Debian Med Project
Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Alioth page.
Bugs of task cloud
Total bugs: 60
Open bugs: 40
Fixed bugs: 20
Links to other tasks
Biology 119 (1036)
Phylogeny 5 (33)
Cloud 40 (399)
Medical data 1 (0)
Dental 0 (0)
Epidemiology 0 (0)
Imaging 218 (1143)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 3 (27)
Physics 30 (225)
Practice 2 (0)
Psychology 9 (100)
Research 0 (0)
Statistics 2 (4)
Tools 35 (209)
Typesetting 94 (653)
critical 0 0
grave 0 0
serious 4 0
important 5 0
normal 21 0
minor 5 0
wishlist 5 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (399)*

Open bugs in dependent packages

4 serious, 5 important, 21 normal, 5 minor, 5 wishlist
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' upstream
747337 broken autopkgtest: missing dependency, not testing installed package, test failures upstream
732858 Add MariaDB as alternative dependency
803116 biomaj: references to non-existent license "CeCILL-A"
848497 src:biomaj: New upstream version available
866073 bioperl: autopkgtest regression
880347 bioperl-run: FTBFS: Test failures buster, sid
715587 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverage crashes with exit status 139 help
715588 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverageAps crashes with exit status 139 help
878374 please drop transitional package otf-symbols-circos
880465 dssp: FTBFS with boost1.65+ patch
682042 emboss-data: ships bulky taxonomy and gene ontology data
860653 fitgcp: FTBFS on i386: build-dependency not installable: python-pysam buster, sid, stretch
759006 flexbar: FTBFS on hppa: Flexbar.h:258: undefined reference to `tbb::pipeline::run(unsigned int)'
814617 freecontact: adequate reports symbol-size-mismatch /usr/bin/freecontact => _ZN11xercesc_3_16XMLUni18fgXercesLoadSchemaE
881114 freecontact: Transition to xerces-c 3.2 buster, sid
873859 gasic: Please add arm64
871727 grinder: FTBFS when debhelper does not export PERL_USE_UNSAFE_INC
644397 Provide runtime detection for CPU SIMD capabilities upstream
866137 htslib autopkgtest is broken in 1.4.1-2
879885 htslib FTCBFS: configures for the build architecture patch
881149 htslib FTBFS: test failures on i386 buster, sid
881170 htslib: please do not package cram/*.h headers
881359 htslib: please revert pkg-config change in fix_pkg-config.patch
881360 htslib: please do not package htslib*.mk makefile fragments
879622 macs: Please provide autopkgtest
225651 ncbi-tools-x11: want Cn3D++
879619 ncbi-tools6: Please provide autopkgtest
874155 FTBFS with Java 9: overrides core packages help, upstream
880258 picard-tools: FTBFS: error: package org.testng does not exist buster, sid
813250 prime-phylo: FTBFS on hppa: undefined boost references
672407 python-biopython: duplicate mathml2.dtd
820308 qiime: many unsatisfiable dependencies
861281 rnahybrid: FTBFS on armel help
879620 sra-sdk: Please provide autopkgtest
876840 staden-io-lib FTBFS on non-i386 32bit: FAIL: java help, upstream
716373 [Mayhem] Bug report on t-coffee: t_coffee crashes with exit status 139 help
780816 tophat: contains and uses convience copy of samtools 0.1.18
873866 tophat: Please add arm64
806214 tree-puzzle: Package fails test suite

Open bugs in suggested packages

Done bugs

864439 bowtie: FTBFS on mips64el - /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
864448 bowtie FTBFS on mips64el: /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
880375 cufflinks: FTBFS with boost1.65+
880767 embassy-domainatrix build depends on removed libgd2*-dev provides buster, sid
880768 embassy-domalign build depends on removed libgd2*-dev provides buster, sid
880769 embassy-domsearch build depends on removed libgd2*-dev provides buster, sid
880354 embassy-phylip: switch B-D from libgd2-xpm-dev to libgd-dev buster, sid
749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. buster, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, patch, sid, stretch
871314 htslib: new version break python-pysam sid
877670 bcftools FTBFS on armel, armhf and ppc64el patch
879886 libhts2: libhts2 needs to handle ABI changes
880268 pdb2pqr: FTBFS: SyntaxError: invalid syntax buster, sid
872222 python-biopython: broken symlinks: /usr/share/doc/python-biopython/{NEWS, DEPRECATED, CONTRIB} -> *.rst
880236 python-biopython: FTBFS: Test failures buster, sid
730515 cd-hit-est is cdhit-est in Debian [Why?]
871315 samtools: new version breaks python-pysam sid
877349 seqan2: please disable armel again
878933 seqan2 FTBFS on mips64el patch
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
Last update: Sun, 19 Nov 2017 18:32:42 -0000