Debian Med Project
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Summary
Bugs of task cloud
Total bugs: 58
Open bugs: 43
Fixed bugs: 15
Links to other tasks
Biology 144 (1426)
Phylogeny 9 (75)
Cloud 43 (507)
Medical data 1 (9)
Dental 0 (0)
Epidemiology 1 (9)
Imaging 190 (1158)
Laboratory 0 (0)
Oncology 2 (30)
Pharmacology 3 (27)
Physics 30 (288)
Practice 2 (9)
Psychology 8 (93)
Research 0 (0)
Statistics 2 (6)
Tools 35 (209)
Typesetting 64 (322)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 5 0
important 12 0
normal 19 0
minor 2 0
wishlist 5 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (507)*

Open bugs in dependent packages

5 serious, 12 important, 19 normal, 2 minor, 5 wishlist
747337 broken autopkgtest: missing dependency, not testing installed package, test failures upstream
732858 Add MariaDB as alternative dependency
803116 biomaj: references to non-existent license "CeCILL-A"
848497 src:biomaj: New upstream version available
866073 bioperl: autopkgtest regression
868073 bioperl-run: FTBFS: t/Bowtie.t failure buster, sid
864439 bowtie: FTBFS on mips64el - /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
864448 bowtie FTBFS on mips64el: /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
715587 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverage crashes with exit status 139 help
715588 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverageAps crashes with exit status 139 help
853375 disulfinder: ftbfs with GCC-7 buster, sid
682042 emboss-data: ships bulky taxonomy and gene ontology data
853396 fastx-toolkit: ftbfs with GCC-7 buster, sid
848335 Filo should be removed from Debian after Stretch release since it is unmaintained and can be replaced newcomer
860653 fitgcp: FTBFS on i386: build-dependency not installable: python-pysam buster, sid, stretch
759006 flexbar: FTBFS on hppa: Flexbar.h:258: undefined reference to `tbb::pipeline::run(unsigned int)'
853403 flexbar: ftbfs with GCC-7 buster, sid
814617 freecontact: adequate reports symbol-size-mismatch /usr/bin/freecontact => _ZN11xercesc_3_16XMLUni18fgXercesLoadSchemaE
853405 freecontact: ftbfs with GCC-7 buster, sid
644397 Provide runtime detection for CPU SIMD capabilities upstream
866137 htslib autopkgtest is broken in 1.4.1-2
863015 jellyfish: please make the output reproducible patch
865608 jellyfish shouldn't disable PIE patch
866438 last-align: depends on obsolete python-imaging (replace with python3-pil or python-pil) buster, sid
765285 mapsembler2: FTBFS on mips mipsel ppc sparc when 8 byte __sync* builtins are used
225651 ncbi-tools-x11: want Cn3D++
853609 perm: ftbfs with GCC-7 buster, sid
848332 src:poa: Please add autopkgtest newcomer
864558 poa FTCBFS: uses the build architecture compiler, runs tests despite DEB_BUILD_OPTIONS=nocheck patch
813250 prime-phylo: FTBFS on hppa: undefined boost references
853621 primer3: ftbfs with GCC-7 buster, sid
865191 probabel FTBFS on big endian: FAIL: 5
848333 src:proda: Please add autopkgtest newcomer
672407 python-biopython: duplicate mathml2.dtd
869597 python-biopython FTBFS: We need the Python library setuptools to be installed.
820308 qiime: many unsatisfiable dependencies
861281 rnahybrid: FTBFS on armel help
710225 staden-io-lib: library name should follow ABI version (not project version)
716373 [Mayhem] Bug report on t-coffee: t_coffee crashes with exit status 139 help
853677 t-coffee: ftbfs with GCC-7 buster, sid
853681 theseus: ftbfs with GCC-7 buster, sid
780816 tophat: contains and uses convience copy of samtools 0.1.18
806214 tree-puzzle: Package fails test suite

Open bugs in suggested packages

Done bugs

853859 bwa: Segmentation fault with specific data set
866330 cd-hit: please make the build reproducible patch
749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
774109 htslib: FTBFS on hppa
800469 htslib FTBFS on armhf, bus error. buster, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, patch, sid, stretch
865010 htslib: use -fPIC to fix FTBFS on s390x patch
865012 htslib FTBFS on i386: test_vcf_{api,sweep} failed patch, upstream
865654 phyml shouldn't disable PIE patch
866139 phyml uses -march=native
848329 src:prank: Please add autopkgtest newcomer
865251 Please update dependencies from latex-xcolor to tl-latex-recommended buster, sid
730515 cd-hit-est is cdhit-est in Debian [Why?]
865008 samtools FTBFS with htslib 1.4.1-2: error: conflicting types for 'errmod_t' buster, sid
862484 seqan2: please make the build reproducible patch
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Mon, 24 Jul 2017 18:42:41 -0000