Summary
Bugs of task
covid-19
Total bugs:
155
Open bugs:
129
Fixed bugs:
26
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
0 |
0 |
| serious |
9 |
0 |
| important |
33 |
1 |
| normal |
60 |
0 |
| minor |
9 |
0 |
| wishlist |
17 |
0 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1337)*
Open bugs in dependent packages
9 serious, 33 important, 60 normal, 9 minor, 17 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
| 964532 |
abyss: replace transitional bsdmainutils dependency |
|
|
|
| 819617 |
FTBFS: any-i386 - floating point idiosyncracies |
bullseye, buster, ftbfs, sid, stretch |
| 860682 |
bcftools: FTBFS on i386: Test failures |
bullseye, buster, ftbfs, sid, stretch |
| 860704 |
python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) |
bullseye, buster, ftbfs, sid, stretch |
| 870060 |
bcftools FTBFS on big endian: 107 tests failed |
ftbfs |
|
|
| 955403 |
bedtools ftbfs, failing tests on armel, armhf, i386, mipsel |
bullseye, ftbfs, sid |
|
|
| 956675 |
cyvcf2: test failures on ppc64el and s390x |
bullseye, ftbfs, sid |
| 964677 |
cyvcf2: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 returned exit code 13 |
bullseye, ftbfs, sid |
|
|
| 637687 |
libdcmtk2-dev: Dcmtk headers cause compile failure |
upstream, wontfix |
| 675448 |
dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file |
confirmed, fixed-upstream, upstream |
| 697073 |
dcmtk: dcmdjpeg fails to decode a lossless JPEG |
confirmed, upstream |
| 714943 |
Fwd: getscu stops working with dcmtk 3.6.0 |
upstream, wontfix |
| 715029 |
Fwd: dcmnet/libsrc/dulfsm.cc |
confirmed, upstream, wontfix |
| 718557 |
dcmtk: Missing transition in dcmqrscp |
upstream, wontfix |
| 724886 |
IHE Radiology Technical Framework, Volume 2 (RAD TF-2) |
upstream, wontfix |
| 730610 |
C-STORE SCU not working with JPIP Transfer Syntax |
confirmed, upstream |
| 731433 |
iteration 9396u invokes undefined behavior [-Waggressive-loop-optimizations] |
upstream, wontfix |
| 748403 |
Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
upstream |
| 810926 |
dcmtk-www: missing file name extension of /etc/apache2/conf-available/dcmtk |
wontfix |
| 859202 |
warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated |
fixed-upstream |
| 900196 |
dcmtk: wrongly assumes that CMAKE_SYSTEM_VERSION to be non-empty |
patch, upstream |
| 913227 |
dcmqrcbm.cc:319:38: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 128 |
fixed-upstream |
| 913585 |
warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Sint32' {aka 'int'} [-Wformat=] |
fixed-upstream |
| 935879 |
Update to use CharLS 2.0 |
upstream |
|
|
| 961013 |
diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed. |
fixed-upstream |
|
|
| 731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
patch, upstream |
| 749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
|
| 826048 |
Faulty CMake file impairs compiling against GDCM |
moreinfo, wontfix |
|
|
| 957268 |
genometools: ftbfs with GCC-10 |
bullseye, fixed-upstream, patch, sid, upstream |
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 921784 |
gromacs: unhelpful error message from mpicxx.openmpi |
unreproducible |
|
|
| 962550 |
libgclib1: ABI break without soname change |
bullseye, sid |
|
|
| 934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
ftbfs, help, upstream |
|
|
| 961101 |
mmseqs2 FTBFS on i386 |
ftbfs, patch, pending |
|
|
| 960634 |
nanopolish: FTBFS on ppc64el (as well as ppc64 and powerpc), enumerator conflict |
ftbfs |
|
|
| 891197 |
Please switch to pcre2 |
|
| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
|
|
| 933750 |
paleomix: Port to Python3 needed |
upstream |
| 937232 |
paleomix: Python2 removal in sid/bullseye |
bullseye, sid, upstream |
|
|
| 924128 |
prokka: creates world writable directory tree /var/lib/prokka/* |
|
|
|
| 964650 |
pydicom: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.8 returned exit code 13 |
bullseye, ftbfs, sid |
|
|
| 950929 |
