Summary
Bugs of task
covid-19
Total bugs:
221
Open bugs:
185
Fixed bugs:
36
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
0 |
0 |
| serious |
9 |
3 |
| important |
49 |
0 |
| normal |
78 |
3 |
| minor |
21 |
0 |
| wishlist |
22 |
0 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1809)*
Open bugs in dependent packages
9 serious, 49 important, 78 normal, 21 minor, 22 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
|
|
| 1094842 |
augur: Please update to latest upstream 28.0.0, released 2025-01-30 |
|
|
|
| 1049876 |
bbhash: FTBFS on 32 bit architectures |
ftbfs, sid, trixie |
| 1096359 |
bbhash: ftbfs with GCC-15 |
forky, sid |
|
|
| 1104751 |
bedtools: FTBFS with GNUMAKEFLAGS=--shuffle=random |
patch |
|
|
| 935879 |
Update to use CharLS 2.0 |
upstream |
| 1055872 |
CP-2275: "NaN", "+Infinity" and "-Infinity" |
|
| 1055873 |
dcm2json is missing --convert-un for CP-1066 EVRLE |
|
| 1056048 |
Memory leak in dcm2json |
|
| 1060677 |
Rounding error in OFStandard::atof |
confirmed, fixed-upstream, upstream |
|
|
| 1096607 |
fasta3: ftbfs with GCC-15 |
forky, sid |
|
|
| 731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
upstream |
| 749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
|
| 826048 |
Faulty CMake file impairs compiling against GDCM |
moreinfo, wontfix |
| 1086435 |
libgdcm-tools: gdcmscu fails with "ProtocolStream as nullptr is invalid" |
upstream |
| 1093693 |
gdcm: Missing build-dep on default-jdk |
|
| 1095011 |
gdcm: Please disable java on hurd-amd64 too |
patch |
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 983942 |
gromacs: ftbfs with -march=x86-64-v3 |
|
|
|
| 1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
|
|
| 1097151 |
lastz: ftbfs with GCC-15 |
forky, sid |
|
|
| 1006686 |
libchipcard-dev: undefined variable in libchipcard-client.pc |
fixed-upstream, patch, upstream |
| 1006687 |
libchipcard6: card.c leaks memory |
patch, upstream |
|
|
| 934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
fixed-upstream, ftbfs, help, upstream |
| 1069691 |
libmaus2: FTBFS on arm64: what(): AutoArray<unsigned long,alloc_type_memalign_cacheline> failed to allocate 1398102 elements (11184816 bytes) |
confirmed, ftbfs, upstream |
| 1091144 |
libmaus2: ftbfs on arm64 prevents building biobambam2 |
ftbfs, sid, trixie |
| 1091568 |
libmaus2: FTBFS on i386: ld: ./.libs/libmaus2.so: undefined reference to `libmaus2::posix::PosixFunctions::fstatSizeAndMode(int, long long&, unsigned char*)' |
ftbfs, sid, trixie |
|
|
| 1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1088028 |
megahit: consider unembedding parallel-hashmap |
|
|
|
| 1099518 |
minimap2: error: type mismatch in conditional expression on loong64 |
patch |
|
|
| 1088472 |
multiqc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1097430 |
nanopolish: ftbfs with GCC-15 |
forky, sid |
|
|
| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
| 984871 |
ncbi-blast+: Missing headers for shared libraries |
|
| 1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
| 1077777 |
ncbi-blast+: makeblastdb yields broken DBs on s390x (BE generally?) |
upstream |
| 1080479 |
ncbi-blast+: failure to create blastdb v5 on riscv64 |
|
|
|
| 1001387 |
Wishlist: Package Stone of Orthanc Webviewer |
|
|
|
| 1074546 |
FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) |
ftbfs |
| 1093109 |
pplacer: FTBFS with OCaml 5.3.0 (error in C stubs) |
ftbfs |
|
|
| 1082368 |
FTBFS: TestIntegration.testIntegration: AssertionError: 1 != 0 |
confirmed, ftbfs |
|
|
| 1102990 |
please remove examples from dist-packages directory |
|
|
|
| 1103472 |
python-biopython: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
| 1090269 |
python-cogent: FTBFS: E ImportError: Numba could not be imported. |
ftbfs |
|
|
| 1103324 |
python-pbcore: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1046218 |
python-streamz: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1083714 |
python-streamz: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 983517 |
pytorch: Build documentation |
