Debian Med Project
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Summary
Bugs of task cloud
Total bugs: 48
Open bugs: 35
Fixed bugs: 13
Links to other tasks
Biology 105 (1282)
Phylogeny 8 (96)
Cloud 35 (402)
Medical data 1 (0)
Dental 1 (9)
Epidemiology 1 (30)
Imaging 200 (1074)
Laboratory 0 (0)
Oncology 0 (0)
Pharmacology 0 (0)
Physics 28 (207)
Practice 3 (9)
Psychology 10 (140)
Research 0 (0)
Statistics 2 (4)
Tools 36 (245)
Typesetting 75 (583)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 6 0
important 3 0
normal 17 0
minor 8 0
wishlist 1 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (402)*

Open bugs in dependent packages

6 serious, 3 important, 17 normal, 8 minor, 1 wishlist
889147 abyss: PairedDBG_LoadAlgorithm test fails on sparc64 due to strict alignment violation patch, upstream
890785 autodock-vina: Please provide autopkgtest newcomer
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' upstream
890116 bedtools FTBFS on 32bit: Tools failing: coverage intersect negativecontrol reldist shuffle split
890117 bedtools FTBFS on big endian: Tools failing: bamtobed bamtofastq coverage genomecov groupby intersect jaccard map merge multicov negativecontrol
894781 bedtools: autopkgtest fails while it succeeded in the past
715587 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverage crashes with exit status 139 help
715588 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverageAps crashes with exit status 139 help
891730 clonalframe: Please provide autopkgtest
896487 datamash FTBFS on !x86/ia64: FAIL: tests/datamash-output-format
682042 emboss-data: ships bulky taxonomy and gene ontology data
890787 fastdnaml: Please provide autopkgtest
814617 freecontact: adequate reports symbol-size-mismatch /usr/bin/freecontact => _ZN11xercesc_3_16XMLUni18fgXercesLoadSchemaE
890789 gff2aplot: Please provide autopkgtest newcomer
644397 Provide runtime detection for CPU SIMD capabilities upstream
887340 gromacs: FTBFS on x32: tests 2 and 13 time out upstream
896194 gromacs FTBFS: GpuUtilsUnitTests (Timeout)
890788 mipe: Please provide autopkgtest newcomer
891197 Please switch to pcre2
225651 ncbi-tools-x11: want Cn3D++
879619 ncbi-tools6: Please provide autopkgtest
880258 picard-tools: FTBFS: CollectRrbsMetricsTest.java:29: error: package org.testng does not exist buster, sid
890993 primer3 FTBFS on big endian: test failure
895243 primer3: autopkgtest fails since 2.4.0-1 while it succeeded in the past
883860 python-biopython: SeqRecord broken on Debian packages when python-biopython-sql package is not installed upstream
820308 qiime: many unsatisfiable dependencies
890784 readseq: Please provide autopkgtest newcomer
890185 seqan2: FTBFS on ia64
892222 seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta upstream
892223 seqan2: FTBFS on sparc64: 39 tests failed out of 403 upstream
879620 sra-sdk: Please provide autopkgtest
716373 [Mayhem] Bug report on t-coffee: t_coffee crashes with exit status 139 help
873866 tophat: Please add arm64
806214 tree-puzzle: Package fails test suite
890790 tree-puzzle: Please provide autopkgtest newcomer

Open bugs in suggested packages

Done bugs

894886 libbamtools-dev needs Breaks+Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~)
891335 clonalframe: FTBFS with glibc 2.27: error: 'UNDERFLOW' was not declared in this scope help, patch, upstream
873859 gasic: Please add arm64
749367 htslib FTBFS on testing for mips/mipsel buster, moreinfo, patch, sid, stretch
800469 htslib FTBFS on armhf, bus error. buster, patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error buster, patch, sid, stretch
889506 last-align: Please make build compatible with -Wl,--as-needed patch
879622 macs: Please provide autopkgtest
895299 mustang FTCBFS: uses a non-standard variable for the c++ compiler patch, upstream
894329 picard-tools FTBFS with openjdk-9
894473 prodigal FTBFS on armel/armhf: Build killed with signal TERM after 150 minutes of inactivity buster, patch, sid
672407 python-biopython: duplicate mathml2.dtd
730515 cd-hit-est is cdhit-est in Debian [Why?]
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Sat, 21 Apr 2018 18:31:21 -0000