Summary

Bugs of task cloud

Total bugs: 56

Open bugs: 52

Fixed bugs: 4

Links to other tasks

Tasks overview

Biology 327 (1777)

Biology development 141 (660)

Next generation sequencing 8 (42)

Phylogeny 15 (90)

Cloud 52 (288)

Content management 0 (0)

Covid-19 171 (1310)

Medical data 1 (1)

Dental 1 (3)

Epidemiology 3 (60)

Hospital information systems 1 (9)

Imaging 231 (1060)

Imaging development 71 (555)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 28 (195)

Practice 7 (42)

Psychology 7 (39)

Rehabilitation 1 (0)

Research 0 (0)

Statistics 2 (4)

Tools 38 (241)

Typesetting 68 (556)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	2	0
important	3	0
normal	9	0
minor	34	0
wishlist	4	0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (288)^*

Open bugs in dependent packages

2 serious, 3 important, 9 normal, 34 minor, 4 wishlist

abyss (1) Homepage: https://github.com/bcgsc/abyss Vcs Debian Med Packaging Team
920282	abyss fails to build on hurd - googletest EXPECT_DEATH
anfo (1) Homepage: https://bioinf.eva.mpg.de/anfo/ Vcs Debian Med Packaging Team
1012893	anfo: ftbfs with GCC-12	help, bookworm, sid, ftbfs, trixie
aragorn (1) Homepage: http://mbio-serv2.mbioekol.lu.se/ARAGORN/ Vcs Debian Med Packaging Team
1043665	aragorn: Fails to build source after successful build	ftbfs, sid, trixie
arden (2) Homepage: http://sourceforge.net/projects/arden/ Vcs Debian Med Packaging Team
1035113	arden: please add autopkgtests (to add coverage for python3-numpy)
1036488	arden: please add autopkgtests (to add coverage for python3-matplotlib)
bamtools (2) Homepage: https://github.com/pezmaster31/bamtools/wiki Vcs Debian Med Packaging Team
865130	reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz'	upstream, ftbfs
1043881	bamtools: Fails to build source after successful build	ftbfs, sid, trixie
bedtools (1) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
1043957	bedtools: Fails to build source after successful build	ftbfs, sid, trixie
biosquid (2) Homepage: http://eddylab.org/software.html Vcs Debian-Med Packaging Team
1043996	biosquid: Fails to build source after successful build	ftbfs, sid, trixie
1049808	biosquid: Fails to build binary packages again after successful build	ftbfs, sid, trixie
bowtie (1) Homepage: http://bowtie-bio.sourceforge.net/ Vcs Debian Med Packaging Team
1043697	bowtie: Fails to build source after successful build	ftbfs, sid, trixie
cassiopee (1) Homepage: https://github.com/osallou/cassiopee-c Vcs Debian Med Packaging Team
1043792	cassiopee: Fails to build source after successful build	ftbfs, sid, trixie
clustalo (1) Homepage: http://www.clustal.org/omega/ Vcs Debian Med Packaging Team
1043849	clustalo: Fails to build source after successful build	ftbfs, sid, trixie
concavity (1) Homepage: https://compbio.cs.princeton.edu/concavity/ Vcs Debian Med Packaging Team
1043837	concavity: Fails to build source after successful build	ftbfs, sid, trixie
datamash (2) Homepage: https://savannah.gnu.org/projects/datamash/ Vcs Debian Science Maintainers
982869	datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors	ftbfs, upstream
1044977	datamash: Fails to build source after successful build	ftbfs, sid, trixie
dssp (1) Homepage: https://github.com/PDB-REDO/dssp Vcs Debian Med Packaging Team
1045047	dssp: Fails to build source after successful build	ftbfs, sid, trixie
emboss (2) Homepage: https://emboss.sourceforge.net Vcs Debian Med Packaging Team
682042	emboss-data: ships bulky taxonomy and gene ontology data
986043	emboss: uses media types that are not registered
fastlink (1) Homepage: https://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html Vcs Debian Med Packaging Team
1044987	fastlink: Fails to build source after successful build	ftbfs, sid, trixie
freecontact (1) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1049797	freecontact: Fails to build binary packages again after successful build	ftbfs, sid, trixie
genometools (1) Homepage: http://genometools.org Vcs Debian Med Packaging Team
1044467	genometools: Fails to build source after successful build	ftbfs, sid, trixie
gff2aplot (1) Homepage: https://genome.crg.es/software/gfftools/GFF2APLOT.html Vcs Debian Med Packaging Team
1044834	gff2aplot: Fails to build source after successful build	ftbfs, sid, trixie
gmap (1) Homepage: http://research-pub.gene.com/gmap Vcs Debian Med Packaging Team
1041451	gmap: FTBFS on all !amd64 archs	ftbfs, upstream
