Summary

Bugs of task bio

Total bugs: 211

Open bugs: 155

Fixed bugs: 56

Links to other tasks

Tasks overview

Biology 155 (1342)

Biology development 76 (572)

Next generation sequencing 7 (87)

Phylogeny 3 (21)

Cloud 33 (291)

Content management 0 (0)

Covid-19 131 (1115)

Medical data 1 (3)

Dental 0 (0)

Epidemiology 3 (18)

Hospital information systems 0 (0)

Imaging 227 (1053)

Imaging development 87 (563)

Laboratory 1 (9)

Oncology 1 (9)

Pharmacology 1 (9)

Physics 25 (180)

Practice 3 (27)

Psychology 5 (47)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 0 (0)

Tools 33 (218)

Typesetting 68 (547)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	1	0
serious	4	1
important	25	4
normal	81	9
minor	10	1
wishlist	12	7

Summary bugs page of task Biology

Immediately looking into bugs of the dependencies of this task is advised (1342)^*

Open bugs in dependent packages

1 grave, 4 serious, 25 important, 81 normal, 10 minor, 12 wishlist

abyss (1) Homepage: https://github.com/bcgsc/abyss Vcs Debian Med Packaging Team
920282	abyss fails to build on hurd - googletest EXPECT_DEATH
acedb (1) Homepage: http://www.acedb.org/ Vcs Debian Med Packaging Team
967243	acedb: depends on deprecated GTK 2
ball (1) Homepage: http://www.ball-project.org/ Vcs Debian Med Packaging Team
982365	ball: reduce Build-Depends
bamtools (2) Homepage: https://github.com/pezmaster31/bamtools/wiki Vcs Debian Med Packaging Team
865130	reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz'	ftbfs, upstream
983981	bamtools: ftbfs with GCC-11	bookworm, sid
bcftools (4) Homepage: http://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
819617	FTBFS: any-i386 - floating point idiosyncracies	bullseye, buster, ftbfs, sid, stretch
860682	bcftools: FTBFS on i386: Test failures	bullseye, buster, ftbfs, sid, stretch
860704	python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1)	bullseye, buster, ftbfs, sid, stretch
870060	bcftools FTBFS on big endian: 107 tests failed	ftbfs, upstream
blasr (1) Homepage: https://github.com/PacificBiosciences/blasr Vcs Debian Med Packaging Team
983631	blasr FTCBFS: multiple reasons	patch
cdbfasta (1) Homepage: https://github.com/gpertea/cdbfasta Vcs Debian Med Packaging Team
962675	can cdbfasta be marked Multi-Arch: foreign?
changeo (1) Homepage: https://changeo.readthedocs.io Vcs Debian Med Packaging Team
970597	src:changeo: no autopkgtest available yet	newcomer
cif-tools (1) Homepage: https://github.com/PDB-REDO/cif-tools Vcs Debian Med Packaging Team
984015	cif-tools: ftbfs with GCC-11	bookworm, sid
clonalorigin (2) Homepage: https://github.com/xavierdidelot/clonalorigin Vcs Debian Med Packaging Team
884475	clonalorigin: FTBFS on alpha: tests time out	upstream, wontfix
984018	clonalorigin: ftbfs with GCC-11	bookworm, sid
clustalw (1) Homepage: http://www.clustal.org/clustal2/ Vcs Debian Med Packaging Team
978784	clustalw: ftbfs with autoconf 2.70	bookworm, sid
crac (1) Homepage: https://crac.gforge.inria.fr/ Vcs Debian Med Packaging Team
978794	crac: ftbfs with autoconf 2.70	bookworm, sid
datamash (1) Homepage: https://savannah.gnu.org/projects/datamash/ Vcs Debian Science Maintainers
982869	datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors	ftbfs, upstream
dawg (1) Homepage: https://github.com/reedacartwright/dawg Vcs Debian Med Packaging Team
903886	dawg: Test suite fails	upstream
