Summary
Bugs of task
covid-19
Total bugs:
228
Open bugs:
171
Fixed bugs:
57
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
1 |
0 |
| serious |
5 |
0 |
| important |
27 |
1 |
| normal |
60 |
3 |
| minor |
57 |
0 |
| wishlist |
17 |
0 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1310)*
Open bugs in dependent packages
1 grave, 5 serious, 27 important, 60 normal, 57 minor, 17 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
|
|
| 1044079 |
augur: FTBFS with pandas 2.0 |
fixed-upstream, help |
|
|
| 1043819 |
bbhash: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1049876 |
bbhash: FTBFS on 32 bit architectures |
ftbfs, sid, trixie |
|
|
| 870060 |
bcftools FTBFS on big endian: 107 tests failed |
ftbfs, upstream |
| 1043668 |
bcftools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1043957 |
bedtools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1010653 |
busco: add autopkgtest to check integration with hmmer and prodigal |
|
|
|
| 1044020 |
clonalframeml: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 935879 |
Update to use CharLS 2.0 |
upstream |
| 988644 |
Defined Term: ISO 2022 IR 87 is not supported |
upstream, confirmed |
| 1039465 |
DICOM/JSON: (0018,1411) DS [-3. ] # 4,1 Exposure Index |
fixed-upstream, upstream |
|
|
| 995966 |
epigrass: epirunner and epidash fail to run due to missing dash modules |
pending |
| 998265 |
epigrass: autopkgtest regression: The 'panel' distribution was not found |
|
|
|
| 1044536 |
fasta3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
upstream, patch |
| 749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
|
| 826048 |
Faulty CMake file impairs compiling against GDCM |
wontfix, moreinfo |
|
|
| 1044467 |
genometools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 983942 |
gromacs: ftbfs with -march=x86-64-v3 |
|
|
|
| 1048106 |
htscodecs: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1049483 |
htscodecs: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 1046620 |
htseq: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047333 |
ivar: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1006686 |
libchipcard-dev: undefined variable in libchipcard-client.pc |
patch, upstream, fixed-upstream |
| 1006687 |
libchipcard6: card.c leaks memory |
patch, upstream |
| 1038261 |
please drop transitional package libchipcard-libgwenhywfar60-plugins from src:libchipcard |
pending |
|
|
| 934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
ftbfs, upstream, help, fixed-upstream |
|
|
| 1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1046060 |
minimap2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047999 |
mmseqs2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 996981 |
multiqc: Link to jquery missing |
|
|
|
| 1048044 |
muscle3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045898 |
nanook: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 891197 |
Please switch to pcre2 |
sid, trixie |
| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
| 984871 |
ncbi-blast+: Missing headers for shared libraries |
|
| 1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
|
|
| 1001387 |
Wishlist: Package Stone of Orthanc Webviewer |
|
|
|
| 1048260 |
pinfish: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048822 |
plink2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047456 |
porechop: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1009156 |
pplacer: Add autopkgtest |
|
| 1024889 |
pplacer: build-depends on dropped package |
|
|
|
| 1046514 |
proteinortho: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048644 |
pychopper: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1032788 |
please drop transitional package python3-dicom from src:pydicom |
|
| 1042612 |
pydicom: FTBFS with Sphinx 7.1, docutils 0.20: TypeError: not all arguments converted during string formatting |
ftbfs |
| 1046585 |
pydicom: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1018448 |
pynn: build-depends on python3-nose or uses it for autopkgtest |
fixed-upstream |
|
|
| 1044074 |
python-biom-format: FTBFS with pandas 2.0 |
|
|
|
| 1045930 |
python-cutadapt: Fails to build source after successful build |
ftbfs, sid, trixie, pending |
|
|
| 1044056 |
python-nanoget: test failure with pandas 2.0 |
|
|
|
| 1046425 |
python-pairix: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1044066 |
python-pyani: FTBFS with pandas 2.0 |
|
|
|
| 1042651 |
python-pybedtools: FTBFS with Sphinx 7.1, docutils 0.20: error: invalid command 'build_sphinx' |
ftbfs |
| 1048006 |
python-pybedtools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047165 |
python-pysam: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1046140 |
python-pyvcf: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1046218 |
python-streamz: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1042594 |
python-tornado: FTBFS with Sphinx 7.1, docutils 0.20: TypeError: Python directive method get_signature_prefix() must return a list of nodes. Return value was 'coroutine '. |
ftbfs |
|
|
| 983517 |
pytorch: Build documentation |
|
|
|
| 1048270 |
quicktree: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048562 |
r-cran-stringi: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045634 |
rna-star: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048951 |
seqan3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1046668 |
seqkit: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045316 |