gromacs (2) Homepage: https://www.gromacs.org/ Vcs Debichem Team
644397	Provide runtime detection for CPU SIMD capabilities	upstream
983942	gromacs: ftbfs with -march=x86-64-v3
hisat2 (1) Homepage: https://daehwankimlab.github.io/hisat2/ Vcs Debian Med Packaging Team
1048028	hisat2: Fails to build source after successful build	ftbfs, sid, trixie
infernal (1) Homepage: http://eddylab.org/infernal/ Vcs Debian Med Packaging Team
1045517	infernal: Fails to build source after successful build	ftbfs, sid, trixie
jellyfish (2) Homepage: https://github.com/gmarcais/Jellyfish Vcs Debian Med Packaging Team
1021557	jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs)	upstream
1046793	jellyfish: Fails to build source after successful build	ftbfs, sid, trixie
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396	last-align: Fails to build source after successful build	ftbfs, sid, trixie
macs (1) Homepage: https://github.com/taoliu/MACS/ Vcs Debian Med Packaging Team
1047612	macs: Fails to build source after successful build	ftbfs, sid, trixie
melting (1) Homepage: https://www.ebi.ac.uk/compneur-srv/melting/ Vcs Debian Med Packaging Team
1048833	melting: Fails to build source after successful build	ftbfs, sid, trixie
mira (2) Homepage: https://sourceforge.net/p/mira-assembler/wiki/Home/ Vcs Debian Med Packaging Team
1045311	mira: Fails to build source after successful build	ftbfs, sid, trixie
1049789	mira: Fails to build binary packages again after successful build	ftbfs, sid, trixie
mrbayes (2) Homepage: http://mrbayes.csit.fsu.edu/ Vcs Debian Med Packaging Team
1045400	mrbayes: Fails to build source after successful build	ftbfs, sid, trixie
1049739	mrbayes: Fails to build binary packages again after successful build	ftbfs, sid, trixie
muscle3 (1) Homepage: https://www.drive5.com/muscle/ Vcs Debian Med Packaging Team
1048044	muscle3: Fails to build source after successful build	ftbfs, sid, trixie
ncbi-blast+ (4) Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Vcs Debian Med Packaging Team
891197	Please switch to pcre2	sid, trixie
956850	ncbi-blast+: Please provide /usr/bin/legacy_blast.pl
984871	ncbi-blast+: Missing headers for shared libraries
1010110	ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'	wontfix
ncbi-tools6 (1) Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Vcs Debian Med Packaging Team
225651	ncbi-tools-x11: want Cn3D++
plink2 (1) Homepage: https://www.cog-genomics.org/plink/2.0/ Vcs Debian Med Packaging Team
1048822	plink2: Fails to build source after successful build	ftbfs, sid, trixie
primer3 (1) Homepage: http://primer3.sourceforge.net Vcs Debian Med Packaging Team
1045454	primer3: Fails to build source after successful build	ftbfs, sid, trixie
proda (1) Homepage: http://proda.stanford.edu/ Vcs Debian Med Packaging Team
1048254	proda: Fails to build source after successful build	ftbfs, sid, trixie
seqan2 (2) Homepage: https://www.seqan.de/ Vcs Debian Med Packaging Team
917851	seqan2 2.4.0+dfsg-9: FTBFS, alignment problem	ftbfs
1047218	seqan2: Fails to build source after successful build	ftbfs, sid, trixie
smalt (1) Homepage: https://www.sanger.ac.uk/science/tools/smalt-0 Vcs Debian Med Packaging Team
1047681	smalt: Fails to build source after successful build	ftbfs, sid, trixie
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1040391	sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
t-coffee (1) Homepage: https://www.tcoffee.org/Projects/tcoffee/index.html Vcs Debian Med Packaging Team
956848	t-coffee: should use "example" blastpgp.pl
tree-puzzle (1) Homepage: http://www.tree-puzzle.de Vcs Debian Med Packaging Team
1049170	tree-puzzle: Fails to build source after successful build	ftbfs, sid, trixie

Open bugs in suggested packages

Done bugs

biomaj3-cli (1) Homepage: https://github.com/genouest/biomaj-cli Vcs Debian Med Packaging Team
1043871	biomaj3-cli: Fails to build source after successful build	ftbfs, sid, trixie
gmap (1) Homepage: http://research-pub.gene.com/gmap Vcs Debian Med Packaging Team
1045094	src:gmap: fails to migrate to testing for too long: FTBFS on !amd64	sid, trixie
parsinsert (2) Homepage: http://sourceforge.net/projects/parsinsert/ Vcs Debian Med Packaging Team
964082	parsinsert fails it's tests when built with -O2	bookworm, trixie, sid, bullseye
1037816	parsinsert: ftbfs with GCC-13	ftbfs, trixie, sid

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0