FTBFS: error: call of overloaded â__gmp_expr(__time64_t&)â is ambiguous |
forky, ftbfs, sid, trixie |
|
1108456 |
pybel: Drop python3-click (build) dependency |
forky, patch, sid, upstream |
|
1082368 |
FTBFS: TestIntegration.testIntegration: AssertionError: 1 != 0 |
confirmed, ftbfs |
|
1047039 |
pyrle: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1114293 |
python-anndata: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13 |
forky, ftbfs, sid |
|
1058482 |
python-loompy: please (temporarily) drop python3-numba dependencies |
|
|
1046648 |
python-ncls: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
|
1076318 |
q2-alignment hard-codes python 3.11 without depending on it |
forky, sid, trixie |
|
1104285 |
q2-cutadapt: Fix unstable/amd64 debci failure |
|
|
1076315 |
q2-demux hard-codes python 3.11 without depending on it |
forky, sid, trixie |
|
1071882 |
q2-feature-classifier: FTBFS: unsatisfiable build-dependencies |
ftbfs |
1114504 |
Should q2-feature-classifier be removed from unstable? |
|
|
1076317 |
q2-phylogeny hard-codes python 3.11 without depending on it |
|
|
1076914 |
q2-quality-control: FTBFS with the nocheck build profile |
ftbfs |
|
1065333 |
q2-types: test data heavily outweighs actual code |
|
1076316 |
q2-types hard-codes python 3.11 without depending on it |
forky, sid, trixie |
1104050 |
q2-types: Fix unstable/amd64 debci failure |
patch |
|
1076080 |
q2cli: FTBFS in sid (python3.12) |
ftbfs |
|
1088514 |
q2templates: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
1083247 |
r-bioc-org.hs.eg.db: homepage defunct, standardize |
|
|
1036681 |
relion-cuda: FTBFS with CUDA 12: nvcc fatal : Value 'sm_35' is not defined for option 'gpu-architecture' |
forky, ftbfs, sid, trixie |
1040128 |
relion-cuda: FTBFS with cub 2.0.1: error: function "cub::Debug" has already been defined |
forky, ftbfs, sid, trixie |
|
1049268 |
resfinder-db: Fails to build source after successful build |
forky, ftbfs, sid, trixie |
|
1114370 |
seq-gen: FTBFS: seq-gen.c:143:6: error: conflicting types for 'ReadParams'; have 'void(int, char **)' |
forky, ftbfs, sid |
|
986200 |
sift: Please provide autopkgtest |
newcomer |
987606 |
sift: does not autobuild on buildds |
|
1103329 |
sift: FTBFS with the nocheck build profile |
forky, ftbfs, sid, trixie |
1114377 |
sift: FTBFS: Matrix_Info.c:822:1: error: number of arguments doesn't match prototype |
forky, ftbfs, sid |
|
1114419 |
trnascan-se: FTBFS: src/gnuregex.c:1175:20: error: too many arguments to function 'at_begline_loc_p'; expected 0, have 3 |
forky, ftbfs, sid |
|
1102852 |
vienna-rna: add perl-xs-dev to Build-Depends |
|
1114434 |
vienna-rna: FTBFS: subopt.c:618:28: error: passing argument 2 of 'lst_kill' from incompatible pointer type [-Wincompatible-pointer-types] |
forky, ftbfs, sid |
Done bugs
|
1096281 |
aegean: ftbfs with GCC-15 |
forky, ftbfs, sid |
1109688 |
aegean: please enable build for loong64 |
patch |
|
1060741 |
ball: Please port from sip4 to sip6 |
confirmed, help, patch, sid, trixie, upstream |
|
1096362 |
beads: ftbfs with GCC-15 |
forky, sid |
|
1035121 |
bitseq: please add autopkgtests (to add coverage for python3-numpy) |
|
1111394 |
src:bitseq: fails to migrate to testing for too long |
forky, sid |
|
1110806 |
cif-tools: FTBFS: make[1]: *** [debian/rules:9: override_dh_auto_configure] Error 2 |
forky, ftbfs, sid |
|
1096504 |
datamash: ftbfs with GCC-15 |
forky, sid |
|
1110795 |
dssp: FTBFS: make: *** [debian/rules:15: binary] Error 2 |
forky, ftbfs, sid |
|
1096578 |
emboss: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
ftbfs |
|
750139 |
gamgi: Conflicting return types of function gamgi_engine_iarray_push |
upstream |
967366 |
gamgi: depends on deprecated GTK 2 |
|
1044244 |
gamgi: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1103009 |
genomicsdb: FTBFS in testing/arm64: tests failed |
ftbfs, sid, trixie, upstream |
|
1106611 |
ghmm ftbfs with libxml 2.14.x from experimental |
forky, ftbfs, patch, sid |
|
915807 |
hdf5: CVE-2017-17507 |
security, upstream |
1114023 |
hdf5 ftbfs in unstable |
forky, ftbfs, sid |
|
1111788 |
htslib: autopkgtest regression |
|
|
1064752 |
intake: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 |
forky, ftbfs, sid, trixie |
1067969 |
python3-intake: Please replace python3-appdirs dependency with platformdirs |
fixed-upstream, forky, patch, sid, trixie |
|
1104128 |
jalview: Update/add debconf template translation [INTL:ca] |
l10n, patch |
|
1082721 |
khmer: FTBFS: failing tests |
ftbfs |
1085660 |
khmer: Python SyntaxWarning |
|
|
1015525 |
libssw: ftbfs with LTO (link time optimization) enabled |
experimental, sid, trixie |
|
1097352 |
mafft: ftbfs with GCC-15 |
forky, ftbfs, sid |
|
1097365 |
massxpert2: ftbfs with GCC-15 |
forky, sid |
|
1097402 |
minexpert2: ftbfs with GCC-15 |
forky, sid |
|
964082 |
parsinsert fails it's tests when built with -O2 |
bookworm, bullseye, sid, trixie |
|
1085786 |
porechop: Python SyntaxWarning |
|
|
1111708 |
probcons: Uses deprecated BSD file reference |
patch |
|
1111758 |
r-bioc-beachmat: autopkgtest regression: isNamespaceLoaded("beachmat.hdf5") is not TRUE |
|
|
1111412 |
ska: autopkgtest fails due to googletest 1.17 no longer supporting C++ prior to C++17 |
|
|
976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid, trixie |
1087093 |
spades: Python SyntaxWarning |
|
|
1106622 |
sra-sdk ftbfs with libxml 2.14.x from experimental |
forky, ftbfs, patch, sid |
|
1098008 |
tnseq-transit: ftbfs with GCC-15 |
forky, sid |
|
1098031 |
ugene: ftbfs with GCC-15 |
forky, sid |
|
1098098 |
wise: ftbfs with GCC-15 |
forky, sid |
|