Summary
Bugs of task
covid-19
Total bugs:
153
Open bugs:
125
Fixed bugs:
28
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
1 |
0 |
| serious |
6 |
3 |
| important |
25 |
2 |
| normal |
56 |
1 |
| minor |
13 |
0 |
| wishlist |
18 |
0 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1171)*
Open bugs in dependent packages
1 grave, 6 serious, 25 important, 56 normal, 13 minor, 18 wishlist
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| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
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|
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| 1027731 |
aeskulap: Depends on deprecated libglademm2.4 |
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|
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| 870060 |
bcftools FTBFS on big endian: 107 tests failed |
ftbfs, upstream |
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| 1010653 |
busco: add autopkgtest to check integration with hmmer and prodigal |
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|
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| 1030713 |
cwltool: Installs the text of 'Moby-Dick' under /usr/lib/python3/dist-packages |
patch |
| 1030714 |
cwltool: please make the build reproducible |
patch |
|
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| 935879 |
Update to use CharLS 2.0 |
upstream |
| 988644 |
Defined Term: ISO 2022 IR 87 is not supported |
confirmed, upstream |
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| 1030360 |
diamond-aligner FTBFS on !amd64 |
ftbfs |
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| 995966 |
epigrass: epirunner and epidash fail to run due to missing dash modules |
pending |
| 998265 |
epigrass: autopkgtest regression: The 'panel' distribution was not found |
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|
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| 731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
patch, upstream |
| 749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
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| 826048 |
Faulty CMake file impairs compiling against GDCM |
moreinfo, wontfix |
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| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 983942 |
gromacs: ftbfs with -march=x86-64-v3 |
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|
|
| 1006686 |
libchipcard-dev: undefined variable in libchipcard-client.pc |
fixed-upstream, patch, upstream |
| 1006687 |
libchipcard6: card.c leaks memory |
patch, upstream |
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| 934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
fixed-upstream, ftbfs, help, upstream |
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| 996981 |
multiqc: Link to jquery missing |
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| 891197 |
Please switch to pcre2 |
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| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
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| 984871 |
ncbi-blast+: Missing headers for shared libraries |
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| 1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
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| 1017871 |
shiny-server: server-function don't run |
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|
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| 1001387 |
Wishlist: Package Stone of Orthanc Webviewer |
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|
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| 1009156 |
pplacer: Add autopkgtest |
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| 1024889 |
pplacer: build-depedends on dropped package. |
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| 1018448 |
pynn: build-depends on python3-nose or uses it for autopkgtest |
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| 1027386 |
pysam -- no definition for bam_dup1 |
confirmed |
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| 983517 |
pytorch: Build documentation |
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| 1024903 |
pytorch: CVE-2022-45907: torch.jit.annotations.parse_type_line prone to command injection |
security, upstream |
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| 1028713 |
salmon call causing pigx-rnaseq to infinitely loop |
bookworm, confirmed, ftbfs, sid |
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| 1029202 |
snippy: Error when using snpeff 5.1 |
upstream |
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| 976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid |
| 1015668 |
spades: ftbfs with LTO (link time optimization) enabled |
bookworm, sid |
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| 1005713 |
tensorflow FTBFS; bazel still tries to download during build. |
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| 170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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| 181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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| 184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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| 184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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| 189616 |
jadetex: Japanese JadeTeX |
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| 234884 |
Cannot generate PDF when callouts are used |
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| 310148 |
xmlto: pdf output fails with LaTeX errors |
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| 345637 |
xmltex: behaves as if --force-confold had been given |
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| 427443 |
provide a documentation index (like tetex had) |
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| 444084 |
tex4ht: you-on gets extra space |
moreinfo |
| 450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
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| 468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
| 536380 |
HTML mode is spewing some XML |
wontfix |
| 536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
| 537284 |
Ligature ï¬ becoming ø in avant garde |
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| 554637 |
tex4ht: Leaves intermediate files |
wontfix |
| 554998 |
Glitches when using hyperref and math mode |
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| 554999 |
tex4ht: mk4ht should fail when it encounters errors |
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| 572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
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| 596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
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| 604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
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| 615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
fixed-upstream, patch, pending, upstream |
| 635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
| 659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
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| 675869 |
make PDF smaller with version1.4 |
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| 683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
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| 744309 |
FTBFS Please rebuilt from source flash file |
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| 764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
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| 767872 |
tex4ht: htlatex fails without non-zero exit status |
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| 772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
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| 774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
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| 801505 |
texlive-latex-extra: complaint about weong file in dpkg trigger |
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| 807211 |
texlive-latex-extra: bug in cool.sty; dependency on texlive-fonts-extra |
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| 862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
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| 866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
| 877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
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| 877770 |
Q: Why -doc package depends on tex? |
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| 899413 |
texlive-latex-extra: beamerthemeAachen.sty is missing package tangocolors |
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| 916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
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| 917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
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| 929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
