Summary
Bugs of task
covid-19
Total bugs:
165
Open bugs:
134
Fixed bugs:
31
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
0 |
0 |
| serious |
7 |
1 |
| important |
33 |
3 |
| normal |
59 |
1 |
| minor |
10 |
0 |
| wishlist |
20 |
0 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1294)*
Open bugs in dependent packages
7 serious, 33 important, 59 normal, 10 minor, 20 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
| 964532 |
abyss: replace transitional bsdmainutils dependency |
|
|
|
| 819617 |
FTBFS: any-i386 - floating point idiosyncracies |
bullseye, buster, ftbfs, sid, stretch |
| 860682 |
bcftools: FTBFS on i386: Test failures |
bullseye, buster, ftbfs, sid, stretch |
| 860704 |
python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) |
bullseye, buster, ftbfs, sid, stretch |
| 870060 |
bcftools FTBFS on big endian: 107 tests failed |
ftbfs |
|
|
| 955403 |
bedtools ftbfs, failing tests on armel, armhf, i386, mipsel |
bullseye, ftbfs, pending, sid |
|
|
| 970597 |
src:changeo: no autopkgtest available yet |
newcomer |
|
|
| 956675 |
cyvcf2: test failures on ppc64el and s390x |
bullseye, ftbfs, sid |
|
|
| 637687 |
libdcmtk2-dev: Dcmtk headers cause compile failure |
upstream, wontfix |
| 675448 |
dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file |
confirmed, fixed-upstream, upstream |
| 697073 |
dcmtk: dcmdjpeg fails to decode a lossless JPEG |
confirmed, upstream |
| 714943 |
Fwd: getscu stops working with dcmtk 3.6.0 |
upstream, wontfix |
| 715029 |
Fwd: dcmnet/libsrc/dulfsm.cc |
confirmed, upstream, wontfix |
| 718557 |
dcmtk: Missing transition in dcmqrscp |
upstream, wontfix |
| 724886 |
IHE Radiology Technical Framework, Volume 2 (RAD TF-2) |
upstream, wontfix |
| 730610 |
C-STORE SCU not working with JPIP Transfer Syntax |
confirmed, upstream |
| 731433 |
iteration 9396u invokes undefined behavior [-Waggressive-loop-optimizations] |
upstream, wontfix |
| 748403 |
Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
upstream |
| 810926 |
dcmtk-www: missing file name extension of /etc/apache2/conf-available/dcmtk |
wontfix |
| 859202 |
warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated |
fixed-upstream |
| 900196 |
dcmtk: wrongly assumes that CMAKE_SYSTEM_VERSION to be non-empty |
patch, upstream |
| 913227 |
dcmqrcbm.cc:319:38: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 128 |
fixed-upstream |
| 913585 |
warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Sint32' {aka 'int'} [-Wformat=] |
fixed-upstream |
| 935879 |
Update to use CharLS 2.0 |
upstream |
|
|
| 731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
patch, upstream |
| 749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
|
| 826048 |
Faulty CMake file impairs compiling against GDCM |
moreinfo, wontfix |
|
|
| 962553 |
gffread: autopkgtest needs update for new version of gff2aplot: warning on stderr |
bullseye, sid |
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 921784 |
gromacs: unhelpful error message from mpicxx.openmpi |
unreproducible |
|
|
| 934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
ftbfs, help, upstream |
|
|
| 960634 |
nanopolish: FTBFS on ppc64el (as well as ppc64 and powerpc), enumerator conflict |
ftbfs |
|
|
| 891197 |
Please switch to pcre2 |
|
| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
|
|
| 975587 |
odil: FTBFS against boost_1.74 |
ftbfs |
|
|
| 975858 |
pplacer: FTBFS: Error: Unbound module Gsl_error |
bullseye, ftbfs, sid |
|
|
| 950474 |
python-cogent FTBFS on armel and i386: test failures |
fixed-upstream, ftbfs, upstream |
| 972504 |
python-cogent ftbfs with python3.9 as supported python3 version |
bullseye, ftbfs, sid |
|
|
| 965361 |
python-cooler: please make the build reproducible |
patch, pending |
|
|
| 860158 |
python-pbcore: prints warnings with recent h5py on ppc64el |
|
| 919052 |
python-pbcore: some docs for pbcore are not found |
|
|
|
| 949974 |
Finish hangs after flush |
|
|
|
| 974210 |
pytorch's autopkg tests fail |
|
|
|
| 956220 |
FTBFS: FileNotFoundError |
ftbfs |
| 974716 |
q2-cutadapt: unsatisfiable build-dependency |
|
|
|
| 974840 |
qa-feature-table: unsatisfiable build-dependencies |
|
|
|
| 974733 |