deepnano (1) Homepage: https://bitbucket.org/vboza/deepnano Vcs Debian Med Packaging Team
921566	deepnano: autopkgtest times out since 2019-01-11
density-fitness (1) Homepage: https://github.com/PDB-REDO/density-fitness Vcs Debian Med Packaging Team
984034	density-fitness: ftbfs with GCC-11	bookworm, sid
disulfinder (1) Homepage: https://disulfind.dsi.unifi.it/ Vcs Debian Med Packaging Team
984036	disulfinder: ftbfs with GCC-11	bookworm, sid
dssp (1) Homepage: https://github.com/PDB-REDO/dssp Vcs Debian Med Packaging Team
984042	dssp: ftbfs with GCC-11	bookworm, sid
ea-utils (3) Homepage: https://expressionanalysis.github.io/ea-utils/ Vcs Debian Med Packaging Team
846858	src:ea-utils: New version available
862118	ea-utils: New upstream version available
984043	ea-utils: ftbfs with GCC-11	bookworm, sid
emboss (2) Homepage: http://emboss.sourceforge.net Vcs Debian Med Packaging Team
682042	emboss-data: ships bulky taxonomy and gene ontology data
982036	emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal	bookworm, ftbfs, help, sid
falcon (2) Homepage: https://github.com/PacificBiosciences/FALCON Vcs Debian Med Packaging Team
902132	falcon: FTBFS since python-networkx version 2.1-1; fails in test suite	ftbfs, pending
936503	falcon: Python2 removal in sid/bullseye	bullseye, fixed-upstream, pending, sid, upstream
fastqtl (1) Homepage: http://fastqtl.sourceforge.net/ Vcs Debian Med Packaging Team
984055	fastqtl: ftbfs with GCC-11	bookworm, sid
freebayes (1) Homepage: https://github.com/ekg/freebayes Vcs Debian Med Packaging Team
984139	freebayes: ftbfs with GCC-11	bookworm, sid
gamgi (2) Homepage: http://www.gamgi.org/ Vcs Debichem Team
750139	gamgi: Conflicting return types of function gamgi_engine_iarray_push	upstream
967366	gamgi: depends on deprecated GTK 2
garli (1) Homepage: https://github.com/Ashod/garli Vcs Debian Med Packaging Team
907905	garli: FTBFS randomly (failing tests)	fixed-upstream, ftbfs, upstream
garlic (2) Homepage: http://www.zucic.org/garlic/ Vcs Debichem Team
715937	[Mayhem] Bug report on garlic: garlic crashes with exit status 139
749656	garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour
gatb-core (3) Homepage: https://github.com/GATB/gatb-core Vcs Debian Med Packaging Team
929564	gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit
983926	gatb-core: ftbfs with -march=x86-64-v2
984145	gatb-core: ftbfs with GCC-11	bookworm, sid
gdpc (3) Homepage: https://web.archive.org/web/20180212152753/http://www.frantz.fi/software/gdpc.php Vcs Debian Med Packaging Team
967379	gdpc: depends on deprecated GTK 2
981876	gdpc: flaky autopkgtest on i386	bullseye, sid
982103	gdpc: autopkgtest failure on s390x
gemma (1) Homepage: https://www.xzlab.org/software.html Vcs Debian Med Packaging Team
982692	gemma: FTBFS: dh_auto_test: error: make -j1 check returned exit code 2	bullseye, ftbfs, moreinfo, sid, unreproducible
gentle (1) Homepage: http://gentle.magnusmanske.de Vcs Debian Med Packaging Team
732691	Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button
ghemical (2) Homepage: http://bioinformatics.org/ghemical/ghemical/ Vcs Debichem Team
967392	ghemical: depends on deprecated GTK 2
967865	ghemical: depends on deprecated libglade2
graphlan (1) Homepage: https://bitbucket.org/nsegata/graphlan/wiki/Home Vcs Debian Med Packaging Team
981688	graphlan: Wrong homepage
