Summary
Image analysis
Debian Science image analysis packages
This metapackage will install Debian Science packages related to
scientific image acquisition. This might be used in several
sciences (as for instance science-dataacquisition, science-viewing
and science-typesetting).
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Science
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Science mailing list
Links to other tasks
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Debian Science Image analysis packages
Official Debian packages with high relevance
Gpiv
GUI-Programm für Particle Image Velocimetry
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Versions of package gpiv |
Release | Version | Architectures |
squeeze | 0.6.1-2 | amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc |
wheezy | 0.6.1-2 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
jessie | 0.6.1-2.3 | amd64,armel,armhf,i386 |
Debtags of package gpiv: |
uitoolkit | gtk |
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License: DFSG free
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Gpiv ist ein GUI-Programm für die Particle Image Velocimetry. Es verwendet
GTK/GNOME-Bibliotheken und gibt einen schnellen Überblick über die
eingestellten Parameter der Messprozedur und ermöglicht die einfache
Anpassung der Parameter, sowohl einfaches als auch mehrfaches Ausführen der
Messungen, Visualisieren und Anzeigen der Ergebnisse. Die mit Gpiv
durchführbaren Prozesse sind:
Bildbearbeitung, wie sie für PIV typischerweise benötigt wird.
Auswertung der Bilder, die zu Abschätzungen der Teilchenbewegungen führt.
Überprüfen der Daten auf Ausreißer, den »Peak-Locking«-Effekt und der
Geschwindigkeitsgradienten im ausgewerteten Bereich.
Datenweiterverarbeitung: Datenmanipulation, räumliches und zeitliches
Skalieren, um ein Geschwindigkeitsfeld aus dem PIV-Daten zu erhalten;
Berechnung des räumlichen Mittels, der Wirbelstärke und Deformation.
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Gpivtools
command line programs for Particle Image Velocimetry
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Versions of package gpivtools |
Release | Version | Architectures |
squeeze | 0.6.0-1 | amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc |
wheezy | 0.6.0-3 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
jessie | 0.6.0-3.1 | amd64,armel,armhf,i386 |
Debtags of package gpivtools: |
interface | commandline |
role | program |
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License: DFSG free
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A collection of programs for images that are generated
during a Particle Image Velocimetry (PIV) experiment. This is a
technique to obtain the velocity field of a fluid flow quantitatively
and is performed by tracking tracer particles that have been seeded
to a fluid. The technique is also applied for observing deformations
at surfaces of (solid) bodies. The package contains:
- an image processing program for typical filtering and manipulation
routines that may be convenient for PIV.
- an image interrogation program resulting into estimators of particle
image displacements.
- validation programs to test on outliers, peak-locking effect and
velocity gradients.
- post-processing programs for data manipulation (flipping, rotation
etc), spatial and time scaling, calculation of spatial averages and
derivative quantities from the PIV data, like vorticity and strain.
- miscellaneous programs and scripts to perform image format conversion,
batch-processing, pipeline processing (image evaluation, validation and
post-processing at once), calculation of time averages from a series
of PIV data sets, data-visualization and data-manipulation.
All programs start with gpiv_.
This package contains all files used by gpivtools and gpivtools-mpi,
like the man pages.
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Gwyddion
Werkzeug zur Visualisierung und Analyse von Daten der Rastersondenmikroskopie
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Versions of package gwyddion |
Release | Version | Architectures |
sid | 2.57-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
squeeze | 2.20-1 | amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc |
wheezy | 2.28-2 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
jessie | 2.38-2 | amd64,armel,armhf,i386 |
stretch | 2.47-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 2.52-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
bullseye | 2.57-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
upstream | 2.58 |
Debtags of package gwyddion: |
field | physics |
interface | x11 |
role | program |
science | visualisation |
scope | application |
uitoolkit | gtk |
use | analysing, viewing |
works-with | image, image:raster |
x11 | application |
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License: DFSG free
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Gwyddion ist ein modular aufgebautes Programm zur Visualisierung und Analyse
von Daten der Rastersondenmikroskopie (Scanning Probe Microscopy - SPM). Es
ist vor allem zur Analyse von Höhenfelddaten gedacht, welche durch
Mikroskopietechniken wie
- Rasterkraftmikroskopie (Atomic Force Microscopy - AFM),
- Magnetkraftmikroskopie (Magnetic Force Microscopy - MFM),
- Rastertunnelmikroskopie (Scanning Tunneling Microscopy - STM),
- Optische Rasternahfeldmikroskopie (Near-field Scanning Optical
Microscopy - SNOM oder NSOM)
oder andere erhalten wurden. Es kann jedoch zur Analyse beliebiger
Höhenfeld- und Bilddaten genutzt werden.
Dieses Paket beinhaltet das Hauptprogramm und seine Module. Es umfasst
außerdem ein Programm für GNOME (und Xfce), welches Vorschauansichten für
alle Gwyddion bekannten Dateitypen erstellt.
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Limereg
Lightweight Image Registration
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Versions of package limereg |
Release | Version | Architectures |
sid | 1.4.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.4.1-4 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
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Command line application for image registration.
Automatically finds an optimal alignment of two input images, that makes both
most similar to each other. Outputs the rigid transformation parameters
(shift and rotation) and/or the registered (transformed/aligned) image.
Fast algorithm based on analytical derivative based optimization with a
multilevel approach and without expensive sparse-matrices.
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Teem-apps
Tools to process and visualize scientific data and images - command line tools
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Versions of package teem-apps |
Release | Version | Architectures |
wheezy | 1.11.0~svn5226-1 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
jessie | 1.11.0~svn5226-1 | amd64,armel,armhf,i386 |
stretch | 1.11.0~svn6057-1.1 | amd64,armel,armhf,i386,mips,mipsel,s390x |
sid | 1.12.0~20160122-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 1.12.0~20160122-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
squeeze | 1.10.0.dfsg1-2 | amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc |
Debtags of package teem-apps: |
interface | commandline |
role | program |
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License: DFSG free
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Teem is a coordinated group of libraries for representing, processing, and
visualizing scientific raster data. Teem includes command-line tools that
permit the library functions to be quickly applied to files and streams,
without having to write any code. The most important and useful libraries in
Teem are:
- Nrrd (and the unu command-line tool on top of it) supports a range of
operations for transforming N-dimensional raster data (resample, crop,
slice, project, histogram, etc.), as well as the NRRD file format for
storing arrays and their meta-information.
- Gage: fast convolution-based measurements at arbitrary point locations in
volume datasets (scalar, vector, tensor, etc.)
- Mite: a multi-threaded ray-casting volume render with transfer functions
based on any quantity Gage can measure
- Ten: for estimating, processing, and visualizing diffusion tensor fields,
including fiber tractography methods.
This package contains some simple command-line tools which provide fast and
easy access to the functionality in the various libraries.
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