Debian Med Project
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Summary
Bugs of task covid-19
Total bugs: 159
Open bugs: 153
Fixed bugs: 6
Links to other tasks
Biology 177 (1485)
Phylogeny 3 (21)
Cloud 40 (342)
Covid-19 153 (1346)
Medical data 1 (3)
Dental 0 (0)
Epidemiology 4 (27)
Imaging 245 (1164)
Laboratory 1 (9)
Oncology 2 (39)
Pharmacology 1 (9)
Physics 24 (165)
Practice 3 (27)
Psychology 7 (65)
Research 0 (0)
Statistics 0 (0)
Tools 34 (233)
Typesetting 71 (565)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 2 0
important 36 1
normal 78 0
minor 13 0
wishlist 23 0

Summary bugs page of task Covid-19

Immediately looking into bugs of the dependencies of this task is advised (1346)*

Open bugs in dependent packages

2 serious, 36 important, 78 normal, 13 minor, 23 wishlist
920282 abyss fails to build on hurd - googletest EXPECT_DEATH
819617 FTBFS: any-i386 - floating point idiosyncracies bullseye, buster, ftbfs, sid, stretch
860682 bcftools: FTBFS on i386: Test failures bullseye, buster, ftbfs, sid, stretch
860704 python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) bullseye, buster, ftbfs, sid, stretch
870060 bcftools FTBFS on big endian: 107 tests failed ftbfs, upstream
986203 bustools: Please provide autopkgtest newcomer
637687 libdcmtk2-dev: Dcmtk headers cause compile failure upstream, wontfix
675448 dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file confirmed, fixed-upstream, upstream
697073 dcmtk: dcmdjpeg fails to decode a lossless JPEG confirmed, upstream
714943 Fwd: getscu stops working with dcmtk 3.6.0 upstream, wontfix
715029 Fwd: dcmnet/libsrc/dulfsm.cc confirmed, upstream, wontfix
718557 dcmtk: Missing transition in dcmqrscp upstream, wontfix
724886 IHE Radiology Technical Framework, Volume 2 (RAD TF-2) upstream, wontfix
730610 C-STORE SCU not working with JPIP Transfer Syntax confirmed, upstream
731433 iteration 9396u invokes undefined behavior [-Waggressive-loop-optimizations] upstream, wontfix
748403 Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls upstream
810926 dcmtk-www: missing file name extension of /etc/apache2/conf-available/dcmtk wontfix
859202 warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated fixed-upstream
900196 dcmtk: wrongly assumes that CMAKE_SYSTEM_VERSION to be non-empty patch, upstream
935879 Update to use CharLS 2.0 upstream
981326 dcmtk 3.6.6 has been released
987972 dcmtk user/group
988417 dcmtk: Memory leak in OFCharacterEncoding::selectEncoding pending
988644 Defined Term: ISO 2022 IR 87 is not supported
989108 dcmtk-doc: broken symlink: /usr/share/doc/dcmtk-doc/html/jquery.js -> ../../../javascript/jquery/jquery.js
990134 dcmtk: legacy conffiles leftover
990135 dcmtk: leftovers after package purge
988556 freebayes FTCBFS -- B-D on python3 patch
731435 warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] patch, upstream
749783 gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls
826048 Faulty CMake file impairs compiling against GDCM moreinfo, wontfix
989296 missing dependencies and wrong path in the .cmake file
644397 Provide runtime detection for CPU SIMD capabilities upstream
921784 gromacs: unhelpful error message from mpicxx.openmpi unreproducible
983942 gromacs: ftbfs with -march=x86-64-v3
986041 imagej script bug in a system with no swap patch
988815 libij-java-doc: broken symlink: /usr/share/doc/libij-java/api/jquery/jquery-ui.min.js -> ../../../../javascript/jquery/jquery-ui.min.js
984067 ivar: ftbfs with GCC-11 bookworm, sid
984081 lastz: ftbfs with GCC-11 bookworm, sid
934619 libmaus2 FTBFS (mostly 32bit): error: no matching function for call fixed-upstream, ftbfs, help, upstream
983767 nanopolish ftbfs with the nocheck profile
891197 Please switch to pcre2
956850 ncbi-blast+: Please provide /usr/bin/legacy_blast.pl
984871 ncbi-blast+: Missing headers for shared libraries
981753 COPY cannot find "/usr/share/nodejs/axios/dist/axios.min.js" patch
989328 libpicard-java-doc: broken symlink: /usr/share/doc/libpicard-java/api/jquery/external/jquery/jquery.js -> ../../../../../../javascript/jquery/jquery.min.js
989961 picard-tools: Wrong classpath in PicardCommandLine patch
985144 pigx-rnaseq -- Fails to build reproducibly: different binaries on usrmerge system patch
986410 autopkg tests don't run with the same dependencies as during the build pending
965361 python-cooler: please make the build reproducible patch, pending
979625 autopkgtest: ModuleNotFoundError (ipytree) and AssertionError
860158 python-pbcore: prints warnings with recent h5py on ppc64el
919052 python-pbcore: some docs for pbcore are not found
987289 python-bz2file: no longer useful since Python 3.3
949974 Finish hangs after flush
988772 python-tornado-doc: broken symlink: /usr/share/doc/python-tornado/rst -> html/_sources
983517 pytorch: Build documentation
984304 pytorch: ftbfs with GCC-11 bookworm, sid
988778 python3-torch: broken symlink: /usr/lib/python3/dist-packages/torch/test -> ../../../libtorch-test
983749 The autopkgtest test depends are not available on s390x
970404 shovill: Please provide autopkgtest
853113 spades: Fails to build with unhelpful error message in a "low" memory machine
976523 spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" bullseye, ftbfs, sid
170477 xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist
181444 xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist
184072 xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist
184086 xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist
189616 jadetex: Japanese JadeTeX
234884 Cannot generate PDF when callouts are used
310148 xmlto: pdf output fails with LaTeX errors
345637 xmltex: behaves as if --force-confold had been given
427443 provide a documentation index (like tetex had)
