Debian Science Project
Summary
Bugs of task chemistry
Total bugs: 88
Open bugs: 82
Fixed bugs: 6
Links to other tasks
Tasks overview
Biology 14 (194)
Chemistry 82 (915)
Data acquisition 52 (215)
Data management 52 (465)
Devices 6 (105)
Economics 32 (117)
Engineering 89 (968)
Engineering-dev 45 (535)
Geography 72 (475)
Geometry 5 (51)
Linguistics 96 (401)
Logic 39 (261)
Machine learning 53 (450)
Mathematics 250 (2080)
Mathematics-dev 176 (1714)
Meteorology 79 (560)
Meteorology-dev 191 (809)
Nanoscale physics 324 (2360)
Physics 81 (885)
Physics-dev 34 (377)
Presentation 90 (741)
Psychophysics 20 (228)
Robotics 122 (607)
Robotics-dev 27 (370)
Simulations 41 (487)
Social 0 (0)
Statistics 59 (410)
Tools 21 (140)
Typesetting 291 (1932)
Viewing 298 (1723)
Viewing-dev 56 (499)
Workflow 28 (207)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 11 0
important 17 0
normal 33 0
minor 11 0
wishlist 10 0

Summary bugs page of task Chemistry

Immediately looking into bugs of the dependencies of this task is advised (915)*

Open bugs in dependent packages

11 serious, 17 important, 33 normal, 11 minor, 10 wishlist
apbs (1) Homepage: http://www.poissonboltzmann.org/ Vcs Debichem Team
1034627 apbs: compile with PBAM and PBSAM support
avogadro (1) Homepage: https://avogadro.cc/ Vcs Debichem Team
1127605 avogadro: corrupted display on gnome wayland
bkchem (1) Homepage: https://bkchem.zirael.org Vcs Debichem Team
1003405 consider devendoring pmw module
cdk (1) Homepage: https://cdk.github.io/ Vcs Debian Java Maintainers
1081606 cdk: run upstream tests during build help
chemical-mime-data (3) Homepage: https://github.com/dleidert/chemical-mime Vcs Debichem Team
420795 chemical-mime-data: Unknown media type in type 'chemical/x-*' fixed-upstream, wontfix
684017 chemical-mime-data: unowned files after purge: /usr/share/mime/chemical/x-*.xml
1117821 chemical-mime-data: suggests gnome-mime-data which is not in unstable
chemical-structures (1) Homepage: https://chem-file.sourceforge.net/#:~:text=The%20Chemical%20Structures%20Project%20aims,melting%20point%20or%20InChI%20code. Vcs Debian Science Maintainers
1112175 chemical-structures: recommends iceweasel, iceape which is not in unstable
chemtool (1) Homepage: http://ruby.chemie.uni-freiburg.de/~martin/chemtool/ Vcs Debichem Team
967291 chemtool: depends on deprecated GTK 2 forky, sid
cp2k (3) Homepage: http://www.cp2k.org Vcs Debichem Team
948909 cp2k: test failure on armhf and i386 with libint2
1021057 cp2k autopkgtest times outs on armel
1087987 cp2k: build-depends on libelpa-dev which is no longer available on 32-bit architectures forky, sid, trixie
easychem (5) Homepage: http://easychem.sourceforge.net Vcs Debichem Team
705980 easychem application hangs on File -> Export moreinfo, unreproducible
786826 easychem: [INTL:nl] Dutch po file for the easychem package l10n, patch
798682 unknown deveice - epswrite patch
798684 unknown deveice - epswrite patch
967322 easychem: depends on deprecated GTK 2 forky, sid
feff85exafs (3) Homepage: https://github.com/xraypy/feff85exafs Vcs Debian Science Maintainers
1044195 feff85exafs: Fails to build source after successful build forky, ftbfs, sid, trixie
1105360 feff85exafs: FTBFS with make --shuffle=reverse: ar: json_module.o: No such file or directory forky, ftbfs, sid, trixie
1119412 feff85exafs: please build using the default build flags
galculator (5) Homepage: http://galculator.mnim.org/ Vcs Dmitry Smirnov
210696 galculator: If more than one +-*/ key is pressed after a number the last selected should override the previous upstream
671129 galculator: More difficulties entering shift operations upstream
737384 Should use GTK+2 useful for LXDE and Xfce users patch, wontfix
790900 many GLib-GObject-WARNINGs
922913 galculator: % does not work in any way moreinfo
garlic (2) Homepage: http://www.zucic.org/garlic/ Vcs Debichem Team
715937 [Mayhem] Bug report on garlic: garlic crashes with exit status 139
749656 garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour
gausssum (2) Homepage: http://gausssum.sourceforge.net Vcs Debichem Team
1035144 gausssum: please add autopkgtests (to add coverage for python3-numpy)
1036517 gausssum: please add autopkgtests (to add coverage for python3-matplotlib)
gnome-chemistry-utils (4) Homepage: http://www.nongnu.org/gchemutils/ Vcs Debichem Team
932425 gchempaint: Dashed bonds in CDX files inverted
1112408 gnome-chemistry-utils: Build-Depends on unmaintained gnome-common forky, sid
1116330 src:gnome-chemistry-utils: unsatisfied build dependency in testing: libosmesa6-dev forky, sid
1118669 gnome-chemistry-utils: autopkgtests intermittently time out, especially on s390x, and don't seem to really test the package