gromacs (4) Homepage: http://www.gromacs.org/ Vcs Debichem Team
644397	Provide runtime detection for CPU SIMD capabilities	upstream
921784	gromacs: unhelpful error message from mpicxx.openmpi	unreproducible
983942	gromacs: ftbfs with -march=x86-64-v3
984161	gromacs: ftbfs with GCC-11	bookworm, sid
hinge (1) Homepage: https://github.com/HingeAssembler/HINGE Vcs Debian Med Packaging Team
958244	Use system libinih-dev
htslib (1) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
978835	htslib: ftbfs with autoconf 2.70	bookworm, sid
igdiscover (1) Homepage: http://docs.igdiscover.se/en/stable/ Vcs Debian Med Packaging Team
977067	igdiscover: test suite flaky, possibly on high core count machines	confirmed, moreinfo, unreproducible
indelible (1) Homepage: http://abacus.gene.ucl.ac.uk/software/indelible/ Vcs Debian Med Packaging Team
978837	indelible: ftbfs with autoconf 2.70	bookworm, sid
infernal (1) Homepage: http://eddylab.org/infernal/ Vcs Debian Med Packaging Team
978841	infernal: ftbfs with autoconf 2.70	bookworm, sid
jalview (2) Homepage: https://www.jalview.org Vcs Debian Java Maintainers
983579	jalview: [INTL:de] initial German debconf translation	l10n, patch
983580	jalview: Questions/Corrections for Debconf template
jellyfish (2) Homepage: https://www.cbcb.umd.edu/software/jellyfish/ Vcs Debian Med Packaging Team
978843	jellyfish: ftbfs with autoconf 2.70	bookworm, sid
983273	jellyfish: Homepage: needs updating
jellyfish1 (2) Homepage: https://www.cbcb.umd.edu/software/jellyfish/ Vcs Debian Med Packaging Team
875328	jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined	upstream, wontfix
978842	jellyfish1: ftbfs with autoconf 2.70	bookworm, sid
jmol (3) Homepage: http://jmol.sourceforge.net/ Vcs Debichem Team
712791	jmol - exporting the image as PDF saves only partial image	patch
872418	jmol: Weblinks in Help do not work
981989	jmol: FTBFS with OpenJDK 17 due to JSObject.getWindow() removal	bookworm, ftbfs, sid
kallisto (1) Homepage: https://pachterlab.github.io/kallisto Vcs Debian Med Packaging Team
984073	kallisto: ftbfs with GCC-11	bookworm, sid
khmer (2) Homepage: https://khmer.readthedocs.org Vcs Debian Med Packaging Team
851830	arm64 has flaky tests
984079	khmer: ftbfs with GCC-11	bookworm, sid
kmc (1) Homepage: http://sun.aei.polsl.pl/kmc Vcs Debian Med Packaging Team
983930	kmc: ftbfs with -march=x86-64-v2
lamarc (1) Homepage: https://evolution.gs.washington.edu/lamarc/ Vcs Debian Med Packaging Team
984080	lamarc: ftbfs with GCC-11	bookworm, sid
lastz (1) Homepage: https://github.com/lastz/lastz Vcs Debian Med Packaging Team
984081	lastz: ftbfs with GCC-11	bookworm, sid
libfastahack (1) Homepage: https://github.com/ekg/fastahack Vcs Debian Med Packaging Team
984104	libfastahack: ftbfs with GCC-11	bookworm, sid
libncl (1) Homepage: https://github.com/mtholder/ncl Vcs Debian Med Packaging Team
984188	libncl: ftbfs with GCC-11	bookworm, sid
libsmithwaterman (1) Homepage: https://github.com/ekg/smithwaterman Vcs Debian Med Packaging Team
984207	libsmithwaterman: ftbfs with GCC-11	bookworm, sid
libvcflib (1) Homepage: https://github.com/vcflib/vcflib Vcs Debian Med Packaging Team
984212	libvcflib: ftbfs with GCC-11	bookworm, sid
ltrsift (1) Homepage: https://www.zbh.uni-hamburg.de/en/forschung/gi/software/ltrsift.html Vcs Debian Med Packaging Team
967603	ltrsift: depends on deprecated GTK 2