444084 tex4ht: you-on gets extra space moreinfo
450941 texlive-fonts-extra: cannot use mathtime/belleek
468225 pdfjam: pdfnup does not use /etc/papersize moreinfo
536380 HTML mode is spewing some XML
536393 HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity)
537284 Ligature fi becoming ø in avant garde
550381 tex4ht: Creates invalid html document
554637 tex4ht: Leaves intermediate files wontfix
554998 Glitches when using hyperref and math mode
554999 tex4ht: mk4ht should fail when it encounters errors
572226 tex4ht: Incorrect output for align, eqnarray, inline longrightarrow
596703 texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it
604054 if hyperref is loaded before glossaries then text size is adapted wrongly
615596 tex4ht: mk4ht dblatex file.tex fails with xtpipes error fixed-upstream, patch, pending, upstream
635834 texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged wontfix
637127 biblatex: Version 1.6-1 breaks "refsection=part" functionality
659772 landscape sciposter + hyperref + latex + dvips = center-mirrored image
670040 pdfannotextractor & pax do not work at all patch
675869 make PDF smaller with version1.4
683163 xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?)
697728 pdfjam: No --no-landscape with --nup possible
742276 pdfannotextractor & pax do not work at all patch
744309 FTBFS Please rebuilt from source flash file
764122 MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto
767872 tex4ht: htlatex fails without non-zero exit status
772378 texlive-latex-extra-doc: bashism in /bin/sh script
774942 texlive-latex-extra: package description has too many blank lines and is too long
792676 libpdfbox-java: pdfannotextractor.pl fails to find org.pdfbox.cos.ICOSVisitor class patch
801505 texlive-latex-extra: complaint about weong file in dpkg trigger
807211 texlive-latex-extra: bug in cool.sty; dependency on texlive-fonts-extra
862966 texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable
866114 texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome moreinfo
877769 Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not)
877770 Q: Why -doc package depends on tex?
899413 texlive-latex-extra: beamerthemeAachen.sty is missing package tangocolors
916796 IEEEfull.bib: cannot be read in encoding 'utf8' by biber
917996 texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex.
929558 texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty
930850 texlive-latex-extra: Update listings macro separator
941823 tabu: cell background colours broken
947064 texlive-fonts-extra: fourier-orns.sty broken, docs using the Fourier font no longer compile
953072 texlive-fonts-extra: NotoColorEmoji.ttf is included in 3 Debian packages
953073 texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages
958562 texlive-extra-utils: missing man page for pdfcrop
974724 no useful documentation of pdfjam commands wontfix
976080 pdfxup doesn't work anymore fixed-upstream
987778 texlive-latex-extra: fails to declare dependency on libspreadsheet-parseexcel-perl
989621 texlive-latex-extra: incompatible regexpatch.sty version fixed-upstream, pending, upstream
990360 texlive-publishers: update revtex to v4.2 fixed-upstream
990494 texlive-latex-extra: missing dependency on texlive-science for invoice.sty
984958 tnseq-transit: spews SyntaxWarning during installation
980509 umap-learn: Binary package name should be python3-umap-learn pending
976511 vg: FTBFS on arm64: configure: error: Could not find a version of the library! bullseye, ftbfs, sid
987184 vg -- excessive variants built, and not tested
978918 vsearch: ftbfs with autoconf 2.70 bookworm, sid
982139 vsearch: breaks q2-quality-control test suite on ppc64el
348845 please provide a male character as well upstream
359991 Please add 'daemon' mode
371826 new exercises upstream
388570 option for less disk intensity upstream
533294 Improve .desktop file: Office category fits better than Accesibility and german comment
545585 workrave: Cant resume after unlocking screen
598402 workrave: Should count suspend time as pauses
632232 workrave: Changing sound options has no effect
695344 Installs gobject-introspection / library files into system wide paths
783845 workrave: Pulls in a lot of libraries from xfce4
783872 [workrave] xfce4 panel plugin uses the wrong path in desktop file
789044 workrave: lock was blocked by another application
802511 Please split off gnome-shell extension into separate package with proper dependencies
804170 workrave: Workrave resets system volume levels
829450 workrave: Cannot interract with Workrave icon in KDE system tray
843563 Workrave applet unusable
853933 workrave: segfault when trying to start under wayland upstream
911054 workrave: desktop instability in multimonitor (3) setup
921765 workrave: occasionally runs into false activity detection
943477 workrave: multiple overlaying popups in multimonitor setup
955965 workrave: Depends on deprecated dbus-glib bullseye, sid
967815 workrave: depends on deprecated GTK 2
980873 workrave: Break warning window grabs keyboard focus on Wayland
988064 workrave: applet does not display timer after screen lock

Open bugs in suggested packages

1 important
928076 bcbio: Workflows not ready for non-developers to depend on.

Done bugs

970597 src:changeo: no autopkgtest available yet newcomer
939670 gdcm-doc: depends on cruft package. bullseye, sid
987297 Dependency to libpth20
984161 gromacs: ftbfs with GCC-11 bookworm, fixed-upstream, sid, upstream
813821 pynn: FTBFS: TypeError: 'float' object cannot be interpreted as an index ftbfs, help
990513 texlive-extra-utils: make4ht unusable because make4ht-logging.lua is missing buster
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Tue, 27 Jul 2021 03:55:27 -0000