Debian Med Project
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Summary
Bugs of task cloud
Total bugs: 51
Open bugs: 35
Fixed bugs: 16
Links to other tasks
Biology 102 (1265)
Phylogeny 6 (57)
Cloud 35 (441)
Medical data 1 (0)
Dental 2 (39)
Epidemiology 3 (48)
Imaging 219 (1259)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 0 (0)
Physics 26 (219)
Practice 4 (39)
Psychology 12 (152)
Research 0 (0)
Statistics 3 (7)
Tools 38 (249)
Typesetting 81 (601)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 7 0
important 2 0
normal 21 1
minor 3 0
wishlist 1 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (441)*

Open bugs in dependent packages

7 serious, 2 important, 21 normal, 3 minor, 1 wishlist
889147 abyss: PairedDBG_LoadAlgorithm test fails on sparc64 due to strict alignment violation patch, upstream
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' ftbfs, upstream
890116 bedtools FTBFS on 32bit: Tools failing: coverage intersect negativecontrol reldist shuffle split ftbfs
890117 bedtools FTBFS on big endian: Tools failing: bamtobed bamtofastq coverage genomecov groupby intersect jaccard map merge multicov negativecontrol ftbfs
715587 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverage crashes with exit status 139 help
715588 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverageAps crashes with exit status 139 help
891730 clonalframe: Please provide autopkgtest
904145 concavity FTCBFS: uses a C compiler for C++ sources patch, upstream
896487 datamash FTBFS on !x86/ia64: FAIL: tests/datamash-output-format ftbfs
682042 emboss-data: ships bulky taxonomy and gene ontology data
897109 fastqc: autopkgtest fails with new version while succeeded in the past; htsjdk.samtools.util.RuntimeIOException: java.io.IOException: Stream closed
814617 freecontact: adequate reports symbol-size-mismatch /usr/bin/freecontact => _ZN11xercesc_3_16XMLUni18fgXercesLoadSchemaE
890789 gff2aplot: Please provide autopkgtest newcomer
644397 Provide runtime detection for CPU SIMD capabilities upstream
905438 htslib: FTBFS on i386: 2 tests fail ftbfs
907819 jellyfish: Does not build on paths containing "-L" resulting in random FTBFS when built by sbuild ftbfs
890788 mipe: Please provide autopkgtest newcomer
891197 Please switch to pcre2
225651 ncbi-tools-x11: want Cn3D++
908353 ncbi-tools6 FTCBFS: uses the build architecture compiler patch, pending
903759 pdb2pqr: autopkgtest regression
880258 picard-tools: FTBFS: CollectRrbsMetricsTest.java:29: error: package org.testng does not exist buster, sid
905645 picard-tools: autopkgtest regression: Option 'ALIGNMENT_STATUS' is required.
895243 primer3: autopkgtest fails since 2.4.0-1 while it succeeded in the past
883860 python-biopython: SeqRecord broken on Debian packages when python-biopython-sql package is not installed upstream
820308 qiime: many unsatisfiable dependencies
890185 seqan2: FTBFS on ia64
892222 seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta upstream
892223 seqan2: FTBFS on sparc64: 39 tests failed out of 403 upstream
716373 [Mayhem] Bug report on t-coffee: t_coffee crashes with exit status 139 help
908459 theseus FTBFS with gcc 8 ftbfs
873866 tophat: Please add arm64
806214 tree-puzzle: Package fails test suite
890790 tree-puzzle: Please provide autopkgtest newcomer

Open bugs in suggested packages

1 normal
907898 gmap: autopkgtest regression

Done bugs

906337 bioperl-run: FTBFS in buster/sid (autobuilder hangs) ftbfs, help
906341 bowtie: FTBFS in buster/sid ftbfs
896931 fastqc: If the package libfindbin-libs-perl is not installed, fastqc exits with an error immediately.
873859 gasic: Please add arm64
902820 gmap: FTBFS on stretch/amd64 if CPU has SSE2 and nothing more ftbfs
908386 gmap: please limit to Architecture: amd64 ftbfs
887340 gromacs: FTBFS on x32: tests 2 and 13 time out upstream
749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. buster, ftbfs, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, ftbfs, patch, sid, stretch
908501 Does not depend on zlib1g-dev
908786 mothur-mpi contains the same binary as mothur
905706 libpicard-java-doc: ships /usr/share/javascript/jquery/jquery.min.js
730515 cd-hit-est is cdhit-est in Debian [Why?]
906509 sra-sdk: FTBFS in buster (unknown type name 'HttpProxy') ftbfs
902190 vcftools: CVE-2018-11099 CVE-2018-11129 CVE-2018-11130 fixed-upstream, security
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Wed, 19 Sep 2018 18:29:03 -0000