Summary

Bugs of task bio

Total bugs: 175

Open bugs: 144

Fixed bugs: 31

Links to other tasks

Tasks overview

Biology 144 (1426)

Biology development 55 (708)

Next generation sequencing 16 (243)

Phylogeny 9 (75)

Cloud 43 (507)

Content management 0 (0)

Medical data 1 (9)

Dental 0 (0)

Epidemiology 1 (9)

Hospital information systems 2 (18)

Imaging 190 (1158)

Imaging development 96 (1003)

Laboratory 0 (0)

Oncology 2 (30)

Pharmacology 3 (27)

Physics 30 (288)

Practice 2 (9)

Psychology 8 (93)

Rehabilitation 1 (9)

Research 0 (0)

Statistics 2 (6)

Tools 35 (209)

Typesetting 64 (322)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	2
serious	14	1
important	37	2
normal	41	9
minor	4	3
wishlist	27	4

Summary bugs page of task Biology

Immediately looking into bugs of the dependencies of this task is advised (1426)^*

Open bugs in dependent packages

14 serious, 37 important, 41 normal, 4 minor, 27 wishlist

augustus (1) Homepage: http://bioinf.uni-greifswald.de/augustus/ Vcs Debian Med Packaging Team
869126	augustus: explicit dependency on libhts1, blocks transition
baitfisher (1) Homepage: https://github.com/cmayers/BaitFisher-package Vcs Debian Med Packaging Team
852839	baitfisher: FTBFS (32-bit): mixes ::size_t and faststring::size_t
ball (2) Homepage: http://www.ball-project.org/ Vcs Debian Med Packaging Team
784451	[ball] Qt4's WebKit removal	upstream
867660	ball: FTBFS with sip 4.19.x: sip: File::CannotWrite has not been defined
bcftools (4) Homepage: http://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
819617	FTBFS: any-i386 - floating point idiosyncracies	buster, sid, stretch
860682	bcftools: FTBFS on i386: Test failures	buster, sid, stretch
860704	python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1)	buster, sid, stretch
868958	bcftools FTBFS on 32bit: test failures
bedtools (1) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
747337	broken autopkgtest: missing dependency, not testing installed package, test failures	upstream
bio-tradis (1) Homepage: https://github.com/sanger-pathogens/Bio-Tradis Vcs Debian Med Packaging Team
866074	bio-tradis: autopkgtest regression
blasr (1) Homepage: https://github.com/PacificBiosciences/blasr Vcs Debian Med Packaging Team
860655	blasr: FTBFS on i386: unsatisfiable build-dependencies: libpbseq-dev (>= 0~20160912), libpbbam-dev	buster, sid, stretch
bowtie (2) Homepage: http://bowtie-bio.sourceforge.net/ Vcs Debian Med Packaging Team
864439	bowtie: FTBFS on mips64el - /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
864448	bowtie FTBFS on mips64el: /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
bppsuite (5) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
715691	[Mayhem] Bug report on bppsuite: bppalnscore crashes with exit status 139
715692	[Mayhem] Bug report on bppsuite: bppancestor crashes with exit status 139
715693	[Mayhem] Bug report on bppsuite: bppconsense crashes with exit status 139
715694	[Mayhem] Bug report on bppsuite: bppdist crashes with exit status 139
715695	[Mayhem] Bug report on bppsuite: bppml crashes with exit status 139
circlator (1) Homepage: http://sanger-pathogens.github.io/circlator/ Vcs Debian Med Packaging Team
860639	circlator: FTBFS on i386: unsatisfiable build-dependencies: python3-pysam (>= 0.8.1), spades, bwa (>= 0.7.12)	buster, sid, stretch
crac (2) Homepage: http://crac.gforge.inria.fr/ Vcs Debian Med Packaging Team
859300	crac: please make the build reproducible	patch
