Debian Med Project
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Summary
Bugs of task cloud
Total bugs: 58
Open bugs: 43
Fixed bugs: 15
Links to other tasks
Biology 230 (1783)
Phylogeny 10 (60)
Cloud 43 (441)
Covid-19 147 (1382)
Medical data 1 (1)
Dental 1 (3)
Epidemiology 9 (125)
Imaging 211 (1005)
Laboratory 1 (9)
Oncology 1 (3)
Pharmacology 1 (9)
Physics 25 (189)
Practice 7 (48)
Psychology 6 (46)
Research 0 (0)
Statistics 3 (7)
Tools 37 (226)
Typesetting 62 (499)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 6 0
important 8 0
normal 11 0
minor 14 0
wishlist 4 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (441)*

Open bugs in dependent packages

6 serious, 8 important, 11 normal, 14 minor, 4 wishlist
920282 abyss fails to build on hurd - googletest EXPECT_DEATH
1066334 acedb: FTBFS: acein.c:2045:15: error: implicit declaration of function ‘add_history’ [-Werror=implicit-function-declaration] ftbfs, help, sid, trixie
1067631 src:altree: autopkgtest timeouts on armel, armhf and ppc64el
1012893 anfo: ftbfs with GCC-12 bookworm, ftbfs, help, sid, trixie
1061888 anfo: NMU diff for 64-bit time_t transition patch
1035113 arden: please add autopkgtests (to add coverage for python3-numpy)
1036488 arden: please add autopkgtests (to add coverage for python3-matplotlib)
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' ftbfs, upstream
1043837 concavity: Fails to build source after successful build ftbfs, sid, trixie
982869 datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors ftbfs, upstream
1044977 datamash: Fails to build source after successful build ftbfs, sid, trixie
1057439 datamash: "antimode" returns lowest, instead of least common, value
1045047 dssp: Fails to build source after successful build ftbfs, sid, trixie
682042 emboss-data: ships bulky taxonomy and gene ontology data
986043 emboss: uses media types that are not registered
1069098 emboss: all executables segfault on s390x bookworm, bullseye, sid, trixie
1069142 emboss: build time testsuite is failing silently
1049797 freecontact: Fails to build binary packages again after successful build ftbfs, sid, trixie
1069552 freecontact: FTBFS on armel: make[1]: *** [Makefile:469: all-recursive] Error 1 ftbfs, sid, trixie
644397 Provide runtime detection for CPU SIMD capabilities upstream
983942 gromacs: ftbfs with -march=x86-64-v3
1048028 hisat2: Fails to build source after successful build ftbfs, sid, trixie
1045517 infernal: Fails to build source after successful build ftbfs, sid, trixie
1021557 jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) upstream
1048396 last-align: Fails to build source after successful build ftbfs, sid, trixie
1048833 melting: Fails to build source after successful build ftbfs, sid, trixie
1066525 mlv-smile: FTBFS: src/allocateurs.c:45:39: error: implicit declaration of function ‘getpagesize’ [-Werror=implicit-function-declaration] ftbfs, pending, sid, trixie
891197 Please switch to pcre2 sid, trixie
956850 ncbi-blast+: Please provide /usr/bin/legacy_blast.pl
984871 ncbi-blast+: Missing headers for shared libraries
1010110 ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' wontfix
225651 ncbi-tools-x11: want Cn3D++
1069488 parsinsert: FTBFS on armhf: make[1]: *** [debian/rules:30: override_dh_auto_test] Error 1 ftbfs, sid, trixie
1048822 plink2: Fails to build source after successful build ftbfs, sid, trixie
1045454 primer3: Fails to build source after successful build ftbfs, sid, trixie
1064147 ftbfs: test failures affecting Bio.SeqIO.SeqXmIIO ftbfs, sid
1058479 python-cogent: please (temporarily) drop python3-numba dependencies wontfix
1068006 qiime: Please replace python3-appdirs dependency with platformdirs sid, trixie
917851 seqan2 2.4.0+dfsg-9: FTBFS, alignment problem ftbfs
1047218 seqan2: Fails to build source after successful build ftbfs, sid, trixie
1053411 sra-sdk: FTBFS with re2 >= 20230601 (which requires abseil) upstream
956848 t-coffee: should use "example" blastpgp.pl
1049170 tree-puzzle: Fails to build source after successful build ftbfs, sid, trixie

Open bugs in suggested packages

Done bugs

1066300 ampliconnoise: FTBFS: FCluster.c:230:13: error: implicit declaration of function ‘UpdateMinCacheForRow’; did you mean ‘UpdateMinCacheForMarkedRows’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1061931 biosquid: NMU diff for 64-bit time_t transition patch
1066709 fastdnaml: FTBFS: fastDNAml.h:228:28: error: implicit declaration of function ‘free’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1062403 freecontact: NMU diff for 64-bit time_t transition patch, sid, trixie
1062071 genometools: NMU diff for 64-bit time_t transition patch
1062344 htslib: NMU diff for 64-bit time_t transition patch
1064157 jellyfish: NMU diff for 64-bit time_t transition patch, sid, trixie
1064245 ncbi-tools6: NMU diff for 64-bit time_t transition patch, sid, trixie
964082 parsinsert fails it's tests when built with -O2 bookworm, bullseye, sid, trixie
1066653 prime-phylo: FTBFS: gb.tab.c:1096:16: error: implicit declaration of function ‘yylex’ [-Werror=implicit-function-declaration] ftbfs, patch, sid, trixie
1066478 readseq: FTBFS: readseq.c:801:5: error: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1040391 sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
1065961 sra-sdk: Please drop dependencies on python3-distutils ftbfs
1063189 staden-io-lib: NMU diff for 64-bit time_t transition patch, sid, trixie
1066705 wise: FTBFS: prior.c:102:12: error: implicit declaration of function ‘strcmp’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Tue, 23 Apr 2024 16:21:37 -0000