q2-quality-filter: unsatisfiable build-dependencies |
|
|
|
| 970404 |
shovill: Please provide autopkgtest |
|
|
|
| 853113 |
spades: Fails to build with unhelpful error message in a "low" memory machine |
|
|
|
| 170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 189616 |
jadetex: Japanese JadeTeX |
|
| 234884 |
Cannot generate PDF when callouts are used |
|
| 310148 |
xmlto: pdf output fails with LaTeX errors |
|
| 345637 |
xmltex: behaves as if --force-confold had been given |
|
| 427443 |
provide a documentation index (like tetex had) |
|
| 444084 |
tex4ht: you-on gets extra space |
moreinfo |
| 450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
|
| 468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
| 536380 |
HTML mode is spewing some XML |
|
| 536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
| 537284 |
Ligature ï¬ becoming ø in avant garde |
|
| 550381 |
tex4ht: Creates invalid html document |
|
| 554637 |
tex4ht: Leaves intermediate files |
wontfix |
| 554998 |
Glitches when using hyperref and math mode |
|
| 554999 |
tex4ht: mk4ht should fail when it encounters errors |
|
| 572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
|
| 581960 |
tex4ht: wrong charset in htlatex output |
|
| 596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
|
| 604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
|
| 615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
fixed-upstream, patch, pending, upstream |
| 635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
| 637127 |
biblatex: Version 1.6-1 breaks "refsection=part" functionality |
|
| 659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
|
| 670040 |
pdfannotextractor & pax do not work at all |
patch |
| 675869 |
make PDF smaller with version1.4 |
|
| 683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
|
| 697728 |
pdfjam: No --no-landscape with --nup possible |
|
| 742276 |
pdfannotextractor & pax do not work at all |
patch |
| 744309 |
FTBFS Please rebuilt from source flash file |
|
| 764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
|
| 767872 |
tex4ht: htlatex fails without non-zero exit status |
|
| 772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
|
| 774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
|
| 792676 |
libpdfbox-java: pdfannotextractor.pl fails to find org.pdfbox.cos.ICOSVisitor class |
patch |
| 801505 |
texlive-latex-extra: complaint about weong file in dpkg trigger |
|
| 807211 |
texlive-latex-extra: bug in cool.sty; dependency on texlive-fonts-extra |
|
| 862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
|
| 866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
| 877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
|
| 877770 |
Q: Why -doc package depends on tex? |
|
| 899413 |
texlive-latex-extra: beamerthemeAachen.sty is missing package tangocolors |
|
| 916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
|
| 917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
|
| 929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
|
| 930850 |
texlive-latex-extra: Update listings macro separator |
|
| 941823 |
tabu: cell background colours broken |
|
| 943723 |
texlive-extra-utils: JRE is not a dependency even though some programs (e.g. arara) need it |
|
| 947064 |
texlive-fonts-extra: fourier-orns.sty broken, docs using the Fourier font no longer compile |
|
| 953072 |
texlive-fonts-extra: NotoColorEmoji.ttf is included in 3 Debian packages |
|
| 953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
|
| 958562 |
texlive-extra-utils: missing man page for pdfcrop |
|
| 973732 |
texlive-bibtex-extra: bbl2bib fails to load BibTeX/Parser.pm |
pending |
| 974724 |
no useful documentation of pdfjam commands |
|
|
|
| 348845 |
please provide a male character as well |
upstream |
| 359991 |
Please add 'daemon' mode |
|
| 371826 |
new exercises |
upstream |
| 388570 |
option for less disk intensity |
upstream |
| 533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
|
| 545585 |
workrave: Cant resume after unlocking screen |
|
| 598402 |
workrave: Should count suspend time as pauses |
|
| 632232 |
workrave: Changing sound options has no effect |
|