|
| 1057644 |
pytorch: build for all supported Python versions |
wontfix |
| 1102203 |
pytorch: CVE-2025-3136 |
security, upstream |
| 1102219 |
pytorch: CVE-2025-2148 |
security, upstream |
| 1102220 |
pytorch: CVE-2025-2149 |
security, upstream |
| 1102229 |
pytorch: CVE-2025-2953 |
fixed-upstream, security, upstream |
| 1102230 |
pytorch: CVE-2025-2998 |
security, upstream |
| 1102231 |
pytorch: CVE-2025-2999 |
security, upstream |
| 1102232 |
pytorch: CVE-2025-3000 |
security, upstream |
| 1102233 |
pytorch: CVE-2025-3001 |
security, upstream |
| 1102236 |
pytorch: CVE-2025-3121 |
security, upstream |
| 1103455 |
pytorch: CVE-2025-3730 |
fixed-upstream, security, upstream |
|
|
| 1104285 |
q2-cutadapt: Fix unstable/amd64 debci failure |
|
|
|
| 1103326 |
qcat: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1081150 |
r-cran-diagnosismed: removed from CRAN repository |
|
|
|
| 1081177 |
r-cran-epicalc: removed from CRAN repository |
|
|
|
| 1083236 |
r-cran-seroincidence: homepage defunct, standardize |
|
| 1083239 |
r-cran-seroincidence: removed from CRAN repository |
|
|
|
| 1084108 |
r-cran-spp: removed from CRAN repository |
|
|
|
| 1088027 |
salmon: consider unembedding parallel-hashmap |
|
| 1097838 |
salmon: ftbfs with GCC-15 |
forky, sid |
| 1103327 |
salmon: FTBFS with the nocheck build profile |
ftbfs, sid, trixie |
|
|
| 1087079 |
seirsplus: Python SyntaxWarning |
|
|
|
| 1048951 |
seqan3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1088534 |
snakemake: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
| 1095394 |
snakemake: tests randomly failing or hanging |
ftbfs, sid, trixie |
|
|
| 1086015 |
build for all supported python3 |
|
| 1088026 |
spades: consider unembedding parallel-hashmap |
|
| 1097913 |
spades: ftbfs with GCC-15 |
forky, sid |
|
|
| 1005713 |
tensorflow FTBFS; bazel still tries to download during build. |
|
| 1084624 |
tensorflow: removal of Python standard libraries in Python 3.13 |
|
|
|
| 170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 189616 |
jadetex: Japanese JadeTeX |
|
| 234884 |
Cannot generate PDF when callouts are used |
|
| 310148 |
xmlto: pdf output fails with LaTeX errors |
|
| 345637 |
xmltex: behaves as if --force-confold had been given |
|
| 427443 |
provide a documentation index (like tetex had) |
|
| 444084 |
tex4ht: you-on gets extra space |
moreinfo |
| 450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
|
| 468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
| 536380 |
HTML mode is spewing some XML |
wontfix |
| 536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
| 537284 |
Ligature ï¬ becoming ø in avant garde |
|
| 554637 |
tex4ht: Leaves intermediate files |
wontfix |
| 554998 |
Glitches when using hyperref and math mode |
|
| 554999 |
tex4ht: mk4ht should fail when it encounters errors |
|
| 572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
|
| 596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
|
| 604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
|
| 615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
fixed-upstream, patch, pending, upstream |
| 635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
| 659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
|
| 675869 |
make PDF smaller with version1.4 |
|
| 683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
|
| 744309 |
FTBFS Please rebuilt from source flash file |
|
| 764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
|
| 767872 |
tex4ht: htlatex fails without non-zero exit status |
|
| 772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
|
| 774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
|
| 862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
|
| 866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
| 877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
|
| 877770 |
Q: Why -doc package depends on tex? |
|
| 916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
|
| 917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
|