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| 930850 |
texlive-latex-extra: Update listings macro separator |
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| 941823 |
tabu: cell background colours broken |
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| 953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
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| 958562 |
texlive-extra-utils: missing man page for pdfcrop |
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| 974724 |
no useful documentation of pdfjam commands |
wontfix |
| 992269 |
texlive-bibtex-extra: Missing beebe bst stiles like abstract.bst |
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| 997024 |
[greek]babel + cleveref + pagenumbering + label = â |
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| 1008808 |
texlive-games: [chess.sty] Incorrect usage of babel breaks package |
wontfix |
| 1011759 |
texlive-extra-utils: Script pdfjoin has vanished |
wontfix |
| 1019236 |
Why does mere inclusion of pstricks change A4 to letter? |
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| 1021166 |
texlive-fonts-extra: sourceserifpro doesn't work with xeLaTeX |
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| 1023586 |
texlive-extra-utils: pythontex won't find python (when on python3) |
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| 1026789 |
Broken vf files in package? |
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| 1029325 |
texlive-latex-extra: adequate reports broken-symlink |
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| 980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
| 1018656 |
umap-learn: build-depends on python3-nose or uses it for autopkgtest |
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| 976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, ftbfs, sid |
| 987184 |
vg -- excessive variants built, and not tested |
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| 1013061 |
vg: ftbfs with GCC-12 |
bookworm, ftbfs, sid |
| 1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
bookworm, sid |
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| 348845 |
please provide a male character as well |
upstream |
| 359991 |
Please add 'daemon' mode |
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| 371826 |
new exercises |
upstream |
| 388570 |
option for less disk intensity |
upstream |
| 533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
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| 545585 |
workrave: Cant resume after unlocking screen |
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| 598402 |
workrave: Should count suspend time as pauses |
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| 632232 |
workrave: Changing sound options has no effect |
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| 695344 |
Installs gobject-introspection / library files into system wide paths |
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| 783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
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| 789044 |
workrave: lock was blocked by another application |
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| 804170 |
workrave: Workrave resets system volume levels |
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| 829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
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| 843563 |
Workrave applet unusable |
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| 853933 |
workrave: segfault when trying to start under wayland |
upstream |
| 911054 |
workrave: desktop instability in multimonitor (3) setup |
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| 921765 |
workrave: occasionally runs into false activity detection |
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| 943477 |
workrave: multiple overlaying popups in multimonitor setup |
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| 967815 |
workrave: depends on deprecated GTK 2 |
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| 980873 |
workrave: Break warning window grabs keyboard focus on Wayland |
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| 988064 |
workrave: applet does not display timer after screen lock |
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Open bugs in suggested packages
3 serious, 2 important, 1 normal
|
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| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
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| 1018312 |
bcbio: build-depends on python3-nose or uses it for autopkgtest |
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| 1002223 |
simde: fails test with clang: error: cd clang_test && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 meson test returned exit code 6 |
bookworm, experimental, ftbfs, sid, upstream |
| 1021247 |
simde: FTBFS on i386 |
ftbfs |
| 1030577 |
simde: autopkgtest regressions on i386 and ppc64el |
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|
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| 1025746 |
vienna-rna: FTBFS: Package 'RNAlib2', required by 'virtual:world', not found |
bookworm, ftbfs, sid |
Done bugs
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| 1028449 |
changeo fails with python3.11: "invalid mode rU" |
patch |
|
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| 989108 |
dcmtk-doc: broken symlink: /usr/share/doc/dcmtk-doc/html/jquery.js -> ../../../javascript/jquery/jquery.js |
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| 990134 |
dcmtk: legacy conffiles leftover |
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| 990135 |
dcmtk: leftovers after package purge |
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| 1027828 |
macromoleculebuilder: FTBFS in bullseye (a2x: ERROR: "xsltproc" [...] returned non-zero exit status 5) |
ftbfs |
|
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| 1028856 |
paleomix: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13 |
bookworm, ftbfs, sid |
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| 1028812 |
pynn: FTBFS: AttributeError: module 'numpy' has no attribute 'int' |
bookworm, ftbfs, sid |
|
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| 1030512 |
python3-anndata needs a source upload to fix the missing python3-h5py dependency |
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| 979625 |
autopkgtest: ModuleNotFoundError (ipytree) and AssertionError |
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| 1027251 |
python-cooler: autopkgtest fail with numpy/1.24.1 |
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| 1028108 |
python-cooler: binary-any FTBFS |
ftbfs |
| 1029694 |
python-cooler: tests fail with scipy 1.10 |
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|
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| 1018551 |
python-pbcore: build-depends on python3-nose or uses it for autopkgtest |
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| 1027211 |
python-pbcore: autopkgtest fail with numpy/1.24.1 |
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| 1027335 |
pairtools -- current repo in salsa FTBFS |
confirmed |
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| 1018577 |
python-seqcluster: build-depends on python3-nose or uses it for autopkgtest |
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| 994423 |
pytorch: Baseline violation on armhf |
bookworm, bullseye, ftbfs, sid |
| 997931 |
libtorch-dev: Caffe2Targets.cmake is broken |
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| 1027851 |
pytorch FTBFS with Python 3.11 as default version |
bookworm, ftbfs, help, sid |
| 1028749 |
tpot: FTBFS: unsatisfiable build-dependency: python3 (< 3.11) but 3.11.1-1 is to be installed |
bookworm, ftbfs, help, sid |
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| 1029580 |
sepp fails with python3.11: "invalid mode rU" |
patch |
|
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| 1023687 |
simde build depends on gcc-10 that should not be in bookworm |
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|
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| 1019317 |
snakemake: HTML dashboard (--gui) is broken due to use of local jquery/bootstrap |
patch |
|
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| 1026576 |
spaln: FTBFS: dbs.cc:568:54: error: cannot convert âgzFileâ {aka âgzFile_s*â} to âFILE*â |
bookworm, ftbfs, sid, upstream |
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|
| 1026554 |
toil: FTBFS: ModuleNotFoundError: No module named 'cwltool.expression' |
bookworm, ftbfs, sid |
| 1030558 |
toil build-depends on missing python3-xdist |
ftbfs |
|
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| 955965 |
workrave: Depends on deprecated dbus-glib |
bookworm, bullseye, sid |
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| 1025249 |
wtdbg2: flaky autopkgtest: Segmentation fault |
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