Debian Med Project
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Bugs of task cloud
Total bugs: 60
Open bugs: 34
Fixed bugs: 26
Links to other tasks
Biology 116 (1040)
Phylogeny 5 (30)
Cloud 34 (372)
Medical data 1 (0)
Dental 0 (0)
Epidemiology 1 (9)
Imaging 208 (1113)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 3 (27)
Physics 27 (213)
Practice 2 (0)
Psychology 8 (93)
Research 0 (0)
Statistics 2 (6)
Tools 36 (219)
Typesetting 88 (602)
critical 0 0
grave 0 0
serious 5 0
important 3 0
normal 19 0
minor 2 0
wishlist 5 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (372)*

Open bugs in dependent packages

5 serious, 3 important, 19 normal, 2 minor, 5 wishlist
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' upstream
747337 broken autopkgtest: missing dependency, not testing installed package, test failures upstream
732858 Add MariaDB as alternative dependency
803116 biomaj: references to non-existent license "CeCILL-A"
848497 src:biomaj: New upstream version available
866073 bioperl: autopkgtest regression
864439 bowtie: FTBFS on mips64el - /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
864448 bowtie FTBFS on mips64el: /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
715587 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverage crashes with exit status 139 help
715588 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverageAps crashes with exit status 139 help
874845 [clonalframe] Future Qt4 removal from Buster upstream
682042 emboss-data: ships bulky taxonomy and gene ontology data
860653 fitgcp: FTBFS on i386: build-dependency not installable: python-pysam buster, sid, stretch
759006 flexbar: FTBFS on hppa: Flexbar.h:258: undefined reference to `tbb::pipeline::run(unsigned int)'
814617 freecontact: adequate reports symbol-size-mismatch /usr/bin/freecontact => _ZN11xercesc_3_16XMLUni18fgXercesLoadSchemaE
873859 gasic: Please add arm64
871727 grinder: FTBFS when debhelper does not export PERL_USE_UNSAFE_INC
644397 Provide runtime detection for CPU SIMD capabilities upstream
866137 htslib autopkgtest is broken in 1.4.1-2
871314 htslib: new version break python-pysam sid
765285 mapsembler2: FTBFS on mips mipsel ppc sparc when 8 byte __sync* builtins are used
225651 ncbi-tools-x11: want Cn3D++
874155 FTBFS with Java 9: overrides core packages help, upstream
813250 prime-phylo: FTBFS on hppa: undefined boost references
672407 python-biopython: duplicate mathml2.dtd
872222 python-biopython: broken symlinks: /usr/share/doc/python-biopython/{NEWS, DEPRECATED, CONTRIB} -> *.rst
820308 qiime: many unsatisfiable dependencies
861281 rnahybrid: FTBFS on armel help
871315 samtools: new version breaks python-pysam sid
710225 staden-io-lib: library name should follow ABI version (not project version)
716373 [Mayhem] Bug report on t-coffee: t_coffee crashes with exit status 139 help
780816 tophat: contains and uses convience copy of samtools 0.1.18
873866 tophat: Please add arm64
806214 tree-puzzle: Package fails test suite

Open bugs in suggested packages

Done bugs

873745 bioperl: please Build-Depend on rename buster, sid
868073 bioperl-run: FTBFS: t/Bowtie.t failure buster, sid, upstream
871234 cufflinks: FTBFS with GCC-7: error: type/value mismatch at argument 1 in template parameter list for 'template<class _Tp> struct std::hash' buster, help, sid
853375 disulfinder: ftbfs with GCC-7 buster, sid
853396 fastx-toolkit: ftbfs with GCC-7 buster, sid
873429 flexbar builds with -march=native
749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. buster, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, patch, sid, stretch
863015 jellyfish: please make the output reproducible patch
865608 jellyfish shouldn't disable PIE patch
871697 jellyfish: Please add arm64
872262 jellyfish FTBFS with gcc 7 buster, patch, sid
873318 jellyfish does not actually disable parallel building
873994 FTBFS with Java 9 due to -source/-target only
853609 perm: ftbfs with GCC-7 buster, sid
848332 src:poa: Please add autopkgtest newcomer
864558 poa FTCBFS: uses the build architecture compiler, runs tests despite DEB_BUILD_OPTIONS=nocheck patch
853621 primer3: ftbfs with GCC-7 buster, sid
865191 probabel FTBFS on big endian: FAIL: 5 upstream
848333 src:proda: Please add autopkgtest newcomer
730515 cd-hit-est is cdhit-est in Debian [Why?]
874424 soapdenovo: please Build-Depend on rename buster, sid
874425 soapdenovo2: please Build-Depend on rename buster, sid
853677 t-coffee: ftbfs with GCC-7 buster, sid
853681 theseus: ftbfs with GCC-7 buster, sid
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
Last update: Wed, 20 Sep 2017 19:25:48 -0000