mapsembler2 (1) Homepage: http://colibread.inria.fr/mapsembler2/ Vcs Debian Med Packaging Team
984226	mapsembler2: ftbfs with GCC-11	bookworm, sid
mauve-aligner (1) Homepage: https://darlinglab.org/mauve/ Vcs Debian Med Packaging Team
982005	mauve-aligner: FTBFS with OpenJDK 17 due to rmic removal	bookworm, ftbfs, sid
mothur (1) Homepage: https://www.mothur.org Vcs Debian Med Packaging Team
984243	mothur: ftbfs with GCC-11	bookworm, sid
mummer (1) Homepage: http://mummer.sourceforge.net/ Vcs Debian Med Packaging Team
956751	mummerplot incompatible with Debian's version of gnuplot
murasaki (1) Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/ Vcs Debian Med Packaging Team
984250	murasaki: ftbfs with GCC-11	bookworm, sid
ncbi-blast+ (2) Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Vcs Debian Med Packaging Team
891197	Please switch to pcre2
956850	ncbi-blast+: Please provide /usr/bin/legacy_blast.pl
ncbi-tools6 (1) Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Vcs Debian Med Packaging Team
225651	ncbi-tools-x11: want Cn3D++
obitools (1) Homepage: https://pypi.python.org/pypi/OBITools Vcs Debian Med Packaging Team
935340	obitools: Port to Python3 needed	upstream
parsinsert (1) Homepage: http://sourceforge.net/projects/parsinsert/ Vcs Debian Med Packaging Team
964082	parsinsert fails it's tests when built with -O3	bullseye, moreinfo, sid, unreproducible
pbdagcon (1) Homepage: https://github.com/PacificBiosciences/pbdagcon Vcs Debian Med Packaging Team
983630	pbdagcon FTCBFS: python3 dependency not installable	patch
phyx (1) Homepage: https://github.com/FePhyFoFum/phyx Vcs Debian Med Packaging Team
978880	phyx: ftbfs with autoconf 2.70	bookworm, sid
plink (1) Homepage: http://zzz.bwh.harvard.edu/plink/ Vcs Debian Med Packaging Team
984293	plink: ftbfs with GCC-11	bookworm, sid
prime-phylo (1) Homepage: http://prime.sbc.su.se Vcs Debian Med Packaging Team
970599	src:prime-phylo: no autopkgtest available yet	newcomer
profphd (2) Homepage: http://predictprotein.org/ Vcs Debian Med Packaging Team
897605	profphd failure in stretch
942064	profphd: autopkgtest failure	bullseye, help, sid
proftmb (1) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
984301	proftmb: ftbfs with GCC-11	bookworm, sid
pymol (5) Homepage: http://www.pymol.org Vcs Debichem Team
602610	Package freemol.mengine for full modeling capabilities
709306	pymol: Crashes when running within xrdp/vnc (no 3D support)
765794	Race condition when running scripts in "stdin" mode
783653	pymol: Segmentation fault immediately after loading pdb
929700	pymol: Deprecation warning during startup
qutemol (3) Homepage: http://qutemol.sourceforge.net/ Vcs Debichem Team
642084	qutemol: Cannot start the program
939033	qutemol: Uses GifQuantizeBuffer - stops working with newer giflib
984316	qutemol: ftbfs with GCC-11	bookworm, sid
r-cran-treescape (1) Homepage: https://cran.r-project.org/package=treescape Vcs Debian R Packages Maintainers
961234	r-cran-treescape: FTBFS on ppc64el:Segmentation fault	bullseye, ftbfs, sid
rapmap (2) Homepage: https://github.com/COMBINE-lab/RapMap Vcs Debian Med Packaging Team
909766	Use Debian packaged spdlog instead of code copy of old version	help, upstream
976588	rapmap: FTBFS on arm64 (when trying to build arch:all)	bullseye, ftbfs, sid
seqan2 (2) Homepage: http://www.seqan.de/ Vcs Debian Med Packaging Team