| 695344 |
Installs gobject-introspection / library files into system wide paths |
|
| 783845 |
workrave: Pulls in a lot of libraries from xfce4 |
|
| 783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
|
| 789044 |
workrave: lock was blocked by another application |
|
| 802511 |
Please split off gnome-shell extension into separate package with proper dependencies |
|
| 804170 |
workrave: Workrave resets system volume levels |
|
| 829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
|
| 843563 |
Workrave applet unusable |
|
| 853933 |
workrave: segfault when trying to start under wayland |
upstream |
| 911054 |
workrave: desktop instability in multimonitor (3) setup |
|
| 921765 |
workrave: occasionally runs into false activity detection |
|
| 943477 |
workrave: multiple overlaying popups in multimonitor setup |
|
| 955965 |
workrave: Depends on deprecated dbus-glib |
bullseye, sid |
| 967815 |
workrave: depends on deprecated GTK 2 |
|
Open bugs in suggested packages
1 serious, 3 important, 1 normal
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
|
|
| 971408 |
simde: FTBFS when dpkg-buildflags passes -ffile-prefix-map |
patch |
| 971429 |
simde: autopkgtest failure on armhf |
bullseye, fixed-upstream, sid |
|
|
| 973947 |
python3-rna, librna-perl: Cannot fulfill the dependencies |
|
| 973956 |
vienna-rna: build-depends on python3-all-dev, but only builds for the default python3 version |
ftbfs |
Done bugs
|
|
| 973804 |
bcbio: FTBFS undeclared build-dependency on git |
ftbfs |
|
|
| 973977 |
centrifuge FTCBFS: uses uname for bits detection |
patch |
|
|
| 971412 |
libdcmtk-dev: undeclared conflict with libcharls-dev |
|
| 971433 |
libcharls-dev: Problem with latest unstable install |
bullseye, confirmed, experimental, fixed-upstream, ftbfs, patch, sid, upstream |
| 973723 |
libcharls-dev ships libcharls.so which is also in libdcmtk-dev |
bullseye, confirmed, experimental, fixed-upstream, ftbfs, patch, sid, upstream |
|
|
| 939670 |
gdcm-doc: depends on cruft package. |
bullseye, sid |
|
|
| 974660 |
ginkgocadx: FTBFS in sid |
ftbfs, patch |
|
|
| 971470 |
gnumed-client: autopkgtest must be marked superficial |
|
| 974529 |
gnumed-client: new upstream available |
upstream |
|
|
| 973639 |
libgromacs6: missing Breaks+Replaces: libgromacs5 |
upstream |
|
|
| 971111 |
gubbins: FTBFS: pkg_resources.extern.packaging.requirements.InvalidRequirement: Parse error at "'/build/g'": Expected W:(abcd...) |
bullseye, ftbfs, help, patch, sid, upstream |
|
|
| 972933 |
lumpy-sv: binary-all FTBFS |
ftbfs |
| 972934 |
lumpy-sv: Cannot fulfill the build dependencies |
ftbfs |
| 972935 |
lumpy-sv must build depend on python3-pysam |
ftbfs |
| 973622 |
lumpy-sv,lumpy-sv-examples: both ship /usr/share/lumpy-sv/scripts/lumpyexpress.config |
|
|
|
| 973624 |
nanofilt: ships /usr/lib/python3/dist-packages/scripts/test.sh |
|
|
|
| 973612 |
orthanc: libcivetweb version mismatch |
|
|
|
| 974850 |
proteinortho must not use -march=native -mtune=native |
|
|
|
| 813821 |
pynn: FTBFS: TypeError: 'float' object cannot be interpreted as an index |
ftbfs, help |
|
|
| 950929 |
python-biom-format: FTBFS with pandas 1.0: test failures |
fixed-upstream, ftbfs, upstream |
| 973964 |
python-biom-format: please make the build reproducible |
patch |
| 974050 |
python3-biom-format: ships /usr/lib/python3/dist-packages/.coverage |
|
| 974178 |
python3-biom-format: debci tests fail: Object of type bytes is not JSON serializable |
|
|
|
| 973018 |
python-etelemetry's autopkg tests are failing with python3.9 |
bullseye, sid |
|
|
| 973801 |
python-pairix: please make the build reproducible |
patch |
|
|
| 973178 |
python-streamz: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.9 3.8" returned exit code 13 |
bullseye, ftbfs, sid |
|
|
| 972137 |
r-bioc-tcgabiolinks: autopkgtest regression |
bullseye, help, sid, upstream |
|
|
| 966433 |
seqan autopkg test failures triggered by gcc-defaults |
bullseye, sid |
| 973001 |
seqan3: autopackage tests need updating for new googletest |
ftbfs |
|
|
| 972250 |
vienna-rna needs a sourceful upload for python3.9 |
bullseye, ftbfs, sid |
|
|
| 971793 |
vt: conflicting build-dependencies. |
patch |
|
