Debian Med Project
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Summary
Bugs of task cloud
Total bugs: 56
Open bugs: 52
Fixed bugs: 4
Links to other tasks
Biology 327 (1777)
Phylogeny 15 (90)
Cloud 52 (288)
Covid-19 171 (1310)
Medical data 1 (1)
Dental 1 (3)
Epidemiology 3 (60)
Imaging 231 (1060)
Laboratory 1 (9)
Oncology 1 (3)
Pharmacology 1 (9)
Physics 28 (195)
Practice 7 (42)
Psychology 7 (39)
Research 0 (0)
Statistics 2 (4)
Tools 38 (241)
Typesetting 68 (556)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 2 0
important 3 0
normal 9 0
minor 34 0
wishlist 4 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (288)*

Open bugs in dependent packages

2 serious, 3 important, 9 normal, 34 minor, 4 wishlist
920282 abyss fails to build on hurd - googletest EXPECT_DEATH
1012893 anfo: ftbfs with GCC-12 help, bookworm, sid, ftbfs, trixie
1043665 aragorn: Fails to build source after successful build ftbfs, sid, trixie
1035113 arden: please add autopkgtests (to add coverage for python3-numpy)
1036488 arden: please add autopkgtests (to add coverage for python3-matplotlib)
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' upstream, ftbfs
1043881 bamtools: Fails to build source after successful build ftbfs, sid, trixie
1043957 bedtools: Fails to build source after successful build ftbfs, sid, trixie
1043996 biosquid: Fails to build source after successful build ftbfs, sid, trixie
1049808 biosquid: Fails to build binary packages again after successful build ftbfs, sid, trixie
1043697 bowtie: Fails to build source after successful build ftbfs, sid, trixie
1043792 cassiopee: Fails to build source after successful build ftbfs, sid, trixie
1043849 clustalo: Fails to build source after successful build ftbfs, sid, trixie
1043837 concavity: Fails to build source after successful build ftbfs, sid, trixie
982869 datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors ftbfs, upstream
1044977 datamash: Fails to build source after successful build ftbfs, sid, trixie
1045047 dssp: Fails to build source after successful build ftbfs, sid, trixie
682042 emboss-data: ships bulky taxonomy and gene ontology data
986043 emboss: uses media types that are not registered
1044987 fastlink: Fails to build source after successful build ftbfs, sid, trixie
1049797 freecontact: Fails to build binary packages again after successful build ftbfs, sid, trixie
1044467 genometools: Fails to build source after successful build ftbfs, sid, trixie
1044834 gff2aplot: Fails to build source after successful build ftbfs, sid, trixie
1041451 gmap: FTBFS on all !amd64 archs ftbfs, upstream
644397 Provide runtime detection for CPU SIMD capabilities upstream
983942 gromacs: ftbfs with -march=x86-64-v3
1048028 hisat2: Fails to build source after successful build ftbfs, sid, trixie
1045517 infernal: Fails to build source after successful build ftbfs, sid, trixie
1021557 jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) upstream
1046793 jellyfish: Fails to build source after successful build ftbfs, sid, trixie
1048396 last-align: Fails to build source after successful build ftbfs, sid, trixie
1047612 macs: Fails to build source after successful build ftbfs, sid, trixie
1048833 melting: Fails to build source after successful build ftbfs, sid, trixie
1045311 mira: Fails to build source after successful build ftbfs, sid, trixie
1049789 mira: Fails to build binary packages again after successful build ftbfs, sid, trixie
1045400 mrbayes: Fails to build source after successful build ftbfs, sid, trixie
1049739 mrbayes: Fails to build binary packages again after successful build ftbfs, sid, trixie
1048044 muscle3: Fails to build source after successful build ftbfs, sid, trixie
891197 Please switch to pcre2 sid, trixie
956850 ncbi-blast+: Please provide /usr/bin/legacy_blast.pl
984871 ncbi-blast+: Missing headers for shared libraries
1010110 ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' wontfix
225651 ncbi-tools-x11: want Cn3D++
1048822 plink2: Fails to build source after successful build ftbfs, sid, trixie
1045454 primer3: Fails to build source after successful build ftbfs, sid, trixie
1048254 proda: Fails to build source after successful build ftbfs, sid, trixie
917851 seqan2 2.4.0+dfsg-9: FTBFS, alignment problem ftbfs
1047218 seqan2: Fails to build source after successful build ftbfs, sid, trixie
1047681 smalt: Fails to build source after successful build ftbfs, sid, trixie
1040391 sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
956848 t-coffee: should use "example" blastpgp.pl
1049170 tree-puzzle: Fails to build source after successful build ftbfs, sid, trixie

Open bugs in suggested packages

Done bugs

1043871 biomaj3-cli: Fails to build source after successful build ftbfs, sid, trixie
1045094 src:gmap: fails to migrate to testing for too long: FTBFS on !amd64 sid, trixie
964082 parsinsert fails it's tests when built with -O2 bookworm, trixie, sid, bullseye
1037816 parsinsert: ftbfs with GCC-13 ftbfs, trixie, sid
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Thu, 28 Sep 2023 16:43:39 -0000