892222	seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta	upstream
917851	seqan2 2.4.0+dfsg-9: FTBFS, alignment problem	ftbfs
seqsero (1) Homepage: https://github.com/denglab/SeqSero Vcs Debian Med Packaging Team
970598	src:seqsero: no autopkgtest available yet	newcomer
seqtools (1) Homepage: https://www.sanger.ac.uk/science/tools/seqtools Vcs Debian Med Packaging Team
967743	seqtools: depends on deprecated GTK 2
sga (1) Homepage: https://github.com/jts/sga Vcs Debian Med Packaging Team
983700	sga: reduce Build-Depends	patch
shovill (1) Homepage: https://github.com/tseemann/shovill Vcs Debian Med Packaging Team
970404	shovill: Please provide autopkgtest
skewer (1) Homepage: https://github.com/relipmoc/skewer Vcs Debian Med Packaging Team
984334	skewer: ftbfs with GCC-11	bookworm, sid
snap-aligner (1) Homepage: http://snap.cs.berkeley.edu/ Vcs Debian Med Packaging Team
848589	snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated)
spades (2) Homepage: http://cab.spbu.ru/software/spades/ Vcs Debian Med Packaging Team
853113	spades: Fails to build with unhelpful error message in a "low" memory machine
976523	spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS"	bullseye, ftbfs, sid
spoa (1) Homepage: https://github.com/rvaser/spoa Vcs Debian Med Packaging Team
984348	spoa: ftbfs with GCC-11	bookworm, sid
t-coffee (1) Homepage: http://www.tcoffee.org/Projects/tcoffee/index.html Vcs Debian Med Packaging Team
956848	t-coffee: should use "example" blastpgp.pl
tigr-glimmer (1) Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Vcs Debian Med Packaging Team
984367	tigr-glimmer: ftbfs with GCC-11	bookworm, sid
tortoize (1) Homepage: https://github.com/PDB-REDO/tortoize Vcs Debian Med Packaging Team
984369	tortoize: ftbfs with GCC-11	bookworm, sid
treeviewx (1) Homepage: https://github.com/rdmpage/treeviewx Vcs Debian Med Packaging Team
846481	src:treeviewx: Please remove statically linked code copy of libncl
trinityrnaseq (1) Homepage: https://trinityrnaseq.github.io/ Vcs Debian Med Packaging Team
981874	trinityrnaseq: flaky autopkgtest	bullseye, sid
tvc (1) Homepage: http://ioncommunity.thermofisher.com Vcs Debian Med Packaging Team
984370	tvc: ftbfs with GCC-11	bookworm, sid
umap-learn (1) Homepage: https://github.com/lmcinnes/umap Vcs Debian Med Packaging Team
980509	umap-learn: Binary package name should be python3-umap-learn	pending
vg (1) Homepage: https://github.com/vgteam/vg#vg Vcs Debian Med Packaging Team
976511	vg: FTBFS on arm64: configure: error: Could not find a version of the library!	bullseye, ftbfs, sid
viewmol (7) Homepage: http://viewmol.sourceforge.net/ Vcs Debichem Team
446750	reading vmol files: coord factor ignored and misdefined
446753	pdb import is broken
716250	[Mayhem] Bug report on viewmol: readpdb crashes with exit status 139
716256	[Mayhem] Bug report on viewmol: readgamess crashes with exit status 139
875522	viewmol: Please stop installing deprecated mimelnk files
938774	viewmol: Python2 removal in sid/bullseye	bullseye, sid
967229	viewmol: Unversioned Python removal in sid/bullseye	bullseye, sid
vsearch (1) Homepage: https://github.com/torognes/vsearch/ Vcs Debian Med Packaging Team
978918	vsearch: ftbfs with autoconf 2.70	bookworm, sid
zalign (1) Homepage: https://launchpad.net/zalign Vcs Debian Med Packaging Team
978928	zalign: ftbfs with autoconf 2.70	bookworm, sid