snakemake: Fails to build source after successful build |
pending, sid, ftbfs, trixie |
|
|
| 1029202 |
snippy: Error when using snpeff 5.1 |
upstream |
|
|
| 1046827 |
snpsift: Fails to build source after successful build |
sid, ftbfs, trixie, pending |
|
|
| 1015668 |
spades: ftbfs with LTO (link time optimization) enabled |
trixie, sid, bookworm |
|
|
| 1005713 |
tensorflow FTBFS; bazel still tries to download during build. |
|
|
|
| 170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 189616 |
jadetex: Japanese JadeTeX |
|
| 234884 |
Cannot generate PDF when callouts are used |
|
| 310148 |
xmlto: pdf output fails with LaTeX errors |
|
| 345637 |
xmltex: behaves as if --force-confold had been given |
|
| 427443 |
provide a documentation index (like tetex had) |
|
| 444084 |
tex4ht: you-on gets extra space |
moreinfo |
| 450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
|
| 468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
| 536380 |
HTML mode is spewing some XML |
wontfix |
| 536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
| 537284 |
Ligature ï¬ becoming ø in avant garde |
|
| 554637 |
tex4ht: Leaves intermediate files |
wontfix |
| 554998 |
Glitches when using hyperref and math mode |
|
| 554999 |
tex4ht: mk4ht should fail when it encounters errors |
|
| 572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
|
| 596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
|
| 604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
|
| 615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
upstream, patch, pending, fixed-upstream |
| 635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
| 659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
|
| 675869 |
make PDF smaller with version1.4 |
|
| 683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
|
| 744309 |
FTBFS Please rebuilt from source flash file |
|
| 764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
|
| 767872 |
tex4ht: htlatex fails without non-zero exit status |
|
| 772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
|
| 774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
|
| 807211 |
texlive-latex-extra: bug in cool.sty; dependency on texlive-fonts-extra |
|
| 862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
|
| 866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
| 877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
|
| 877770 |
Q: Why -doc package depends on tex? |
|
| 916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
|
| 917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
|
| 929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
|
| 930850 |
texlive-latex-extra: Update listings macro separator |
|
| 941823 |
tabu: cell background colours broken |
|
| 953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
|
| 958562 |
texlive-extra-utils: missing man page for pdfcrop |
|
| 974724 |
no useful documentation of pdfjam commands |
wontfix |
| 992269 |
texlive-bibtex-extra: Missing beebe bst stiles like abstract.bst |
pending, fixed-upstream |
| 997024 |
[greek]babel + cleveref + pagenumbering + label = â |
|
| 1008808 |
texlive-games: [chess.sty] Incorrect usage of babel breaks package |
wontfix |
| 1011759 |
texlive-extra-utils: Script pdfjoin has vanished |
wontfix |
| 1019236 |
Why does mere inclusion of pstricks change A4 to letter? |
|
| 1021166 |
texlive-fonts-extra: sourceserifpro doesn't work with xeLaTeX |
|
| 1023586 |
texlive-extra-utils: pythontex won't find python (when on python3) |
|
| 1026789 |
Broken vf files in package? |
|
| 1029325 |
texlive-latex-extra: adequate reports broken-symlink |
|
| 1035857 |
texlive-fonts-extra: broken font symlinks for junicode |
bookworm-ignore |
| 1040158 |
texlive-latex-extra: tex4ebook with mathml prints \lim, limsup etc. in italics |
|
| 1043258 |
texlive-latex-extra-doc: moderncv.tex fails to build |
|
| 1045828 |
texlive-extra: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1049700 |
texlive-extra: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
| 1051497 |
Please upgrade NewTX to 1.726 2023-08-25 |
pending |
| 1051542 |
texlive-extra-utils: a5toa4 fails to generate pdf: No such file or directory |
wontfix |
|
|
| 1047512 |
tnseq-transit: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1049672 |
tnseq-transit: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 1049071 |
tombo: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048043 |
trinculo: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
|
|
| 1048635 |
unicycler: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bullseye, trixie, ftbfs, bookworm, sid |
| 987184 |
vg -- excessive variants built, and not tested |
|
| 1013061 |
vg: ftbfs with GCC-12 |
bookworm, sid, trixie, ftbfs |
| 1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, bookworm, trixie |
| 1043312 |
vg: Replace transitional bsdmainutils |
|
|
|
| 348845 |
please provide a male character as well |
upstream |
| 359991 |
Please add 'daemon' mode |
|
| 371826 |
new exercises |
upstream |
| 388570 |
option for less disk intensity |
upstream |
| 533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
|
| 545585 |
workrave: Cant resume after unlocking screen |
|
| 598402 |
workrave: Should count suspend time as pauses |
|
| 632232 |
workrave: Changing sound options has no effect |
|
| 695344 |
Installs gobject-introspection / library files into system wide paths |
|
| 783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
|
| 789044 |
