Summary

Bugs of task bio-phylogeny

Total bugs: 15

Open bugs: 11

Fixed bugs: 4

Links to other tasks

Tasks overview

Biology 230 (1956)

Biology development 136 (1486)

Next generation sequencing 3 (9)

Phylogeny 11 (108)

Cloud 38 (378)

Content management 0 (0)

Covid-19 204 (2224)

Medical data 0 (0)

Dental 3 (21)

Epidemiology 29 (393)

Hospital information systems 0 (0)

Imaging 217 (945)

Imaging development 83 (603)

Laboratory 1 (30)

Oncology 0 (0)

Pharmacology 1 (15)

Physics 27 (240)

Practice 6 (45)

Psychology 17 (154)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 8 (12)

Tools 36 (240)

Typesetting 72 (626)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	2	0
important	1	0
normal	3	0
minor	2	0
wishlist	3	0

Summary bugs page of task Phylogeny

Immediately looking into bugs of the dependencies of this task is advised (108)^*

Open bugs in dependent packages

2 serious, 1 important, 3 normal, 2 minor, 3 wishlist

altree (1) Homepage: https://gitlab.inria.fr/NGS/ALTree Vcs Debian Med Packaging Team
1067631	src:altree: autopkgtest timeouts on armel, armhf and ppc64el	confirmed, help
beast-mcmc (2) Homepage: http://beast.bio.ed.ac.uk/ Vcs Debian Med Packaging Team
1025424	beast-mcmc: please enable autopkgtest	help
1107598	beast-mcmc: please honor CFLAGS
gmap (1) Homepage: http://research-pub.gene.com/gmap Vcs Debian Med Packaging Team
1107772	gmap inlining failed in call to âalways_inlineâ â_mm_alignr_epi8â: target specific option mismatch	confirmed, ftbfs
hmmer (1) Homepage: http://hmmer.org/ Vcs Debian Med Packaging Team
1120150	hmmer: Ship easel miniapps instead of easel source code.
jmodeltest (1) Homepage: https://github.com//ddarriba/jmodeltest2 Vcs Debian Med Packaging Team
1095078	jmodeltest: reduce the permissions on /var/log/jmodeltest
muscle (1) Homepage: https://www.drive5.com/muscle/ Vcs Debian Med Packaging Team
1105460	muscle: FTBFS with make --shuffle=reverse: Fatal error: can't create Linux/usage.o: No such file or directory	forky, ftbfs, sid, trixie
pplacer (2) Homepage: https://github.com/matsen/pplacer Vcs Debian Med Packaging Team
1074546	FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix)	ftbfs
1093109	pplacer: FTBFS with OCaml 5.3.0 (error in C stubs)	ftbfs
t-coffee (1) Homepage: https://www.tcoffee.org/Projects/tcoffee/index.html Vcs Debian Med Packaging Team
956848	t-coffee: should use "example" blastpgp.pl
treeviewx (1) Homepage: https://github.com/rdmpage/treeviewx Vcs Debian Med Packaging Team
846481	src:treeviewx: Please remove statically linked code copy of libncl

Open bugs in suggested packages

Done bugs

jmodeltest (1) Homepage: https://github.com//ddarriba/jmodeltest2 Vcs Debian Med Packaging Team
1099239	jmodeltest: FTBFS: rc/main/java/es/uvigo/darwin/jmodeltest/io/HtmlReporter.java:38: error: cannot find symbol	forky, ftbfs, sid, trixie
phyml (1) Homepage: http://www.atgc-montpellier.fr/phyml Vcs Debian Med Packaging Team
1106652	phyml FTCBFS: cross compilation support reverted	patch, upstream
tree-puzzle (2) Homepage: http://www.tree-puzzle.de Vcs Debian Med Packaging Team
1106704	tree-puzzle FTCBFS: uses mpicc	patch, upstream
1108273	tree-puzzle: please make the build reproducible	patch

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0