Summary
Bugs of task
covid-19
Total bugs:
180
Open bugs:
136
Fixed bugs:
44
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
1 |
0 |
| serious |
7 |
1 |
| important |
30 |
1 |
| normal |
64 |
0 |
| minor |
12 |
0 |
| wishlist |
19 |
1 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1317)*
Open bugs in dependent packages
1 grave, 7 serious, 30 important, 64 normal, 12 minor, 19 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
| 1000577 |
abyss: autopkgtest regression on armhf and i386: Floating point exception |
upstream |
|
|
| 819617 |
FTBFS: any-i386 - floating point idiosyncracies |
bullseye, buster, ftbfs, sid, stretch |
| 860682 |
bcftools: FTBFS on i386: Test failures |
bullseye, buster, ftbfs, sid, stretch |
| 860704 |
python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1) |
bullseye, buster, ftbfs, sid, stretch |
| 870060 |
bcftools FTBFS on big endian: 107 tests failed |
ftbfs, upstream |
|
|
| 697073 |
dcmtk: dcmdjpeg fails to decode a lossless JPEG |
confirmed, upstream |
| 718557 |
dcmtk: Missing transition in dcmqrscp |
upstream, wontfix |
| 730610 |
C-STORE SCU not working with JPIP Transfer Syntax |
confirmed, upstream |
| 748403 |
Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
confirmed, fixed-upstream, patch, upstream |
| 935879 |
Update to use CharLS 2.0 |
upstream |
| 987972 |
dcmtk user/group |
|
| 988644 |
Defined Term: ISO 2022 IR 87 is not supported |
confirmed, upstream |
| 989108 |
dcmtk-doc: broken symlink: /usr/share/doc/dcmtk-doc/html/jquery.js -> ../../../javascript/jquery/jquery.js |
|
| 990134 |
dcmtk: legacy conffiles leftover |
|
| 990135 |
dcmtk: leftovers after package purge |
|
| 999887 |
dcmtk FTCBFS: uses TRY_RUN check for signedness of char |
fixed-upstream, upstream |
|
|
| 995966 |
epigrass: epirunner and epidash fail to run due to missing dash modules |
|
| 998265 |
epigrass: autopkgtest regression: The 'panel' distribution was not found |
|
|
|
| 731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
patch, upstream |
| 749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
|
| 826048 |
Faulty CMake file impairs compiling against GDCM |
moreinfo, wontfix |
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 983942 |
gromacs: ftbfs with -march=x86-64-v3 |
|
|
|
| 762353 |
libaqbanking-data: Missing sentence to translate |
l10n |
|
|
| 934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
fixed-upstream, ftbfs, help, upstream |
|
|
| 996981 |
multiqc: Link to jquery missing |
|
|
|
| 891197 |
Please switch to pcre2 |
|
| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
| 984871 |
ncbi-blast+: Missing headers for shared libraries |
|
|
|
| 1000782 |
plink2: autopkgtest regression: Segmentation fault |
|
|
|
| 965361 |
python-cooler: please make the build reproducible |
patch, pending |
| 979625 |
autopkgtest: ModuleNotFoundError (ipytree) and AssertionError |
|
| 1000814 |
python-cooler: 10 test failures with pandas 1.3: TypeError: 'IOHandles' object is not subscriptable |
|
|
|
| 860158 |
python-pbcore: prints warnings with recent h5py on ppc64el |
|
| 919052 |
python-pbcore: some docs for pbcore are not found |
|
|
|
| 995259 |
python-pybedtools: please make the build reproducible |
fixed-upstream, patch |
|
|
| 987289 |
python-bz2file: no longer useful since Python 3.3 |
|
|
|
| 998854 |
undefined symbol: _PyUnicode_DecodeUnicodeEscape |
bookworm, fixed-upstream, sid, upstream, wontfix |
|
|
| 983517 |
pytorch: Build documentation |
|
| 994423 |
pytorch: Baseline violation on armhf |
bookworm, ftbfs, pending, sid |
| 995360 |
pytorch: autopkgtest regression: fft: ATen not compiled with MKL support |
|
| 997931 |
libtorch-dev: Caffe2Targets.cmake is broken |
|
|
|
| 983749 |
The autopkgtest test depends are not available on s390x |
|
|
|
| 970404 |
shovill: Please provide autopkgtest |
|
|
|
| 853113 |
spades: Fails to build with unhelpful error message in a "low" memory machine |
|
| 976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid |
|
|
| 170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 189616 |
jadetex: Japanese JadeTeX |
|
| 234884 |
Cannot generate PDF when callouts are used |
|
| 310148 |
xmlto: pdf output fails with LaTeX errors |
|
| 345637 |
xmltex: behaves as if --force-confold had been given |
|
| 427443 |
provide a documentation index (like tetex had) |
|
| 444084 |
tex4ht: you-on gets extra space |
moreinfo |
| 450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
|
| 468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
| 536380 |
HTML mode is spewing some XML |
|
| 536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