gromacs (2) Homepage: https://www.gromacs.org/ Vcs Debichem Team
644397 Provide runtime detection for CPU SIMD capabilities upstream
983942 gromacs: ftbfs with -march=x86-64-v3
jmol (2) Homepage: https://jmol.sourceforge.net/ Vcs Debichem Team
872418 jmol: Weblinks in Help do not work
1129935 jmol: please drop the "quilt" build-depency, this is a '3.0 (quilt)' package
katomic (1) Homepage: https://apps.kde.org/katomic/ Vcs Debian Qt/KDE Maintainers
1129130 katomic: FTBFS: /<<PKGBUILDDIR>>/src/levelset.h:119:36: error: field 'm_levelCache' has incomplete type 'QHash<int, LevelData*>' forky, ftbfs, sid
mopac7 (1) Homepage: http://sourceforge.net/projects/mopac7 Vcs Debichem Team
580828 libmopac7-1gf: Segmentation fault in lm7_ini_full_xyz()
mpqc (8) Homepage: http://www.mpqc.org Vcs Debichem Team
193616 mpqc has many missing libs in the linkages upstream
725486 mpqc: Aborts with SIGABRT if executed without further arguments
903733 mpqc: Unescaped left brace in regex is deprecated
1049570 mpqc: Fails to build binary packages again after successful build forky, ftbfs, sid, trixie
1075293 mpqc: ftbfs with GCC-14 forky, ftbfs, sid, trixie
1077120 mpqc: needs rebuild against dh-elpa >=2.1.5 forky, patch, sid, trixie
1089783 mpqc: uninstallable since transition to openmpi version 5
1110993 mpqc: Update to v4 upstream
openbabel (11) Homepage: https://openbabel.org Vcs Debichem Team
588248 Provide library for static linkage (libopenbabel.a)
716203 [Mayhem] Bug report on openbabel: obminimize crashes with exit status 139
716567 [Mayhem] Bug report on openbabel: obprobe crashes with exit status 139
823890 python-openbabel: doc-base error: openbabel and pybel already define html format
850546 openbabel-gui: Please add a desktop file for obgui
1046720 openbabel: Fails to build source after successful build forky, ftbfs, sid, trixie
1059277 openbabel: CVE-2022-37331 CVE-2022-41793 CVE-2022-42885 CVE-2022-43467 CVE-2022-43607 CVE-2022-44451 CVE-2022-46280 CVE-2022-46289 CVE-2022-46290 CVE-2022-46291 CVE-2022-46292 CVE-2022-46293 CVE-2022-46294 CVE-2022-46295 security, upstream
1073561 openbabel: FTBFS: failing tests test_tautomer_2[27] forky, ftbfs, sid, trixie, unreproducible
1107330 openbabel: autopkgtest uses large amounts of memory
1116462 openbabel: CVE-2025-10994 CVE-2025-10995 CVE-2025-10996 CVE-2025-10997 CVE-2025-10998 CVE-2025-10999 CVE-2025-11000 security, upstream
1129566 openbabel: CVE-2026-2704 CVE-2026-2705 CVE-2026-3408 security, upstream
openfoam (11) Homepage: https://openfoam.com Vcs Debian Science Maintainers
845267 libopenfoam: libscotchDecomp.so.0.1.0 is GPL-licensed but links with GPL-incompatible library
850065 openfoam: Build runs way more parallel processes than specified by DEB_BUILD_OPTIONS
917985 openfoam: Openfoam should not build (nor skip) dummy libraries
918112 openfoam should not massively pollute /usr/{bin,lib} namespaces
919711 openfoam: autopkgtest regression
920585 openfoam build doesn't respect -j <n>
973574 package openfoam does not contain foamEtcFile
1075972 openfoam: Unnecessary build dependency on libcgal-dev
1097519 openfoam: ftbfs with GCC-15 forky, ftbfs, sid
1127244 openfoam: libboost-system-dev package is obsolete with boost 1.89 and newer forky, sid
1128475 openfoam: CVE-2025-61982 security, upstream
pymol (3) Homepage: https://www.pymol.org Vcs Debichem Team
709306 pymol: Crashes when running within xrdp/vnc (no 3D support)
765794 Race condition when running scripts in "stdin" mode
783653 pymol: Segmentation fault immediately after loading pdb
python-pymzml (2) Homepage: https://github.com/pymzml/pymzML Vcs The Debichem Group
1035209 python-pymzml: please add autopkgtests (to add coverage for python3-numpy)
1086925 python-pymzml: Python SyntaxWarning
qutemol (2) Homepage: http://qutemol.sourceforge.net/ Vcs Debichem Team
642084 qutemol: Cannot start the program
939033 qutemol: Uses GifQuantizeBuffer - stops working with newer giflib
rasmol (1) Homepage: http://rasmol.org Vcs Debian Science Maintainers
1097771 rasmol: ftbfs with GCC-15 forky, ftbfs, sid
tandem-mass (1) Homepage: http://www.thegpm.org/TANDEM/ Vcs The Debichem Group
1119583 tandem-mass: please build using the default build flags
xbs (3) Homepage: Not maintained in Vcs Matthew Vernon
716487 [Mayhem] Bug report on xbs: xbs crashes with exit status 139
1007400 xbs: please consider upgrading to 3.0 source format forky, sid, trixie
1119619 xbs: please build using the default build flags
xmakemol (1) Homepage: http://www.nongnu.org/xmakemol/ Vcs Debichem Team
1129802 xmakemol: FTBFS: dh: error: Unknown sequence -O--parallel (choose from: binary binary-arch binary-indep build build-arch build-indep clean install install-arch install-indep) forky, ftbfs, sid

