Summary

Bugs of task bio-phylogeny

Total bugs: 16

Open bugs: 16

Fixed bugs: 0

Links to other tasks

Tasks overview

Biology 298 (2661)

Biology development 137 (1155)

Next generation sequencing 8 (44)

Phylogeny 16 (198)

Cloud 70 (723)

Content management 0 (0)

Covid-19 195 (1857)

Medical data 0 (0)

Dental 2 (12)

Epidemiology 18 (204)

Hospital information systems 3 (33)

Imaging 205 (852)

Imaging development 79 (487)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 24 (159)

Practice 6 (45)

Psychology 11 (133)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 4 (16)

Tools 35 (227)

Typesetting 81 (632)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	3	0
important	5	0
normal	3	0
minor	2	0
wishlist	3	0

Summary bugs page of task Phylogeny

Immediately looking into bugs of the dependencies of this task is advised (198)^*

Open bugs in dependent packages

3 serious, 5 important, 3 normal, 2 minor, 3 wishlist

altree (3) Homepage: https://gitlab.inria.fr/NGS/ALTree Vcs Debian Med Packaging Team
1067631	src:altree: autopkgtest timeouts on armel, armhf and ppc64el
1096300	altree: ftbfs with GCC-15	forky, sid
1102872	altree: add perl-xs-dev to Build-Depends
beast-mcmc (2) Homepage: http://beast.bio.ed.ac.uk/ Vcs Debian Med Packaging Team
1025424	beast-mcmc: please enable autopkgtest	help
1103836	Depends on an EOLed version of libitext
hmmer (1) Homepage: http://hmmer.org/ Vcs Debian Med Packaging Team
1103312	hmmer: FTBFS with the nocheck build profile	ftbfs, sid, trixie
iqtree (1) Homepage: http://www.cibiv.at/software/iqtree/ Vcs Debian Med Packaging Team
1096850	iqtree: ftbfs with GCC-15	forky, sid
jmodeltest (2) Homepage: https://github.com//ddarriba/jmodeltest2 Vcs Debian Med Packaging Team
1095078	jmodeltest: reduce the permissions on /var/log/jmodeltest
1099239	jmodeltest: FTBFS: rc/main/java/es/uvigo/darwin/jmodeltest/io/HtmlReporter.java:38: error: cannot find symbol	ftbfs, sid, trixie
muscle (1) Homepage: https://www.drive5.com/muscle/ Vcs Debian Med Packaging Team
1105460	muscle: FTBFS with make --shuffle=reverse: Fatal error: can't create Linux/usage.o: No such file or directory	ftbfs, sid, trixie
phyml (1) Homepage: http://www.atgc-montpellier.fr/phyml Vcs Debian Med Packaging Team
1106652	phyml FTCBFS: cross compilation support reverted	patch, upstream
pplacer (2) Homepage: https://github.com/matsen/pplacer Vcs Debian Med Packaging Team
1074546	FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix)	ftbfs
1093109	pplacer: FTBFS with OCaml 5.3.0 (error in C stubs)	ftbfs
t-coffee (1) Homepage: https://www.tcoffee.org/Projects/tcoffee/index.html Vcs Debian Med Packaging Team
956848	t-coffee: should use "example" blastpgp.pl
tree-puzzle (1) Homepage: http://www.tree-puzzle.de Vcs Debian Med Packaging Team
1106704	tree-puzzle FTCBFS: uses mpicc	patch, upstream
treeviewx (1) Homepage: https://github.com/rdmpage/treeviewx Vcs Debian Med Packaging Team
846481	src:treeviewx: Please remove statically linked code copy of libncl

Open bugs in suggested packages

Done bugs

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0