Summary
Bugs of task
covid-19
Total bugs:
185
Open bugs:
150
Fixed bugs:
35
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
2 |
0 |
| serious |
17 |
1 |
| important |
31 |
2 |
| normal |
56 |
2 |
| minor |
22 |
0 |
| wishlist |
17 |
0 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1631)*
Open bugs in dependent packages
2 grave, 17 serious, 31 important, 56 normal, 22 minor, 17 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
|
|
| 1049876 |
bbhash: FTBFS on 32 bit architectures |
ftbfs, sid, trixie |
|
|
| 870060 |
bcftools FTBFS on big endian: 107 tests failed |
fixed-upstream, ftbfs, upstream |
|
|
| 935879 |
Update to use CharLS 2.0 |
upstream |
| 1055872 |
CP-2275: "NaN", "+Infinity" and "-Infinity" |
|
| 1055873 |
dcm2json is missing --convert-un for CP-1066 EVRLE |
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| 1056048 |
Memory leak in dcm2json |
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| 1060677 |
Rounding error in OFStandard::atof |
fixed-upstream, upstream, confirmed |
|
|
| 995966 |
epigrass: epirunner and epidash fail to run due to missing dash modules |
pending |
| 998265 |
epigrass: autopkgtest regression: The 'panel' distribution was not found |
|
| 1057989 |
epigrass: runtime dependency on cython |
sid, trixie |
| 1058470 |
epigrass: please (temporarily) drop python3-numba dependencies |
|
|
|
| 1044536 |
fasta3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
fixed-upstream, ftbfs |
|
|
| 731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
upstream, patch |
| 749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
|
| 826048 |
Faulty CMake file impairs compiling against GDCM |
wontfix, moreinfo |
| 1074387 |
gdcm: Fails to build with poppler 24.06 |
ftbfs, patch |
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 983942 |
gromacs: ftbfs with -march=x86-64-v3 |
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|
|
| 1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
|
|
| 1006686 |
libchipcard-dev: undefined variable in libchipcard-client.pc |
patch, upstream, fixed-upstream |
| 1006687 |
libchipcard6: card.c leaks memory |
patch, upstream |
|
|
| 934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
ftbfs, upstream, help, fixed-upstream |
| 1069691 |
libmaus2: FTBFS on arm64: what(): AutoArray<unsigned long,alloc_type_memalign_cacheline> failed to allocate 1398102 elements (11184816 bytes) |
upstream, confirmed, ftbfs |
|
|
| 1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045898 |
nanook: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
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| 984871 |
ncbi-blast+: Missing headers for shared libraries |
|
| 1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
|
|
| 1001387 |
Wishlist: Package Stone of Orthanc Webviewer |
|
|
|
| 1075361 |
parasail: ftbfs with GCC-14 |
sid, ftbfs, trixie |
|
|
| 1071333 |
pigx-rnaseq: FTBFS: ERROR: could not find report for SALMON at transcript level |
trixie, ftbfs, sid |
|
|
| 1048822 |
plink2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1074546 |
FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) |
ftbfs |
|
|
| 1018448 |
pynn: build-depends on python3-nose or uses it for autopkgtest |
fixed-upstream |
| 1071337 |
pynn: FTBFS: ERROR: unittests.test_recording.test_get |
ftbfs |
|
|
| 1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
|
|
| 1075419 |
python-pairix: ftbfs with GCC-14 |
sid, ftbfs, trixie |
|
|
| 1046218 |
python-streamz: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1058747 |
python3-tornado: invalid escape sequence '\.' in runtests.py |
|
|
|
| 983517 |
pytorch: Build documentation |
|
| 1056388 |
FTBFS with fmtlib 10 |
fixed-upstream, ftbfs |
| 1057644 |
pytorch: build for all supported Python versions |
wontfix |
| 1070379 |
pytorch: CVE-2024-31580 CVE-2024-31583 CVE-2024-31584 |
security, upstream |
| 1071655 |
pytorch: FTBFS on ppc64el |
ftbfs |
| 1072969 |
pytorch: CVE-2024-5480 |
security, upstream |
| 1076183 |
pytorch: please rebuild against flatbuffers |
|
|
|
| 1071106 |
r-cran-sf: autopkgtest regression in testing |
|
|
|
| 1075486 |
salmon: ftbfs with GCC-14 |
trixie, sid, ftbfs |
|
|
| 1048951 |
seqan3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1076925 |
snakemake: FTBFS: failing tests |
ftbfs |
|
|
| 1075545 |
sumaclust: ftbfs with GCC-14 |
ftbfs, sid, trixie |
|
|
| 1005713 |
tensorflow FTBFS; bazel still tries to download during build. |
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|
|
| 170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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| 181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 189616 |
jadetex: Japanese JadeTeX |
|
| 234884 |
Cannot generate PDF when callouts are used |
|
| 310148 |
xmlto: pdf output fails with LaTeX errors |
|
| 345637 |