| 929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
|
| 930850 |
texlive-latex-extra: Update listings macro separator |
|
| 941823 |
tabu: cell background colours broken |
|
| 953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
|
| 958562 |
texlive-extra-utils: missing man page for pdfcrop |
|
| 974724 |
no useful documentation of pdfjam commands |
|
| 997024 |
[greek]babel + cleveref + pagenumbering + label = â |
|
| 1008808 |
texlive-games: [chess.sty] Incorrect usage of babel breaks package |
wontfix |
| 1011759 |
texlive-extra-utils: Script pdfjoin has vanished |
wontfix |
| 1019236 |
Why does mere inclusion of pstricks change A4 to letter? |
|
| 1021166 |
texlive-fonts-extra: sourceserifpro doesn't work with xeLaTeX |
|
| 1023586 |
texlive-extra-utils: pythontex won't find python (when on python3) |
|
| 1026789 |
Broken vf files in package? |
|
| 1029325 |
texlive-latex-extra: adequate reports broken-symlink |
|
| 1040158 |
texlive-latex-extra: tex4ebook with mathml prints \lim, limsup etc. in italics |
|
| 1043258 |
texlive-latex-extra-doc: moderncv.tex fails to build |
|
| 1067614 |
texlive-latex-extra: pdfcomment docs reference the cloud instead of local files; also font option broken |
wontfix |
| 1070721 |
texlive-fonts-extra: Weird dependencies |
|
| 1070802 |
texlive-latex-extra: (regression) acro no longer compiles |
upstream |
| 1072743 |
texlive-extra-utils: pdfxup: --pages option fails if page range omits start or end of range |
|
| 1088082 |
texlive-fonts-extra: please consider exposing OpenType fonts to fontconfig |
|
| 1091447 |
texlive-latex-extra: fontsetup : some setups fail to define \symbf |
upstream |
| 1091655 |
pamphletangler.1: Some remarks and a patch with editorial changes for this man page |
patch |
| 1091760 |
pdfbook2.1: Some remarks and a patch with editorial changes for this man page |
patch |
| 1091785 |
pdfjam.1: Some remarks and a patch with editorial changes for this man page |
fixed-upstream, patch |
| 1092880 |
texlive-latex-extra: Tool pyMergeChanges.py incorrectly handles multiline figure captions. |
|
| 1099643 |
texlive-publishers > acmart: The font "libertinusmath-regular" cannot be found |
|
| 1101782 |
texlive-extra-utils: pdfbook2 --- meaning of -s has been reversed |
|
| 1102046 |
texlive-extra-utils: bundledoc: missing dependency on libstring-shellquote-perl |
|
| 1103893 |
Please switch to libpdfbox2-java |
|
|
|
| 1097993 |
thesias: ftbfs with GCC-15 |
forky, sid |
|
|
| 1098008 |
tnseq-transit: ftbfs with GCC-15 |
forky, sid |
|
|
| 1048043 |
trinculo: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
| 1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
|
| 1071816 |
umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> |
ftbfs |
|
|
| 1089115 |
umis: tracebacks normally fatal during autopkgtest runs |
upstream |
|
|
| 976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, ftbfs, sid, trixie |
| 987184 |
vg -- excessive variants built, and not tested |
|
| 1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
| 1089275 |
vg: FTBFS with make 4.4.1 |
ftbfs, sid, trixie |
|
|
| 348845 |
please provide a male character as well |
upstream |
| 359991 |
Please add 'daemon' mode |
|
| 371826 |
new exercises |
upstream |
| 388570 |
option for less disk intensity |
upstream |
| 533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
|
| 545585 |
workrave: Cant resume after unlocking screen |
|
| 598402 |
workrave: Should count suspend time as pauses |
|
| 632232 |
workrave: Changing sound options has no effect |
|
| 695344 |
Installs gobject-introspection / library files into system wide paths |
|
| 783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
|
| 789044 |
workrave: lock was blocked by another application |
|
| 804170 |
workrave: Workrave resets system volume levels |
|
| 829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
|
| 843563 |
Workrave applet unusable |
|
| 853933 |
workrave: segfault when trying to start under wayland |
upstream |
| 911054 |