860690	crac: FTBFS on i386: build-dependency not installable: libjellyfish-2.0-dev	buster, sid, stretch
diamond-aligner (1) Homepage: https://github.com/bbuchfink/diamond Vcs Debian Med Packaging Team
865132	diamond-aligner FTBFS on ppc64el: undefined reference to Fixed_score_buffer
disulfinder (1) Homepage: http://disulfind.dsi.unifi.it/ Vcs Debian Med Packaging Team
853375	disulfinder: ftbfs with GCC-7	buster, sid
ea-utils (2) Homepage: https://expressionanalysis.github.io/ea-utils/ Vcs Debian Med Packaging Team
846858	src:ea-utils: New version available
862118	ea-utils: New upstream version available
emboss (1) Homepage: http://emboss.sourceforge.net Vcs Debian Med Packaging Team
682042	emboss-data: ships bulky taxonomy and gene ontology data
falcon (2) Homepage: https://github.com/PacificBiosciences/FALCON Vcs Debian Med Packaging Team
864376	falcon: properly fix test failure: Task Node(1-preads_ovl/m_00001) failed with exit-code=256
864378	falcon accidentally still built on x32
fastx-toolkit (1) Homepage: http://hannonlab.cshl.edu/fastx_toolkit/ Vcs Debian Med Packaging Team
853396	fastx-toolkit: ftbfs with GCC-7	buster, sid
filo (1) Homepage: https://github.com/arq5x/filo Vcs Debian Med Packaging Team
848335	Filo should be removed from Debian after Stretch release since it is unmaintained and can be replaced	newcomer
fitgcp (1) Homepage: http://sourceforge.net/projects/fitgcp/ Vcs Debian Med Packaging Team
860653	fitgcp: FTBFS on i386: build-dependency not installable: python-pysam	buster, sid, stretch
flexbar (2) Homepage: https://github.com/seqan/flexbar Vcs Debian Med Packaging Team
759006	flexbar: FTBFS on hppa: Flexbar.h:258: undefined reference to `tbb::pipeline::run(unsigned int)'
853403	flexbar: ftbfs with GCC-7	buster, sid
freebayes (1) Homepage: https://github.com/ekg/freebayes Vcs Debian Med Packaging Team
866646	freebayes FTBFS with libhts-dev 1.4.1-2
freecontact (2) Homepage: http://rostlab.org/ Vcs Debian Med Packaging Team
814617	freecontact: adequate reports symbol-size-mismatch /usr/bin/freecontact => _ZN11xercesc_3_16XMLUni18fgXercesLoadSchemaE
853405	freecontact: ftbfs with GCC-7	buster, sid
fsm-lite (1) Homepage: https://github.com/nvalimak/fsm-lite Vcs Debian Med Packaging Team
860661	fsm-lite: FTBFS on i386: build-dependency not installable: libsdsl-dev	buster, sid, stretch
gamgi (1) Homepage: http://www.gamgi.org/ Vcs Debichem Team
750139	gamgi: Conflicting return types of function gamgi_engine_iarray_push
garlic (3) Homepage: http://www.zucic.org/garlic/ Vcs Debichem Team
669296	garlic: debcheckout fails	pending
715937	[Mayhem] Bug report on garlic: garlic crashes with exit status 139
749656	garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour
gbrowse (1) Homepage: http://www.gbrowse.org/ Vcs Debian Med Packaging Team
857213	gbrowse: broken symlink: /usr/share/gbrowse/htdocs/i -> debian/gbrowse/var/cache/gbrowse/images
gentle (1) Homepage: http://gentle.magnusmanske.de Vcs Debian Med Packaging Team
732691	Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button
ghemical (1) Homepage: http://bioinformatics.org/ghemical/ghemical/ Vcs Debichem Team
826069	ghemical: does not display color or allow building	help
gromacs (1) Homepage: http://www.gromacs.org/ Vcs Debichem Team
644397	Provide runtime detection for CPU SIMD capabilities	upstream
harvest-tools (1) Homepage: http://harvest.readthedocs.org/en/latest/content/harvest-tools.html Vcs Debian Med Packaging Team