| 537284 |
Ligature ï¬ becoming ø in avant garde |
|
| 550381 |
tex4ht: Creates invalid html document |
|
| 554637 |
tex4ht: Leaves intermediate files |
wontfix |
| 554998 |
Glitches when using hyperref and math mode |
|
| 554999 |
tex4ht: mk4ht should fail when it encounters errors |
|
| 572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
|
| 596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
|
| 604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
|
| 615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
fixed-upstream, patch, pending, upstream |
| 635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
| 637127 |
biblatex: Version 1.6-1 breaks "refsection=part" functionality |
|
| 659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
|
| 670040 |
pdfannotextractor & pax do not work at all |
patch |
| 675869 |
make PDF smaller with version1.4 |
|
| 683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
|
| 697728 |
pdfjam: No --no-landscape with --nup possible |
|
| 742276 |
pdfannotextractor & pax do not work at all |
patch |
| 744309 |
FTBFS Please rebuilt from source flash file |
|
| 764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
|
| 767872 |
tex4ht: htlatex fails without non-zero exit status |
|
| 772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
|
| 774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
|
| 792676 |
libpdfbox-java: pdfannotextractor.pl fails to find org.pdfbox.cos.ICOSVisitor class |
patch |
| 801505 |
texlive-latex-extra: complaint about weong file in dpkg trigger |
|
| 807211 |
texlive-latex-extra: bug in cool.sty; dependency on texlive-fonts-extra |
|
| 862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
|
| 866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
| 877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
|
| 877770 |
Q: Why -doc package depends on tex? |
|
| 899413 |
texlive-latex-extra: beamerthemeAachen.sty is missing package tangocolors |
|
| 916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
|
| 917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
|
| 929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
|
| 930850 |
texlive-latex-extra: Update listings macro separator |
|
| 941823 |
tabu: cell background colours broken |
|
| 947064 |
texlive-fonts-extra: fourier-orns.sty broken, docs using the Fourier font no longer compile |
|
| 953072 |
texlive-fonts-extra: NotoColorEmoji.ttf is included in 3 Debian packages |
|
| 953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
|
| 958562 |
texlive-extra-utils: missing man page for pdfcrop |
|
| 974724 |
no useful documentation of pdfjam commands |
wontfix |
| 987778 |
texlive-latex-extra: fails to declare dependency on libspreadsheet-parseexcel-perl |
|
| 990360 |
texlive-publishers: update revtex to v4.2 |
fixed-upstream |
| 990494 |
texlive-latex-extra: missing dependency on texlive-science for invoice.sty |
|
| 992269 |
texlive-bibtex-extra: Missing beebe bst stiles like abstract.bst |
|
| 997024 |
[greek]babel + cleveref + pagenumbering + label = â |
|
|
|
| 980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
|
|
| 976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, ftbfs, sid |
| 987184 |
vg -- excessive variants built, and not tested |
|
|
|
| 348845 |
please provide a male character as well |
upstream |
| 359991 |
Please add 'daemon' mode |
|
| 371826 |
new exercises |
upstream |
| 388570 |
option for less disk intensity |
upstream |
| 533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
|
| 545585 |
workrave: Cant resume after unlocking screen |
|
| 598402 |
workrave: Should count suspend time as pauses |
|
| 632232 |
workrave: Changing sound options has no effect |
|
| 695344 |
Installs gobject-introspection / library files into system wide paths |
|
| 783845 |
workrave: Pulls in a lot of libraries from xfce4 |
|
| 783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
|
| 789044 |
workrave: lock was blocked by another application |
|
| 802511 |
Please split off gnome-shell extension into separate package with proper dependencies |
|
| 804170 |
workrave: Workrave resets system volume levels |
|
| 829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
|
| 843563 |
Workrave applet unusable |
|
| 853933 |
workrave: segfault when trying to start under wayland |
upstream |
| 911054 |
workrave: desktop instability in multimonitor (3) setup |
|
| 921765 |
workrave: occasionally runs into false activity detection |
|
| 943477 |
workrave: multiple overlaying popups in multimonitor setup |
|
| 955965 |
workrave: Depends on deprecated dbus-glib |
bookworm, bullseye, sid |