Open bugs in suggested packages

1 serious, 4 important, 9 normal, 1 minor, 7 wishlist

arb (3) Homepage: http://www.arb-home.de/ Vcs Debian Med Packaging Team
916406	libarb-dev: Missing symbols in static libraries
918015	[INTL:sv] Swedish strings for arb debconf	l10n, patch
926017	arb: Typo in package description: "website links unreachable, description outdated"
bcbio (1) Homepage: https://github.com/bcbio/bcbio-nextgen Vcs Debian Med Packaging Team
928076	bcbio: Workflows not ready for non-developers to depend on.
hdf5 (14) Homepage: http://hdfgroup.org/HDF5/ Vcs Gilles Filippini
638753	libhdf5-serial-1.8.7: threadsafe memory leaks	moreinfo
715959	[Mayhem] Bug report on hdf5-tools: gif2h5 crashes with exit status 139
716008	[Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139
716010	[Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139
716011	[Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139
716012	[Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139
740613	libhdf5-7: Please include support for compression with libaec
748587	Duplicate and conflicting definitions of variable FILENAME	upstream
839784	libhdf5-dev: pkg-config file references ONLY the C library
915807	hdf5: CVE-2017-17507	security, upstream
958174	hdf5: please add the hdf5plugins
968559	libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing	moreinfo
972537	please add --enable-ros3-vfd to the build options to allow RO access to HDF5 on S3
973261	libhdf5-openmpi-dev: installing requires /proc being mounted
intake (2) Homepage: https://github.com/intake/intake Vcs Debian Med Packaging Team
970312	src:intake: Please provide autopkgtest	newcomer
982699	intake: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13	bullseye, ftbfs, sid
python-loompy (1) Homepage: https://github.com/linnarsson-lab/loompy Vcs Debian Med Packaging Team
970309	src:python-loompy: Please provide autopkgtest	newcomer
q2-quality-control (1) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
982139	q2-quality-control: test skipped on ppc64el