python-biom-format: FTBFS with pandas 1.0: test failures |
upstream |
|
|
| 860158 |
python-pbcore: prints warnings with recent h5py on ppc64el |
|
| 919052 |
python-pbcore: some docs for pbcore are not found |
|
|
|
| 949974 |
Finish hangs after flush |
|
|
|
| 956220 |
FTBFS: FileNotFoundError |
ftbfs |
|
|
| 964086 |
r-cran-sf: autopkgtest failures with PROJ 7.1.0 |
|
|
|
| 963326 |
seqmagick: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 returned exit code 13 |
bullseye, ftbfs, help, sid, upstream |
|
|
| 853113 |
spades: Fails to build with unhelpful error message in a "low" memory machine |
|
|
|
| 170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 189616 |
jadetex: Japanese JadeTeX |
|
| 234884 |
Cannot generate PDF when callouts are used |
|
| 310148 |
xmlto: pdf output fails with LaTeX errors |
|
| 345637 |
xmltex: behaves as if --force-confold had been given |
|
| 427443 |
provide a documentation index (like tetex had) |
|
| 444084 |
tex4ht: you-on gets extra space |
moreinfo |
| 450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
|
| 468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
| 536380 |
HTML mode is spewing some XML |
|
| 536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
| 537284 |
Ligature ï¬ becoming ø in avant garde |
|
| 550381 |
tex4ht: Creates invalid html document |
|
| 554637 |
tex4ht: Leaves intermediate files |
wontfix |
| 554998 |
Glitches when using hyperref and math mode |
|
| 554999 |
tex4ht: mk4ht should fail when it encounters errors |
|
| 572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
|
| 581960 |
tex4ht: wrong charset in htlatex output |
|
| 596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
|
| 604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
|
| 615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
fixed-upstream, patch, pending, upstream |
| 635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
| 637127 |
biblatex: Version 1.6-1 breaks "refsection=part" functionality |
|
| 659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
|
| 670040 |
pdfannotextractor & pax do not work at all |
patch |
| 675869 |
make PDF smaller with version1.4 |
|
| 683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
|
| 697728 |
pdfjam: No --no-landscape with --nup possible |
|
| 742276 |
pdfannotextractor & pax do not work at all |
patch |
| 744309 |
FTBFS Please rebuilt from source flash file |
|
| 764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
|
| 767872 |
tex4ht: htlatex fails without non-zero exit status |
|
| 772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
|
| 774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
|
| 792676 |
libpdfbox-java: pdfannotextractor.pl fails to find org.pdfbox.cos.ICOSVisitor class |
patch |
| 801505 |
texlive-latex-extra: complaint about weong file in dpkg trigger |
|
| 807211 |
texlive-latex-extra: bug in cool.sty; dependency on texlive-fonts-extra |
|
| 862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
|
| 866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
| 877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
|
| 877770 |
Q: Why -doc package depends on tex? |
|
| 899413 |
texlive-latex-extra: beamerthemeAachen.sty is missing package tangocolors |
|
| 916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
|
| 917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
|
| 929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
|
| 930850 |
texlive-latex-extra: Update listings macro separator |
|
| 941823 |
tabu: cell background colours broken |
|
| 943723 |
texlive-extra-utils: JRE is not a dependency even though some programs (e.g. arara) need it |
|
| 947064 |
texlive-fonts-extra: fourier-orns.sty broken, docs using the Fourier font no longer compile |
|
| 953072 |
texlive-fonts-extra: NotoColorEmoji.ttf is included in 3 Debian packages |
|
| 953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
|
| 958562 |
texlive-extra-utils: missing man page for pdfcrop |
|