workrave: lock was blocked by another application |
|
| 804170 |
workrave: Workrave resets system volume levels |
|
| 829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
|
| 843563 |
Workrave applet unusable |
|
| 853933 |
workrave: segfault when trying to start under wayland |
upstream |
| 911054 |
workrave: desktop instability in multimonitor (3) setup |
|
| 921765 |
workrave: occasionally runs into false activity detection |
|
| 943477 |
workrave: multiple overlaying popups in multimonitor setup |
|
| 980873 |
workrave: Break warning window grabs keyboard focus on Wayland |
|
| 988064 |
workrave: applet does not display timer after screen lock |
|
| 1052115 |
workrave-gnome: needs update for GNOME Shell 45 |
sid, trixie, upstream |
|
|
| 1045984 |
wtdbg2: Fails to build source after successful build |
ftbfs, sid, trixie |
Open bugs in suggested packages
1 important, 3 normal
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
| 1018312 |
bcbio: build-depends on python3-nose or uses it for autopkgtest |
|
|
|
| 1044072 |
python-anndata: FTBFS with pandas 2.0 |
|
|
|
| 1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
Done bugs
|
|
| 1043946 |
bbmap: Fails to build source after successful build |
trixie, ftbfs, sid |
|
|
| 1043803 |
busco: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 989108 |
dcmtk-doc: broken symlink: /usr/share/doc/dcmtk-doc/html/jquery.js -> ../../../javascript/jquery/jquery.js |
|
| 990134 |
dcmtk: legacy conffiles leftover |
|
| 990135 |
dcmtk: leftovers after package purge |
|
| 1038776 |
dcmtk: fails to purge: rm: cannot remove '/var/lib/dcmtk/db/STORESCP': Is a directory |
|
|
|
| 1044918 |
drmaa: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1044381 |
fastani: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
|
|
| 1046491 |
nanofilt: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045411 |
nanolyse: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045689 |
pairtools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047550 |
paleomix: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048745 |
parallel-fastq-dump: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047497 |
plip: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045704 |
poretools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045731 |
pycoqc: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1046256 |
pynn: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045711 |
python-cooler: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045844 |
python-depinfo: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045167 |
python-etelemetry: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1049164 |
python-gffutils: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048906 |
python-nanoget: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1046066 |
python-nanomath: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1044070 |
python-pauvre: FTBFS with pandas 2.0 |
confirmed |
| 1045723 |
python-pauvre: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1049056 |
python-questplus: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045932 |
python-tinyalign: Fails to build source after successful build |
trixie, sid, ftbfs |
|
|
| 1049237 |
python-tornado: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048621 |
python3-typed-ast: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 994423 |
pytorch: Baseline violation on armhf |
bullseye, sid, bookworm, ftbfs |
| 1024903 |
pytorch: CVE-2022-45907: torch.jit.annotations.parse_type_line prone to command injection |
fixed-upstream, upstream, security |
| 1031687 |
libtorch-dev: ATEN_INCLUDE_DIR in ATenConfig.cmake uses build path |
|
| 1035458 |
libtorch-dev: broken symlinks: /usr/lib/x86_64-linux-gnu/libcaffe2_*.so -> libcaffe2_*.so.1.13 |
|
| 1037824 |
pytorch: ftbfs with GCC-13 |
sid, experimental, ftbfs, trixie |
| 1050175 |
Missing symbol when importing torch |
|
| 1051258 |
pytorch2 ftbfs on ppc64el |
patch, trixie, sid, fixed-upstream |
| 1051828 |
pytorch: needs-root for autopkgtests? |
|
|
|
| 1045458 |
q2-quality-filter: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047583 |
qcat: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1049017 |
ragout: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048855 |
seirsplus: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1039561 |
seqan3's autopkg tests fail to build |
sid, trixie |
| 1041371 |
seqan3 autopkg test fails |
sid, trixie |
|
|
| 976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
sid, bookworm, trixie, bullseye, ftbfs |
| 1052315 |
FTBFS: missing libzstd-dev build dependency |
patch |
|
|
| 1049912 |
Please upgrade soul to v3.0 or higher |
|
| 1052048 |
texlive-bibtex-extra: Can't generate bibliography since last upgrade at trixie |
|
|
|
| 1046190 |
tiddit: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1031192 |
toil: FTBFS (The job JobClass is requesting 2.0 cores) |
ftbfs |
| 1047298 |
toil: Fails to build source after successful build |
sid, ftbfs, trixie |
|
|
| 1048383 |
umap-learn: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047424 |
uncalled: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 955965 |
workrave: Depends on deprecated dbus-glib |
bullseye, sid, bookworm |
| 1050303 |
extension no longer works with Gnome 44 |
|
|
|
| 1047712 |
yanagiba: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047876 |
yanosim: Fails to build source after successful build |
ftbfs, sid, trixie |
|