853440	harvest-tools: ftbfs with GCC-7	buster, sid
htslib (1) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
866137	htslib autopkgtest is broken in 1.4.1-2
iva (1) Homepage: https://github.com/sanger-pathogens/iva Vcs Debian Med Packaging Team
860640	iva: FTBFS on i386: build-dependency not installable: python3-pysam	buster, sid, stretch
jalview (1) Homepage: http://www.jalview.org Vcs Debian Java Maintainers
849025	jalview: FTBFS: error: cannot find symbol EnumCallback
jellyfish (2) Homepage: http://www.cbcb.umd.edu/software/jellyfish/ Vcs Debian Med Packaging Team
863015	jellyfish: please make the output reproducible	patch
865608	jellyfish shouldn't disable PIE	patch
jmol (1) Homepage: http://jmol.sourceforge.net/ Vcs Debichem Team
712791	jmol - exporting the image as PDF saves only partial image	patch
khmer (2) Homepage: http://khmer.readthedocs.org Vcs Debian Med Packaging Team
851830	arm64 has flaky tests
862380	khmer: FTBFS with Python 3.6	buster, patch, sid
kineticstools (1) Homepage: https://github.com/PacificBiosciences/kineticsTools Vcs Debian Med Packaging Team
860636	kineticstools: FTBFS on i386: build-dependency not installable: python-pbcore (>= 1.2.8)	buster, sid, stretch
last-align (1) Homepage: http://last.cbrc.jp/ Vcs Debian Med Packaging Team
866438	last-align: depends on obsolete python-imaging (replace with python3-pil or python-pil)	buster, sid
libvcflib (1) Homepage: https://github.com/ekg/vcflib Vcs Debian Med Packaging Team
860665	libvcflib: FTBFS on i386: build-dependency not installable: libssw-dev	buster, sid, stretch
logol (1) Homepage: http://logol.genouest.org Vcs Debian Med Packaging Team
804579	logol-bin: bogus hardcoded dependency on libncursesw5
mapsembler2 (1) Homepage: http://colibread.inria.fr/mapsembler2/ Vcs Debian Med Packaging Team
765285	mapsembler2: FTBFS on mips mipsel ppc sparc when 8 byte __sync* builtins are used
mhap (1) Homepage: http://mhap.readthedocs.org/en/stable/ Vcs Debian Med Packaging Team
860672	mhap: FTBFS on i386: build-dependency not installable: libssw-java	buster, sid, stretch
nanopolish (1) Homepage: https://github.com/jts/nanopolish Vcs Debian Med Packaging Team
853568	nanopolish: ftbfs with GCC-7	buster, sid
ncbi-tools6 (1) Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Vcs Debian Med Packaging Team
225651	ncbi-tools-x11: want Cn3D++
openms (5) Homepage: http://open-ms.sourceforge.net/ Vcs The Debichem Group
784502	[openms] Qt4's WebKit removal
816562	libopenms2.0: fails to upgrade from 'jessie' - trying to overwrite /usr/share/man/man3/libopenms.3.gz
822412	openms: non-free WSDL-Schema (ND); incomplete copyright (missing DSL, BSL-1.0 licenses)
853595	openms: ftbfs with GCC-7	buster, sid
865240	Please update dependencies from latex-xcolor to tl-latex-recommended	buster, sid
pbalign (1) Homepage: https://github.com/PacificBiosciences/pbalign Vcs Debian Med Packaging Team
860676	pbalign: FTBFS on i386: build-dependency not installable: python-pbcore (>= 0.8.5)	buster, sid, stretch
pbbarcode (1) Homepage: https://github.com/PacificBiosciences/pbbarcode Vcs Debian Med Packaging Team
860631	pbbarcode: FTBFS on i386: unsatisfiable build-dependencies: python-pbcore, pbh5tools	buster, sid, stretch
pbdagcon (1) Homepage: https://github.com/PacificBiosciences/pbdagcon Vcs Debian Med Packaging Team
860711	pbdagcon: FTBFS on i386: unsatisfiable build-dependencies: libpbseq-dev, libpbbam-dev	buster, sid, stretch