workrave: desktop instability in multimonitor (3) setup |
|
| 921765 |
workrave: occasionally runs into false activity detection |
|
| 943477 |
workrave: multiple overlaying popups in multimonitor setup |
|
| 980873 |
workrave: Break warning window grabs keyboard focus on Wayland |
|
| 988064 |
workrave: applet does not display timer after screen lock |
|
|
|
| 1098113 |
wtdbg2: ftbfs with GCC-15 |
forky, sid |
Open bugs in suggested packages
3 serious, 3 normal
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
|
|
| 1075928 |
python-anndata: tests fail with scipy 1.13 |
|
| 1094924 |
python-anndata compatibility with zarr3 |
fixed-upstream, ftbfs, sid, trixie |
| 1100261 |
python-anndata: FTBFS: E AttributeError: module 'zarr' has no attribute 'DirectoryStore' |
fixed-upstream, ftbfs, sid, trixie |
|
|
| 1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1102852 |
vienna-rna: add perl-xs-dev to Build-Depends |
|
Done bugs
|
|
| 1095639 |
dcmtk documentation update |
|
| 1098944 |
libdcmtk19: strict dependency on dcmtk-data makes smooth transitions impossible |
|
| 1103954 |
src:dcmtk: fails to migrate to testing for too long |
sid, trixie |
|
|
| 1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
ftbfs |
|
|
| 1070387 |
gdcm: CVE-2024-25569 CVE-2024-22373 CVE-2024-22391 |
security, upstream |
|
|
| 1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
|
|
| 1103674 |
gnumed-client: new upstream available: 1.8.21 / v22.31 |
upstream |
|
|
| 1097434 |
ncbi-blast+: ftbfs with GCC-15 |
forky, sid |
| 1100037 |
ncbi-blast+: missing commands (blastn_vdb, etc.) |
|
|
|
| 1099504 |
libnthash-dev unconditionally depends on libomp-dev |
forky, sid |
|
|
| 1103504 |
orthanc: autopkgtest failure |
|
|
|
| 1103505 |
orthanc-wsi: autopkgtest regression |
|
| 1103569 |
src:orthanc-wsi: fails to migrate to testing for too long |
sid, trixie |
| 1104044 |
orthanc-wsi: Plugin OrthancWSI fails to start on arm64, ppc64el, riscv64 and s390x |
|
|
|
| 1103196 |
plip: FTBFS: help2man: can't get `--help' info from /<<PKGBUILDDIR>>/debian/plip/usr/bin/plipcmd |
ftbfs, sid, trixie |
|
|
| 1085786 |
porechop: Python SyntaxWarning |
|
|
|
| 1103137 |
pydicom: FTBFS in testing/i386: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13 |
ftbfs, sid, trixie |
|
|
| 1071337 |
pynn: FTBFS: ERROR: unittests.test_recording.test_get |
ftbfs |
| 1102535 |
pynn: FTBFS: ModuleNotFoundError: No module named 'distutils' |
ftbfs, sid, trixie |
|
|
| 994423 |
pytorch: Baseline violation on armhf |
bookworm, bullseye, experimental, ftbfs, sid, trixie |
| 1083727 |
pytorch: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
| 1083729 |
pytorch: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
| 1102472 |
python3-torch: -march=native leaks into rdeps |
|
|
|
| 1103082 |
r-cran-epir: FTBFS in testing/i386: make: *** [debian/rules:4: binary] Error 25 |
ftbfs, sid, trixie |
|
|
| 1103097 |
seqan3: FTBFS in testing/i386: alphabet_base.hpp:56:24: error: static assertion failed: alphabet size must be >= 1 |
ftbfs, sid, trixie |
|
|
| 976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid, trixie |
| 1087093 |
spades: Python SyntaxWarning |
|
| 1098530 |
ariba: FTBFS: TestAssembly.test_assemble_with_spades fails |
ftbfs, sid, trixie |
| 1100877 |
src:spades: fails to migrate to testing for too long |
sid, trixie |
|
|
| 1035857 |
texlive-fonts-extra: broken font symlinks for junicode |
bookworm-ignore |
|
|
| 1084681 |
toil: removal of Python standard libraries in Python 3.13 |
fixed-upstream, patch |
| 1087116 |
toil: Python SyntaxWarning |
patch |
| 1100817 |
toil: FTBFS: AssertionError: None == None |
ftbfs, sid, trixie |
| 1101085 |
toil: FTBFS: toil.batchSystems.DeadlockException: Deadlock encountered: The workflow is service deadlocked - all 1 running jobs have been the same active services for at least 60 seconds |
ftbfs, sid, trixie |
|
|
| 955965 |
workrave: Depends on deprecated dbus-glib |
bookworm, bullseye, sid |
| 1101970 |
workrave: missing Replaces for workrave-data |
patch |
|