|
|
| 964101 |
tiddit: generates extremely large file during autopkgtesting |
help |
|
|
| 964039 |
vg: FTBFS on mips64el |
ftbfs |
|
|
| 348845 |
please provide a male character as well |
upstream |
| 359991 |
Please add 'daemon' mode |
|
| 371826 |
new exercises |
upstream |
| 388570 |
option for less disk intensity |
upstream |
| 533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
|
| 545585 |
workrave: Cant resume after unlocking screen |
|
| 598402 |
workrave: Should count suspend time as pauses |
|
| 632232 |
workrave: Changing sound options has no effect |
|
| 695344 |
Installs gobject-introspection / library files into system wide paths |
|
| 783845 |
workrave: Pulls in a lot of libraries from xfce4 |
|
| 783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
|
| 789044 |
workrave: lock was blocked by another application |
|
| 802511 |
Please split off gnome-shell extension into separate package with proper dependencies |
|
| 804170 |
workrave: Workrave resets system volume levels |
|
| 829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
|
| 843563 |
Workrave applet unusable |
|
| 853933 |
workrave: segfault when trying to start under wayland |
upstream |
| 911054 |
workrave: desktop instability in multimonitor (3) setup |
|
| 921765 |
workrave: occasionally runs into false activity detection |
|
| 943477 |
workrave: multiple overlaying popups in multimonitor setup |
|
| 955965 |
workrave: Depends on deprecated dbus-glib |
bullseye, sid |
Open bugs in suggested packages
1 important
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
Done bugs
|
|
| 964348 |
bbhash: Missing test dependencies |
|
|
|
| 960316 |
src:bcbio: fails to migrate to testing for too long: depends on package not migrating |
bullseye, sid |
|
|
| 962834 |
bcftools: Have dependency on Perl demoted to "recommended" |
|
|
|
| 933937 |
biobambam2: /usr/bin/fastaexplode is already provided by exonerate |
upstream |
|
|
| 963257 |
cat-bat must build depend on diamond-aligner |
ftbfs |
|
|
| 963318 |
cwltool: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.8 returned exit code 13 |
bullseye, ftbfs, sid |
|
|
| 964344 |
src:fastqc: fails to migrate to testing for too long: B-D on package that fails to migrate |
bullseye, sid |
|
|
| 939670 |
gdcm-doc: depends on cruft package. |
bullseye, sid |
|
|
| 963738 |
gnumed-client: new upstream available |
upstream |
|
|
| 962999 |
mmtf-python: missing test dependencies |
|
|
|
| 962887 |
multiqc: should depend on fonts-font-awesome and/or fonts-glyphicons-halflings (not fonts-glewlwyd) |
|
|
|
| 963277 |
orthanc-dicomweb: FTBFS: ./Build/CMakeFiles/CMakeTmp/./Build/CMakeFiles/CMakeTmp/src.c:11: undefined reference to `pthread_create' |
bullseye, ftbfs, sid |
|
|
| 961700 |
picard-tools build depends on the removed libguava-java-doc |
bullseye, ftbfs, sid |
| 961865 |
picard-tools needs a source-only upload. |
|
|
|
| 813821 |
pynn: FTBFS: TypeError: 'float' object cannot be interpreted as an index |
ftbfs, help |
|
|
| 959587 |
python-biopython: FTBFS: AssertionError: False is not true |
bullseye, ftbfs, sid, upstream |
| 960756 |
python-biopython FTBFS on 32bit: test_NCBI_BLAST_tools.BlastDB failures |
ftbfs, upstream |
| 962944 |
python3-biopython needs Breaks: cnvkit (<< 0.9.7-1~) |
|
|
|
| 962841 |
python3-nanomath: ships /usr/LICENSE |
|
|
|
| 962698 |
python-pauvre: FTBFS if the "DISPLAY" environment variable is exported |
patch |
| 962702 |
python-pauvre: please make the build reproducible |
patch |
|
|
| 963093 |
samtools: recommended dependencies are unnecessary |
|
|
|
| 943956 |
snakemake: please make the build reproducible |
fixed-upstream, patch |
| 955056 |
snakemake: FTBFS with Sphinx 2.4: AttributeError: 'member_descriptor' object has no attribute 'expandtabs' |
ftbfs, upstream |
|
|
| 963246 |
vg FTBFS with Protobuf 3.12.3 |
ftbfs, upstream |
| 963313 |
vg: FTBFS: configure: error: Could not find a version of the library! |
bullseye, ftbfs, sid |
|