pbgenomicconsensus (1) Homepage: https://github.com/PacificBiosciences/GenomicConsensus Vcs Debian Med Packaging Team
860669	pbgenomicconsensus: FTBFS on i386: build-dependency not installable: python-pbcore (>= 1.2.9)	buster, sid, stretch
pbh5tools (1) Homepage: https://github.com/PacificBiosciences/pbh5tools Vcs Debian Med Packaging Team
860616	pbh5tools: FTBFS on i386: build-dependency not installable: python-pbcore	buster, sid, stretch
pbsim (1) Homepage: https://code.google.com/archive/p/pbsim/ Vcs Debian Med Packaging Team
853604	pbsim: ftbfs with GCC-7	buster, sid
perm (1) Homepage: https://omictools.com/perm-tool Vcs Debian Med Packaging Team
853609	perm: ftbfs with GCC-7	buster, sid
physamp (1) Homepage: http://biopp.univ-montp2.fr/forge/physamp Vcs Debian Med Packaging Team
868919	physamp: FTBFS: AlignmentOptimizer.cpp:39:32: fatal error: Bpp/Seq/Alphabet.all: No such file or directory	buster, sid
pirs (2) Homepage: https://github.com/galaxy001/pirs Vcs Debian Med Packaging Team
861367	pirs: Please do not depend on transitional dummy pkg ttf-liberation
865655	pirs shouldn't disable PIE	patch
poa (2) Homepage: http://poamsa.sourceforge.net/ Vcs Debian Med Packaging Team
848332	src:poa: Please add autopkgtest	newcomer
864558	poa FTCBFS: uses the build architecture compiler, runs tests despite DEB_BUILD_OPTIONS=nocheck	patch
populations (1) Homepage: http://www.bioinformatics.org/~tryphon/populations/ Not maintained in Vcs Georges Khaznadar
716580	[Mayhem] Bug report on populations: populations crashes with exit status 139
prime-phylo (1) Homepage: http://prime.sbc.su.se Vcs Debian Med Packaging Team
813250	prime-phylo: FTBFS on hppa: undefined boost references
primer3 (1) Homepage: http://primer3.sourceforge.net Vcs Debian Med Packaging Team
853621	primer3: ftbfs with GCC-7	buster, sid
probabel (1) Homepage: http://www.genabel.org Vcs Debian Med Packaging Team
865191	probabel FTBFS on big endian: FAIL: 5
proda (1) Homepage: http://proda.stanford.edu/ Vcs Debian Med Packaging Team
848333	src:proda: Please add autopkgtest	newcomer
pymol (6) Homepage: http://www.pymol.org Vcs Debichem Team
602610	Package freemol.mengine for full modeling capabilities
651609	pymol: Setting-Error: type read mismatch (int) 667
703782	pymol: Unable to launch the Menu
709306	pymol: Crashes when running within xrdp/vnc (no 3D support)
765794	Race condition when running scripts in "stdin" mode
783653	pymol: Segmentation fault immediately after loading pdb
python-biomaj3 (2) Homepage: https://github.com/genouest/biomaj Vcs Debian Med Packaging Team
866547	python-biomaj3 encoding issue during build	fixed-upstream, patch
866548	src:python-biomaj3: Excessive build-depends complicate python3 transition	patch
qiime (1) Homepage: http://www.qiime.org/ Vcs Debian Med Packaging Team
820308	qiime: many unsatisfiable dependencies
qtltools (1) Homepage: https://qtltools.github.io/qtltools/ Vcs Debian Med Packaging Team
857454	qtltools: please make the build reproducible	patch, pending
r-cran-treescape (1) Homepage: https://cran.r-project.org/package=treescape Vcs Debian Med Packaging Team
845753	r-cran-treescape FTBFS on armhf, i386: Error: segfault from C stack overflow
rapmap (1) Homepage: https://github.com/COMBINE-lab/RapMap Vcs Debian Med Packaging Team
860688	rapmap: FTBFS on i386: build-dependency not installable: libjellyfish-2.0-dev	buster, sid, stretch
rasmol (3) Homepage: http://rasmol.org Vcs Debian Science Maintainers
767296	rasmol: ftbfs on ppc64el -- conflict with vector keyword	patch