Done bugs

axe-demultiplexer (1) Homepage: https://github.com/kdmurray91/axe Vcs Debian Med Packaging Team
982608	axe-demultiplexer: FTCBFS: unsatisfiable python3-sphinx dependency	patch
bedops (1) Homepage: https://github.com/bedops/bedops Vcs Debian Med Packaging Team
982965	bedops: reduce Build-Depends	patch
biomaj3-daemon (1) Homepage: https://github.com/genouest/biomaj-daemon Vcs Debian Med Packaging Team
982168	biomaj3-daemon: autopkgtest failure: No module named 'biomaj3_daemon'
circlator (1) Homepage: http://sanger-pathogens.github.io/circlator/ Vcs Debian Med Packaging Team
983142	circlator: reproducible builds: Generated tarball includes file mode	patch
codonw (1) Homepage: http://codonw.sourceforge.net Vcs Debian Med Packaging Team
982989	codonw FTCBFS: Multiple reasons	patch
cyvcf2 (1) Homepage: https://github.com/brentp/cyvcf2 Vcs Debian Med Packaging Team
956675	cyvcf2: test failures on ppc64el and s390x	bullseye, ftbfs, sid
disulfinder (1) Homepage: https://disulfind.dsi.unifi.it/ Vcs Debian Med Packaging Team
982290	disulfinder FTCBFS: hard codes the build architecture compiler g++	patch, upstream
drop-seq (2) Homepage: https://github.com/broadinstitute/Drop-seq/ Vcs Debian Med Packaging Team
982352	drop-seq-tools: Excessive dependendies
982617	drop-seq: autopkgtest regression	confirmed
eigensoft (1) Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/ Vcs Debian Med Packaging Team
980765	eigensoft: absolute path to fixgreen in /usr/bin/ploteig
estscan (1) Homepage: http://estscan.sourceforge.net/ Vcs Debian Med Packaging Team
981684	src:estscan: fails to migrate to testing for too long: FTBFS on mipsel	bullseye, ftbfs, sid
fastlink (1) Homepage: https://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html Vcs Debian Med Packaging Team
909713	fastlink: Please provide autopkgtest	newcomer
gmap (1) Homepage: http://research-pub.gene.com/gmap Vcs Debian Med Packaging Team
980484	gmap FTCBFS: AC_RUN_IFELSE	patch, upstream
htslib (3) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
749367	htslib FTBFS on testing for mips/mipsel	bullseye, buster, moreinfo, patch, sid, stretch
800469	htslib FTBFS on armhf, bus error.	bullseye, buster, ftbfs, patch, sid, stretch
849667	htslib: FTBFS on armhf: [test] Bus error	bullseye, buster, ftbfs, patch, sid, stretch
hyphy (2) Homepage: https://hyphy.org/ Vcs Debian Med Packaging Team
961382	hyphy: baseline violation on amd64/i386
977992	hyphy: FTBFS on hurd-i386: wrong reference to the build directory	patch
jalview (1) Homepage: https://www.jalview.org Vcs Debian Java Maintainers
849025	jalview: FTBFS: error: cannot find symbol EnumCallback	ftbfs
jellyfish (2) Homepage: https://www.cbcb.umd.edu/software/jellyfish/ Vcs Debian Med Packaging Team
973431	jellyfish ftbfs when built with -O3	bullseye, ftbfs, sid
976340	jellyfish FTBFS with -I in builddir	ftbfs
kineticstools (1) Homepage: https://github.com/PacificBiosciences/kineticsTools Vcs Debian Med Packaging Team
958471	src:kineticstools: Non-free data included in source
kmc (1) Homepage: http://sun.aei.polsl.pl/kmc Vcs Debian Med Packaging Team
954270	kmc: autopgktest times out on multimulticore hosts	confirmed
libssw (1) Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library Vcs Debian Med Packaging Team
982045	libssw: FTBFS with OpenJDK 17 due to unsupported javac source/target level 6	bookworm, ftbfs, sid
macsyfinder (2) Homepage: https://github.com/gem-pasteur/macsyfinder Vcs Debian Med Packaging Team
933928	macsyfinder: Port to Python3 needed	fixed-upstream
936977	macsyfinder: Python2 removal in sid/bullseye	bullseye, fixed-upstream, sid
mash (1) Homepage: https://mash.readthedocs.io Vcs Debian Med Packaging Team
970875	mash: inconsistent results on 32 vs 64 bits architectures
metastudent-data (2) Homepage: https://rostlab.org/owiki/index.php/Metastudent Vcs Debian Med Packaging Team
981293	metastudent-data breaks metastudent autopkgtest: 255	bullseye, help, sid, upstream
981294	src:metastudent-data: fails to migrate to testing for too long: autopkgtest regression	bullseye, sid
mipe (1) Homepage: http://mipe.sourceforge.net Vcs Debian Med Packaging Team