| 967815 |
workrave: depends on deprecated GTK 2 |
|
| 980873 |
workrave: Break warning window grabs keyboard focus on Wayland |
|
| 988064 |
workrave: applet does not display timer after screen lock |
|
Open bugs in suggested packages
1 serious, 1 important, 1 wishlist
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
|
|
| 1001020 |
python-anndata: FTBFS with sklearn 1.0.1-1: ModuleNotFoundError: No module named 'sklearn.utils.testing' |
bookworm, sid |
|
|
| 993623 |
python-seqcluster: Switch to myst-parser instead of recommonmark |
|
Done bugs
|
|
| 986203 |
bustools: Please provide autopkgtest |
newcomer |
|
|
| 999556 |
cwltool is missing the dependency on python3-distutils |
|
|
|
| 1000317 |
cyvcf2: FTBFS with Python 3.10 |
ftbfs, patch |
|
|
| 637687 |
libdcmtk2-dev: Dcmtk headers cause compile failure |
upstream |
| 675448 |
dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file |
confirmed, fixed-upstream, upstream |
| 714943 |
getscu stops working with dcmtk 3.6.0 |
upstream, wontfix |
| 715029 |
DICOM upper layer FSM bug |
confirmed, fixed-upstream, patch, upstream |
| 724886 |
IHE Radiology Technical Framework, Volume 2 (RAD TF-2) |
upstream, wontfix |
| 731433 |
iteration 9396u invokes undefined behavior [-Waggressive-loop-optimizations] |
upstream |
| 810926 |
dcmtk-www: missing file name extension of /etc/apache2/conf-available/dcmtk |
wontfix |
| 859202 |
warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated |
fixed-upstream |
| 900196 |
dcmtk: wrongly assumes that CMAKE_SYSTEM_VERSION to be non-empty |
patch, upstream |
| 981326 |
dcmtk 3.6.6 has been released |
|
| 988417 |
dcmtk: Memory leak in OFCharacterEncoding::selectEncoding |
|
| 993025 |
dcm2xml.dtd>dumppat.txt are not installed |
|
| 1000220 |
dicomscope: error: cannot bind non-const lvalue reference of type âstd::__cxx11::list<int, std::allocator<int> >::const_iterator&â to an rvalue of type âstd::__cxx11::list<int, std::allocator<int> >::const_iteratorâ |
bookworm, ftbfs, patch, sid, upstream |
|
|
| 998143 |
gatb-core breaks discosnp autopkgtest: Segmentation fault |
bookworm, sid |
| 1000413 |
discosnp: autopkgtest regression: Segmentation fault |
|
|
|
| 939670 |
gdcm-doc: depends on cruft package. |
bullseye, sid |
|
|
| 1000221 |
ginkgocadx: error: âOFIteratorâ was not declared in this scope; did you mean âOF_errorâ? |
bookworm, ftbfs, sid, wontfix |
|
|
| 921784 |
gromacs: unhelpful error message from mpicxx.openmpi |
unreproducible |
| 997067 |
gromacs: FTBFS: ! LaTeX Error: File `tgtermes.sty' not found. |
bookworm, ftbfs, sid |
|
|
| 997884 |
libgclib breaks cdbfasta autopkgtest: ABI breakage? |
bookworm, confirmed, sid |
|
|
| 998420 |
minia: reproducible builds: Embeds kernel version |
patch |
|
|
| 996559 |
minimap2 FTBFS on !x86 |
ftbfs |
|
|
| 1000358 |
ncbi-blast+: Please remove the mbedtls version check |
|
|
|
| 999841 |
odil: needlessly overrides d-shlibs for libboost_log |
|
|
|
| 1000222 |
orthanc: DCMTK was configured to use C++14 features, but your compiler does not or was not configured to provide them. |
bookworm, confirmed, ftbfs, patch, sid, upstream |
|
|
| 981753 |
COPY cannot find "/usr/share/nodejs/axios/dist/axios.min.js" |
patch, wontfix |
|
|
| 1000337 |
pairtools: FTBFS with Python 3.10 |
patch, upstream |
|
|
| 989328 |
libpicard-java-doc: broken symlink: /usr/share/doc/libpicard-java/api/jquery/external/jquery/jquery.js -> ../../../../../../javascript/jquery/jquery.min.js |
|
| 989961 |
picard-tools: Wrong classpath in PicardCommandLine |
patch |
|
|
| 1000423 |
python-biom-format: FTBFS with Python 3.10 - Test failures |
ftbfs, upstream |
|
|
| 1000359 |
FTBFS: test failure: External MBEDTLS version mismatch |
|
|
|
| 995258 |
python-pairix: please make the build reproducible |
patch |
| 999381 |
python-pairix ftbfs with Python 3.10 (test failures) |
ftbfs, patch |
|
|
| 949974 |
Finish hangs after flush |
|
| 988772 |
python-tornado-doc: broken symlink: /usr/share/doc/python-tornado/rst -> html/_sources |
|
| 1000287 |
python-tornado FTBFS with Python 3.10 |
bookworm, ftbfs, sid |
|
|
| 999396 |
python3-typed-ast ftbfs with Python 3.10 (and 3.9.8) |
ftbfs |
|
|
| 984304 |
pytorch: ftbfs with GCC-11 |
bookworm, ftbfs, sid |
|
|
| 996138 |
ruby-bio: FTBFS with ruby3.0: ERROR: Test "ruby3.0" failed: Error: test_target(Bio::TestSiRNAPair): NoMethodError: undefined method `subseq' for "cuuucggugcggacguaaggagu":String |
bookworm, ftbfs, sid |
|
|
| 996280 |
seqan3: autopkgtest needs update for new version of gcc-defaults |
bookworm, sid |
|
|
| 997000 |
snakemake: please make the build reproducible |
patch |
|