790196	rasmol: depends on vte which is deprecated	buster, sid, stretch
821023	rasmol: Short descriptions should begin with lowercase	l10n, patch
reapr (1) Homepage: http://www.sanger.ac.uk/science/tools/reapr Vcs Debian Med Packaging Team
865130	reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz'	upstream
rna-star (1) Homepage: https://github.com/alexdobin/STAR/ Vcs Debian Med Packaging Team
868742	rna-star should remove s390x from the architecture list
rnahybrid (1) Homepage: http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/submission.html Vcs Debian Med Packaging Team
861281	rnahybrid: FTBFS on armel	help
rsem (1) Homepage: http://deweylab.biostat.wisc.edu/rsem/ Vcs Debian Med Packaging Team
847569	rsem: New version available
salmon (1) Homepage: https://github.com/COMBINE-lab/salmon Vcs Debian Med Packaging Team
860681	salmon: FTBFS on i386: unsatisfiable build-dependencies: libjellyfish-2.0-dev (> 2.2.3-2), libbwa-dev	buster, sid, stretch
sga (2) Homepage: https://github.com/jts/sga Vcs Debian Med Packaging Team
853656	sga: ftbfs with GCC-7	buster, sid
860643	sga: FTBFS on i386: build-dependency not installable: python-pysam	buster, sid, stretch
snap-aligner (2) Homepage: http://snap.cs.berkeley.edu/ Vcs Debian Med Packaging Team
848589	snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated)
860652	snap-aligner: FTBFS on i386: SNAPLib/SortedDataWriter.cpp:338:70: error: no matching function for call to 'max(long unsigned int, _int64)'	buster, sid, stretch
sortmerna (1) Homepage: http://bioinfo.lifl.fr/RNA/sortmerna/ Vcs Debian Med Packaging Team
818505	sortmerna FTBFS on !x86	buster, sid
spades (3) Homepage: http://bioinf.spbau.ru/en/spades Vcs Debian Med Packaging Team
853113	spades: Fails to build with unhelpful error message in a "low" memory machine
853666	spades: ftbfs with GCC-7	buster, sid
860677	spades: FTBFS on i386: unsatisfiable build-dependencies: libssw-dev, bwa	buster, sid, stretch
stacks (1) Homepage: http://creskolab.uoregon.edu/stacks/ Vcs Debian Med Packaging Team
868864	stacks doesn't migrate to testing, dependency doesn't exist on some architectures	buster, sid
staden-io-lib (1) Homepage: http://staden.sourceforge.net/ Vcs Debian Med Packaging Team
710225	staden-io-lib: library name should follow ABI version (not project version)
t-coffee (2) Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html Vcs Debian Med Packaging Team
716373	[Mayhem] Bug report on t-coffee: t_coffee crashes with exit status 139	help
853677	t-coffee: ftbfs with GCC-7	buster, sid
theseus (1) Homepage: http://www.theseus3d.org Vcs Debian Med Packaging Team
853681	theseus: ftbfs with GCC-7	buster, sid
tophat (1) Homepage: http://ccb.jhu.edu/software/tophat Vcs Debian Med Packaging Team
780816	tophat: contains and uses convience copy of samtools 0.1.18
tree-puzzle (1) Homepage: http://www.tree-puzzle.de Vcs Debian Med Packaging Team
806214	tree-puzzle: Package fails test suite
treeviewx (1) Homepage: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/ Vcs Debian Med Packaging Team
846481	src:treeviewx: Please remove statically linked code copy of libncl
trinityrnaseq (3) Homepage: http://trinityrnaseq.github.io/ Vcs Debian Med Packaging Team
853687	trinityrnaseq: ftbfs with GCC-7	buster, sid
860645	trinityrnaseq: FTBFS on i386: unsatisfiable build-dependencies: jellyfish (>= 2.1.4), parafly	buster, sid, stretch
865262	trinityrnaseq: please build-depend on automake, not obsolete automake1.11