890788	mipe: Please provide autopkgtest	newcomer
msxpertsuite (1) Homepage: http://www.msxpertsuite.org/ Vcs The Debichem Group
982718	msxpertsuite: FTBFS: [ERROR] LazyFont - Failed to read font file /usr/share/texlive/texmf-dist/fonts/opentype/public/stix2-otf/STIX2Math.otf <java.io.FileNotFoundException: /usr/share/texlive/texmf-dist/fonts/opentype/public/stix2-otf/STIX2Math.otf (No such file or directory)>java.io.FileNotFoundException: /usr/share/texlive/texmf-dist/fonts/opentype/public/stix2-otf/STIX2Math.otf (No such file or directory)	bullseye, ftbfs, patch, sid
nanopolish (2) Homepage: https://github.com/jts/nanopolish Vcs Debian Med Packaging Team
960634	nanopolish: FTBFS on ppc64el (as well as ppc64 and powerpc), enumerator conflict	ftbfs
983767	nanopolish ftbfs with the nocheck profile
neobio (1) Homepage: http://neobio.sourceforge.net/ Vcs Debian Med Packaging Team
981926	neobio: FTBFS with OpenJDK 17 due to unsupported javac source/target level 6	bookworm, ftbfs, sid
openms (2) Homepage: http://www.openms.de Vcs The Debichem Group
975588	openms: FTBFS against boost_1.74	ftbfs
982567	openms build-depends on removed package.	upstream
pbsuite (1) Homepage: http://sourceforge.net/projects/pb-jelly Vcs Debian Med Packaging Team
982181	pbsuite: autopkgtest regression
plink2 (1) Homepage: https://www.cog-genomics.org/plink/2.0/ Vcs Debian Med Packaging Team
974003	src:plink2: fails to migrate to testing for too long: FTBFS on ppc64el	bullseye, sid
primer3 (1) Homepage: http://primer3.sourceforge.net Vcs Debian Med Packaging Team
962190	primer3: please disable Big Endian tests on autopkgtests too	patch
profnet (1) Homepage: https://www.predictprotein.org/ Vcs Debian Med Packaging Team
905206	profnet: autopkgtest regression	upstream
python-anndata (1) Homepage: https://github.com/theislab/anndata Vcs Debian Med Packaging Team
982098	python-anndata: autopkgtest failure on 32bit
q2-feature-classifier (1) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
974839	q2-feature-classifier: unsatisfiable build-dependency
r-bioc-mutationalpatterns (1) Homepage: https://bioconductor.org/packages/MutationalPatterns/ Vcs Debian R Packages Maintainers
983027	r-bioc-mutationalpatterns: autopkgtest regression in testing: no package called âBSgenome.Hsapiens.UCSC.hg19â
r-bioc-scater (1) Homepage: https://bioconductor.org/packages/scater/ Vcs Debian R Packages Maintainers
982115	r-bioc-scater: autopkgtest failure on i386
r-cran-seurat (1) Homepage: https://cran.r-project.org/package=Seurat Vcs Debian R Packages Maintainers
982421	r-cran-seurat: autopkgtest failure on i386/armhf	patch
repeatmasker-recon (1) Homepage: https://www.repeatmasker.org/ Vcs Debian Med Packaging Team
982912	repeatmasker-recon FTCBFS: hardcodes "make" in d/rules	patch
rna-star (1) Homepage: https://github.com/alexdobin/STAR/ Vcs Debian Med Packaging Team
983723	rna-star FTBFS on ppc64el due to -march=native	ftbfs
seer (1) Homepage: https://github.com/johnlees/seer Vcs Debian Med Packaging Team
984328	seer: ftbfs with GCC-11	bookworm, sid
seqan (2) Homepage: http://www.seqan.de/ Vcs Debian Med Packaging Team
972603	seqan: Needs update for new googletest
980685	seqan: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 returned exit code 2	bullseye, ftbfs, sid
seqan2 (1) Homepage: http://www.seqan.de/ Vcs Debian Med Packaging Team
972752	seqan2: FTBFS with DEB_BUILD_OPTIONS=reproducible=+fixfilepath	patch
simka (1) Homepage: https://github.com/GATB/simka Vcs Debian Med Packaging Team
982212	simka: autopkgtest needs same architecture list as simka
tree-puzzle (1) Homepage: http://www.tree-puzzle.de Vcs Debian Med Packaging Team
890790	tree-puzzle: Please provide autopkgtest	newcomer
vdjtools (2) Homepage: https://github.com/mikessh/vdjtools Vcs Debian Med Packaging Team
979760	vdjtools: autopkgtest failure: "java: not found"
982116	vdjtools: autopkgtest fails due to slightly differing result on !x86
wham-align (1) Homepage: http://research.cs.wisc.edu/wham Vcs Debian Med Packaging Team
982930	wham-align: FTCBFS: multiple reasons	patch

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0