Debian Med Project
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Summary
Bugs of task cloud
Total bugs: 48
Open bugs: 40
Fixed bugs: 8
Links to other tasks
Biology 119 (849)
Phylogeny 8 (66)
Cloud 40 (324)
Medical data 1 (9)
Dental 0 (0)
Epidemiology 0 (0)
Imaging 178 (940)
Laboratory 0 (0)
Oncology 1 (15)
Pharmacology 1 (9)
Physics 31 (273)
Practice 2 (9)
Psychology 6 (63)
Research 0 (0)
Statistics 2 (6)
Tools 34 (204)
Typesetting 95 (523)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 1 0
important 3 0
normal 27 0
minor 2 0
wishlist 7 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (324)*

Open bugs in dependent packages

1 serious, 3 important, 27 normal, 2 minor, 7 wishlist
747337 broken autopkgtest: missing dependency, not testing installed package, test failures upstream
732858 Add MariaDB as alternative dependency
803116 biomaj: references to non-existent license "CeCILL-A"
848497 src:biomaj: New upstream version available
853859 bwa: Segmentation fault with specific data set
715587 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverage crashes with exit status 139 help
715588 [Mayhem] Bug report on cain-solvers: HomogeneousHistogramsAverageAps crashes with exit status 139 help
856942 circos: broken symlinks: /usr/share/doc/circos/* -> /tools/*/*
853375 disulfinder: ftbfs with GCC-7 buster, sid
682042 emboss-data: ships bulky taxonomy and gene ontology data
853396 fastx-toolkit: ftbfs with GCC-7 buster, sid
848335 Filo should be removed from Debian after Stretch release since it is unmaintained and can be replaced newcomer
860653 fitgcp: FTBFS on i386: build-dependency not installable: python-pysam sid, stretch
759006 flexbar: FTBFS on hppa: Flexbar.h:258: undefined reference to `tbb::pipeline::run(unsigned int)'
853403 flexbar: ftbfs with GCC-7 buster, sid
814617 freecontact: adequate reports symbol-size-mismatch /usr/bin/freecontact => _ZN11xercesc_3_16XMLUni18fgXercesLoadSchemaE
853405 freecontact: ftbfs with GCC-7 buster, sid
644397 Provide runtime detection for CPU SIMD capabilities upstream
749367 htslib FTBFS on testing for mips/mipsel moreinfo, patch, sid, stretch
774109 htslib: FTBFS on hppa
800469 htslib FTBFS on armhf, bus error. patch, sid, stretch
849667 htslib: FTBFS on armhf: [test] Bus error patch, sid, stretch
863015 jellyfish: please make the output reproducible patch
765285 mapsembler2: FTBFS on mips mipsel ppc sparc when 8 byte __sync* builtins are used
225651 ncbi-tools-x11: want Cn3D++
853609 perm: ftbfs with GCC-7 buster, sid
848332 src:poa: Please add autopkgtest newcomer
813250 prime-phylo: FTBFS on hppa: undefined boost references
853621 primer3: ftbfs with GCC-7 buster, sid
848333 src:proda: Please add autopkgtest newcomer
672407 python-biopython: duplicate mathml2.dtd
820308 qiime: many unsatisfiable dependencies
861281 rnahybrid: FTBFS on armel help
862484 seqan2: please make the build reproducible patch
710225 staden-io-lib: library name should follow ABI version (not project version)
716373 [Mayhem] Bug report on t-coffee: t_coffee crashes with exit status 139 help
853677 t-coffee: ftbfs with GCC-7 buster, sid
853681 theseus: ftbfs with GCC-7 buster, sid
780816 tophat: contains and uses convience copy of samtools 0.1.18
806214 tree-puzzle: Package fails test suite

Open bugs in suggested packages

Done bugs

852743 dialign FTCBFS: uses the build architecture compiler patch
836230 FTBFS in a low memory machine with poor error message
853211 phyml: Fails to use mpi
853737 phyml: Beagle library causes trouble on machines without proper graphics hardware
853738 phyml: MPI version uses different number of bootstrap steps breaking applications like seaview
848334 src:picard-tools: Please add autopkgtest newcomer
848329 src:prank: Please add autopkgtest newcomer
730515 cd-hit-est is cdhit-est in Debian [Why?]
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Mon, 29 May 2017 06:20:20 -0000