Open bugs in suggested packages

2 grave, 1 serious, 2 important, 9 normal, 3 minor, 4 wishlist

arb (3) Homepage: http://www.arb-home.de/ Vcs Debian Med Packaging Team
857283	arb-common: broken symlinks: /usr/lib/arb/bin/mafft-*, /etc/arb/inputMasks/format.readme
862913	[INTL:id] initial Indonesian debconf translation	l10n, patch
866151	arb: transfig package renamed to fig2dev	patch
autodocktools (2) Homepage: http://autodock.scripps.edu/ Vcs Debian Med Packaging Team
580670	autodocktools: Please split out non-gui/biochemistry-oriented python bits
585244	autodocktools: Python string exceptions no more allowed in Python 2.6	upstream
beast-mcmc (1) Homepage: http://beast.bio.ed.ac.uk/ Vcs Debian Med Packaging Team
780428	beast-mcmc: restrict arch from all to amd64
biomaj (3) Homepage: http://biomaj.genouest.org Vcs Debian Med Packaging Team
732858	Add MariaDB as alternative dependency
803116	biomaj: references to non-existent license "CeCILL-A"
848497	src:biomaj: New upstream version available
biomaj-watcher (2) Homepage: http://biomaj.genouest.org Vcs Debian Med Packaging Team
732862	Add MariaDB as an alternative dependency
866980	biomaj-watcher: fails to upgrade from 'jessie': Exception in thread "main" java.lang.UnsupportedClassVersionError: WatcherConfigurator : Unsupported major.minor version 52.0
cain (2) Homepage: http://cain.sourceforge.net Vcs Debian Med Packaging Team
715587	[Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverage crashes with exit status 139	help
715588	[Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverageAps crashes with exit status 139	help
debian-science (2) Homepage: http://wiki.debian.org/DebianScience/ Vcs Debian Science Team
772407	science-config: bashism in /bin/sh script
796771	science-geography: Depends on no longer built qgis-plugin-grass
emboss-explorer (1) Homepage: http://embossgui.sourceforge.net/ Vcs Debian Med Packaging Team
861038	emboss-explorer: broken symlink: /usr/share/doc/emboss-explorer/html -> ../../EMBOSS/doc/html/emboss/apps
mgltools-pmv (3) Homepage: http://mgltools.scripps.edu/ Vcs Debian Med Packaging Team
855485	runPmv script does not work
855494	mgltools-pmv: runPmv does not start
855701	runPmv script does not work
mobyle (1) Homepage: https://projets.pasteur.fr/projects/mobyle Vcs Debian Med Packaging Team
866442	mobyle: depends on obsolete python-imaging (replace with python3-pil or python-pil)	buster, sid
ugene (1) Homepage: http://ugene.unipro.ru Vcs Debian Med Packaging Team
868885	ugene wont find translate

