Debian Med Project
Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Salsa page.
Summary
Bugs of task bio-phylogeny
Total bugs: 16
Open bugs: 15
Fixed bugs: 1
Links to other tasks
Tasks overview
Biology 272 (2361)
Biology development 144 (1497)
Phylogeny 15 (156)
Cloud 46 (423)
Covid-19 202 (2153)
Medical data 0 (0)
Dental 3 (21)
Epidemiology 32 (414)
Imaging 220 (983)
Laboratory 1 (15)
Oncology 1 (3)
Pharmacology 1 (15)
Physics 27 (213)
Practice 7 (54)
Psychology 16 (144)
Research 0 (0)
Statistics 9 (21)
Tools 36 (230)
Typesetting 75 (659)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 3 0
important 1 0
normal 5 0
minor 2 0
wishlist 4 0

Summary bugs page of task Phylogeny

Immediately looking into bugs of the dependencies of this task is advised (156)*

Open bugs in dependent packages

3 serious, 1 important, 5 normal, 2 minor, 4 wishlist
altree (1) Homepage: https://gitlab.inria.fr/NGS/ALTree Vcs Debian Med Packaging Team
1067631 src:altree: autopkgtest timeouts on armel, armhf and ppc64el confirmed, help
beast-mcmc (2) Homepage: http://beast.bio.ed.ac.uk/ Vcs Debian Med Packaging Team
1025424 beast-mcmc: please enable autopkgtest help
1107598 beast-mcmc: please honor CFLAGS
gmap (1) Homepage: http://research-pub.gene.com/gmap Vcs Debian Med Packaging Team
1107772 gmap inlining failed in call to ‘always_inline’ ‘_mm_alignr_epi8’: target specific option mismatch confirmed, ftbfs
hmmer (1) Homepage: http://hmmer.org/ Vcs Debian Med Packaging Team
1120150 hmmer: Ship easel miniapps instead of easel source code.
jmodeltest (2) Homepage: https://github.com//ddarriba/jmodeltest2 Vcs Debian Med Packaging Team
1095078 jmodeltest: reduce the permissions on /var/log/jmodeltest
1099239 jmodeltest: FTBFS: rc/main/java/es/uvigo/darwin/jmodeltest/io/HtmlReporter.java:38: error: cannot find symbol forky, ftbfs, sid, trixie
muscle (1) Homepage: https://www.drive5.com/muscle/ Vcs Debian Med Packaging Team
1105460 muscle: FTBFS with make --shuffle=reverse: Fatal error: can't create Linux/usage.o: No such file or directory forky, ftbfs, sid, trixie
phyml (1) Homepage: http://www.atgc-montpellier.fr/phyml Vcs Debian Med Packaging Team
1106652 phyml FTCBFS: cross compilation support reverted patch, upstream
pplacer (2) Homepage: https://github.com/matsen/pplacer Vcs Debian Med Packaging Team
1074546 FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) ftbfs
1093109 pplacer: FTBFS with OCaml 5.3.0 (error in C stubs) ftbfs
t-coffee (1) Homepage: https://www.tcoffee.org/Projects/tcoffee/index.html Vcs Debian Med Packaging Team
956848 t-coffee: should use "example" blastpgp.pl
tree-puzzle (2) Homepage: http://www.tree-puzzle.de Vcs Debian Med Packaging Team
1106704 tree-puzzle FTCBFS: uses mpicc patch, upstream
1108273 tree-puzzle: please make the build reproducible patch
treeviewx (1) Homepage: https://github.com/rdmpage/treeviewx Vcs Debian Med Packaging Team
846481 src:treeviewx: Please remove statically linked code copy of libncl

Open bugs in suggested packages

Done bugs

veryfasttree (1) Homepage: https://github.com/citiususc/veryfasttree Vcs Debian Med Packaging Team
1118378 veryfasttree: FTBFS with robin-map 1.4.0
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Tue, 18 Nov 2025 04:06:59 -0000