Open bugs in suggested packages

Done bugs

apbs (1) Homepage: http://www.poissonboltzmann.org/ Vcs Debichem Team
1033528 apbs: autopkgtest regression: apbs_tester.py': [Errno 2] No such file or directory bookworm, bookworm-ignore, patch, sid, trixie
cp2k (1) Homepage: http://www.cp2k.org Vcs Debichem Team
1127345 src:cp2k: fails to migrate to testing for too long forky, sid
feff85exafs (1) Homepage: https://github.com/xraypy/feff85exafs Vcs Debian Science Maintainers
1083389 feff85exafs: (build-)depends on deprecated module python3-pkg-resources patch, sid, trixie
gdpc (2) Homepage: https://web.archive.org/web/20180212152753/http://www.frantz.fi/software/gdpc.php Vcs Debian Med Packaging Team
967379 gdpc: depends on deprecated GTK 2 forky, sid, wontfix
1127425 gdpc: libglib2.0-0t64-dbgsym isn't installable for testing migration
schroedinger-maeparser (1) Homepage: https://www.schrodinger.com/maestro Vcs Debian Science Team
1127077 schroedinger-maeparser ftbfs with boost 1.90 forky, ftbfs, patch, sid
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Fri, 06 Mar 2026 16:00:10 -0000