Done bugs

adun.app (1) Homepage: http://diana.imim.es/Adun Vcs Debian Med Packaging Team
749733	adun.app: GCC warnings that may lead to runtime issues with new GNUstep libraries	buster, jessie, sid, stretch
ariba (1) Homepage: https://github.com/sanger-pathogens/ariba Vcs Debian Med Packaging Team
859111	ariba FTBFS with bowtie2 2.3.1-1	buster, fixed-upstream, sid, upstream
bcftools (2) Homepage: http://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
865006	bcftools FTBFS with htslib 1.4.1-2: [E::hts_idx_push] Region 536870912..536870913 cannot be stored in a tbi index. Try using a csi index with min_shift = 14, n_lvls >= 6	buster, sid
865060	bcftools FTBFS: Usage: test-regidx [OPTIONS]	patch
biomaj-watcher (1) Homepage: http://biomaj.genouest.org Vcs Debian Med Packaging Team
866066	biomaj-watcher: throws ClassNotFoundException: org.slf4j.LoggerFactory in tomcat logs
bwa (1) Homepage: http://bio-bwa.sourceforge.net/ Vcs Debian Med Packaging Team
853859	bwa: Segmentation fault with specific data set
cd-hit (1) Homepage: http://weizhong-lab.ucsd.edu/cd-hit/ Vcs Debian Med Packaging Team
866330	cd-hit: please make the build reproducible	patch
ffindex (1) Homepage: http://www.splashground.de/~andy/programs/FFindex/ Vcs Debian Med Packaging Team
851658	ffindex: autopkgtests need 6GB of memory to run	patch
gbrowse (2) Homepage: http://www.gbrowse.org/ Vcs Debian Med Packaging Team
826458	gbrowse: Unescaped left brace in regex is deprecated
833885	gbrowse: ships a deterministic/predictable OpenID consumer secret	security
hmmer2 (1) Homepage: http://hmmer.janelia.org/ Vcs Debian Med Packaging Team
865099	hmmer2 FTBFS on i386: prep command at line 7 failed with status 34304
htslib (6) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
749367	htslib FTBFS on testing for mips/mipsel	buster, moreinfo, patch, sid, stretch
774109	htslib: FTBFS on hppa
800469	htslib FTBFS on armhf, bus error.	buster, patch, sid, stretch
849667	htslib: FTBFS on armhf: [test] Bus error	buster, patch, sid, stretch
865010	htslib: use -fPIC to fix FTBFS on s390x	patch
865012	htslib FTBFS on i386: test_vcf_{api,sweep} failed	patch, upstream
phyml (2) Homepage: http://www.atgc-montpellier.fr/phyml Vcs Debian Med Packaging Team
865654	phyml shouldn't disable PIE	patch
866139	phyml uses -march=native
prank (1) Homepage: http://wasabiapp.org/software/prank/ Vcs Debian Med Packaging Team
848329	src:prank: Please add autopkgtest	newcomer
probabel (1) Homepage: http://www.genabel.org Vcs Debian Med Packaging Team
865251	Please update dependencies from latex-xcolor to tl-latex-recommended	buster, sid
pycorrfit (1) Homepage: http://paulmueller.github.io/PyCorrFit Vcs Debian Med Packaging Team
865244	Please update dependencies from latex-xcolor to tl-latex-recommended	buster, sid
python-cogent (1) Homepage: http://pycogent.org/ Vcs Debian Med Packaging Team
730515	cd-hit-est is cdhit-est in Debian [Why?]
r-bioc-gviz (1) Homepage: https://bioconductor.org/packages/Gviz/ Vcs Debian Med Packaging Team
862039	r-bioc-gviz: accesses the internet during build
raxml (1) Homepage: http://www.exelixis-lab.org/ Vcs Debian Med Packaging Team
865658	raxml shouldn't disable PIE	patch
samtools (1) Homepage: http://www.htslib.org/ Vcs Debian Med Packaging Team
865008	samtools FTBFS with htslib 1.4.1-2: error: conflicting types for 'errmod_t'	buster, sid
seqan2 (1) Homepage: http://www.seqan.de/ Vcs Debian Med Packaging Team
862484	seqan2: please make the build reproducible	patch
stacks (2) Homepage: http://creskolab.uoregon.edu/stacks/ Vcs Debian Med Packaging Team
848464	stacks-web: Should Depends/Recommends the metapackage default-mysql-*
865668	stacks shouldn't disable PIE	patch
trimmomatic (1) Homepage: http://www.usadellab.org/cms/index.php?page=trimmomatic Vcs Debian Med Packaging Team
867535	trimmomatic fails on spaces in filenames	patch
vsearch (1) Homepage: https://github.com/torognes/vsearch/ Vcs Debian Med Packaging Team
855340	Spurious build dep on libssl-dev

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0