xmltex: behaves as if --force-confold had been given |
|
| 427443 |
provide a documentation index (like tetex had) |
|
| 444084 |
tex4ht: you-on gets extra space |
moreinfo |
| 450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
|
| 468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
| 536380 |
HTML mode is spewing some XML |
wontfix |
| 536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
| 537284 |
Ligature ï¬ becoming ø in avant garde |
|
| 554637 |
tex4ht: Leaves intermediate files |
wontfix |
| 554998 |
Glitches when using hyperref and math mode |
|
| 554999 |
tex4ht: mk4ht should fail when it encounters errors |
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| 572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
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| 596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
|
| 604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
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| 615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
upstream, patch, pending, fixed-upstream |
| 635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
| 659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
|
| 675869 |
make PDF smaller with version1.4 |
|
| 683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
|
| 744309 |
FTBFS Please rebuilt from source flash file |
|
| 764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
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| 767872 |
tex4ht: htlatex fails without non-zero exit status |
|
| 772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
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| 774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
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| 862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
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| 866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
| 877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
|
| 877770 |
Q: Why -doc package depends on tex? |
|
| 916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
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| 917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
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| 929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
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| 930850 |
texlive-latex-extra: Update listings macro separator |
|
| 941823 |
tabu: cell background colours broken |
|
| 953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
|
| 958562 |
texlive-extra-utils: missing man page for pdfcrop |
|
| 974724 |
no useful documentation of pdfjam commands |
wontfix |
| 997024 |
[greek]babel + cleveref + pagenumbering + label = â |
|
| 1008808 |
texlive-games: [chess.sty] Incorrect usage of babel breaks package |
wontfix |
| 1011759 |
texlive-extra-utils: Script pdfjoin has vanished |
wontfix |
| 1019236 |
Why does mere inclusion of pstricks change A4 to letter? |
|
| 1021166 |
texlive-fonts-extra: sourceserifpro doesn't work with xeLaTeX |
|
| 1023586 |
texlive-extra-utils: pythontex won't find python (when on python3) |
|
| 1026789 |
Broken vf files in package? |
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| 1029325 |
texlive-latex-extra: adequate reports broken-symlink |
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| 1040158 |
texlive-latex-extra: tex4ebook with mathml prints \lim, limsup etc. in italics |
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| 1043258 |
texlive-latex-extra-doc: moderncv.tex fails to build |
|
| 1067614 |
texlive-latex-extra: pdfcomment docs reference the cloud instead of local files; also font option broken |
wontfix |
| 1070721 |
texlive-fonts-extra: Weird dependencies |
|
| 1070802 |
texlive-latex-extra: (regression) acro no longer compiles |
upstream |
| 1072743 |
texlive-extra-utils: pdfxup: --pages option fails if page range omits start or end of range |
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|
|
| 1075571 |
thesias: ftbfs with GCC-14 |
sid, ftbfs, trixie |
|
|
| 1073358 |
toil: FTBFS: ModuleNotFoundError: No module named 'boto' |
ftbfs, sid, trixie |
|
|
| 1049071 |
tombo: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048043 |
trinculo: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
| 1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
|
| 1071816 |
umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> |
ftbfs |
|
|
| 1048635 |
unicycler: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bullseye, trixie, ftbfs, bookworm, sid |
| 987184 |
vg -- excessive variants built, and not tested |
|
| 1013061 |
vg: ftbfs with GCC-12 |
bookworm, sid, trixie, ftbfs |
| 1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
| 1043312 |
vg: Replace transitional bsdmainutils |
|
|
|
| 348845 |
please provide a male character as well |
upstream |
| 359991 |
Please add 'daemon' mode |
|
| 371826 |
new exercises |
upstream |
| 388570 |
option for less disk intensity |
upstream |
| 533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
|
| 545585 |
workrave: Cant resume after unlocking screen |
|
| 598402 |
workrave: Should count suspend time as pauses |
|
| 632232 |
workrave: Changing sound options has no effect |
|
| 695344 |
Installs gobject-introspection / library files into system wide paths |
|
| 783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
|
| 789044 |
workrave: lock was blocked by another application |
|
| 804170 |
workrave: Workrave resets system volume levels |
|
| 829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
|
| 843563 |
Workrave applet unusable |
|
| 853933 |
workrave: segfault when trying to start under wayland |
upstream |
| 911054 |
workrave: desktop instability in multimonitor (3) setup |
|
| 921765 |
workrave: occasionally runs into false activity detection |
|
| 943477 |
workrave: multiple overlaying popups in multimonitor setup |
|
| 980873 |
workrave: Break warning window grabs keyboard focus on Wayland |
|
| 988064 |
workrave: applet does not display timer after screen lock |
|
Open bugs in suggested packages
1 serious, 2 important, 2 normal
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
| 1018312 |
bcbio: build-depends on python3-nose or uses it for autopkgtest |
|
|
|
| 1075928 |
python-anndata: tests fail with scipy 1.13 |
|
|
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| 1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
| 1076912 |
python-seqcluster: FTBFS: AttributeError: module 'scipy.stats' has no attribute 'binom_test' |
ftbfs |
Done bugs
|
|
| 988644 |
Defined Term: ISO 2022 IR 87 is not supported |
upstream, confirmed |
| 1039465 |
DICOM/JSON: (0018,1411) DS [-3. ] # 4,1 Exposure Index |
fixed-upstream, upstream |
| 1056302 |
FreeBSD/iconv: ISO 2022 IR 13\ISO 2022 IR 87 |
|
| 1060104 |
FTBFS on armel with stack-clash-protection enabled |
ftbfs |
| 1060442 |
DCMTK Release 3.6.8 available |
|
| 1062022 |
dcmtk: NMU diff for 64-bit time_t transition |
trixie, pending, sid, patch, experimental |
| 1074483 |
dcmtk: CVE-2024-27628 |
patch, fixed-upstream, security, upstream |
| 1075917 |
dcmtk: autopkgtest regression |
ftbfs |
|
|
| 1070387 |
gdcm: CVE-2024-25569 CVE-2024-22373 CVE-2024-22391 |
upstream, security |
|
|
| 1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
| 1073921 |
gffread: Revert the 0.12.7-4 tests workaround |
|
| 1076731 |
src:gffread: fails to migrate to testing for too long: autopkgtest regression on s390x |
sid, trixie |
|
|
| 891197 |
Please switch to pcre2 |
sid, trixie |
| 1074316 |
ncbi-blast+: Please package version 2.13+ as needed by q2-feature-classifier |
|
| 1075867 |
ncbi-blast+: FTBFS with MbedTLS 3.6 |
ftbfs |
|
|
| 1075795 |
orthanc FTBFS with DCMTK 3.6.8 |
ftbfs |
| 1075916 |
libdcmtk-dev: Removed dependencies are required for a CMake target |
ftbfs |
|
|
| 1075794 |
orthanc-wsi FTBFS with DCMTK 3.6.8 |
ftbfs |
| 1076541 |
orthanc-wsi: autopkgtest failures (binNMU needed) |
|
|
|
| 1074677 |
porechop: FTBFS: ModuleNotFoundError: No module named 'distutils' |
ftbfs, sid, trixie |
|
|
| 1030885 |
python-cogent: FTBFS (some tests require more than one CPU) |
ftbfs, patch |
| 1074562 |
python-cogent: binary-any FTBFS |
ftbfs |
|
|
| 1069359 |
python-cooler: FTBFS due to TypeError in dask.dataframe import |
sid, ftbfs, confirmed, trixie |
|
|
| 1074664 |
python-questplus: FTBFS: AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'? |
ftbfs, sid, trixie |
|
|
| 994423 |
pytorch: Baseline violation on armhf |
trixie, ftbfs, experimental, bullseye, sid, bookworm |
| 1060097 |
pytorch: FBFS: /<<PKGBUILDDIR>>/aten/src/ATen/native/quantized/cpu/qlinear_prepack.cpp:249:103: error: cannot convert âdnnl::memory::data_typeâ to âconst ideep::dims&â {aka âconst std::vector<long int>&â} |
ftbfs |
|
|
| 1070988 |
src:q2-feature-table: fails to migrate to testing for too long: autopkgtest regression |
sid, trixie |
|
|
| 1070842 |
r-bioc-mutationalpatterns: autopkgtest regression with r-base 4.4.0 |
|
|
|
| 1071346 |
r-bioc-rsamtools: FTBFS: samtools_patch.c:37:13: error: format not a string literal and no format arguments |
ftbfs |
|
|
| 976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
sid, bookworm, trixie, bullseye, ftbfs |
|
|
| 1035857 |
texlive-fonts-extra: broken font symlinks for junicode |
bookworm-ignore |
| 1065876 |
texlive-extra-utils: The shebang of script de-macro invokes 'python' rather than 'python3' |
|
|
|
| 1074158 |
FTBFS against dlib in experimental |
sid, patch, trixie, ftbfs |
|
|
| 955965 |
workrave: Depends on deprecated dbus-glib |
bullseye, sid, bookworm |
| 1052115 |
workrave-gnome: needs update for GNOME Shell 46 |
fixed-upstream, upstream, sid, patch, trixie |
|
