Debian Science Project
Summary
Bugs of task nanoscale-physics-dev
Total bugs: 146
Open bugs: 134
Fixed bugs: 12
Links to other tasks
Tasks overview
Biology 10 (142)
Chemistry 99 (1044)
Data acquisition 69 (489)
Data management 56 (447)
Devices 17 (174)
Economics 28 (154)
Engineering 87 (914)
Engineering-dev 81 (846)
Geography 97 (737)
Geometry 5 (36)
Linguistics 98 (463)
Logic 42 (333)
Machine learning 39 (298)
Mathematics 254 (2221)
Mathematics-dev 197 (1850)
Meteorology 95 (625)
Meteorology-dev 198 (851)
Nanoscale physics 337 (2717)
Physics 82 (840)
Physics-dev 39 (389)
Presentation 80 (666)
Psychophysics 9 (94)
Robotics 110 (462)
Robotics-dev 36 (384)
Simulations 56 (703)
Social 0 (0)
Statistics 52 (319)
Tools 13 (91)
Typesetting 266 (1755)
Viewing 312 (1941)
Viewing-dev 71 (714)
Workflow 47 (428)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 5 1
important 32 2
normal 60 3
minor 14 0
wishlist 12 5

Summary bugs page of task Nanoscale physics development

Immediately looking into bugs of the dependencies of this task is advised (1241)*

Open bugs in dependent packages

5 serious, 32 important, 60 normal, 14 minor, 12 wishlist
abinit (4) Homepage: http://www.abinit.org/ Vcs Debichem Team
988798 abinit-doc: broken symlink: /usr/share/doc/abinit/html/index.md -> guide/new_user.md
1015347 abinit: ftbfs with LTO (link time optimization) enabled sid, trixie
1073088 abinit: build-depends on markdown
1076027 abinit: FTBFS with mpich as default MPI implementation on 32 bit architectures: Error: Type mismatch in argument ‘block_displ’ at (1); passed INTEGER(8) to INTEGER(4) ftbfs
cbflib (2) Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Vcs Debian PaN Maintainers
1041395 libcbf1: Problem with data block name size
1080567 Missing Build-Depends on python3-setuptools sid, trixie
cctbx (2) Homepage: https://github.com/cctbx/cctbx_project Vcs Debian Science Maintainers
1084540 cctbx: removal of Python standard libraries in Python 3.13
1085414 cctbx: Python SyntaxWarning
debian-science (3) Homepage: https://wiki.debian.org/DebianScience/ Vcs Debian Science Team
1030327 science-numericalcomputation: please stop recommending python3-theano as it is being removed
1032638 please drop transitional package science-electronics from src:debian-science
1055339 debian-science: please replace recommendation of src:dolfin by src:fenics-dolfinx
etsf-io (3) Homepage: https://github.com/ElectronicStructureLibrary/libetsf_io Vcs Debian Science Team
978503 etsf-io: uscan fails due to gone download page
1044263 etsf-io: Fails to build source after successful build ftbfs, sid, trixie
1050791 etsf-io: Drop unused libnetcdf-dev build dependency patch
fftw3 (6) Homepage: https://fftw.org Vcs Debian Science Maintainers
942359 Please provide libfftw3-long3 on all platforms
948086 package fftw3 does not install cmake config files
1044274 fftw3: Fails to build source after successful build ftbfs, sid, trixie
1052201 fftw3: baseline violation: Unconditionally enabled NEON for armhf
1054906 fftw3: Please enable avx2 patch
1075985 libfftw3-mpi3 might be misbuilt with MPICH as default ftbfs, sid, trixie
gpyfft (1) Homepage: https://github.com/geggo/gpyfft Vcs Debian Science Maintainers
878349 gpyfft: FTBFS on non-Linux: CLFFT_INCL_DIRS is not defined upstream
gsl (11) Homepage: https://www.gnu.org/software/gsl Vcs Dirk Eddelbuettel
716005 [Mayhem] Bug report on gsl-bin: gsl-histogram crashes with exit status 139
815100 /usr/share/doc/libgsl2/copyright: Small mistakes in the copyright file
822332 libgsl2: typo in package description
862259 libgsl-dev is not Multi-Arch compatible
913539 typo in gsl-randist(1)
960185 libgsl-dev: fails to converge on beta inv for some values
960514 libgsl25: obsolete conflicts/replaces
960515 libgsl25: strict dependency on libgslcblas0 prevents co-installability of different libgslXX versions
987651 install the examples in libgsl-dev
1001589 libgsl25: Can't be upgraded to 2.7+dfsg-2
1044663 gsl: Fails to build source after successful build ftbfs, sid, trixie
hdf5 (23) Homepage: http://hdfgroup.org/HDF5/ Vcs Gilles Filippini
638753 libhdf5-serial-1.8.7: threadsafe memory leaks moreinfo
715959 [Mayhem] Bug report on hdf5-tools: gif2h5 crashes with exit status 139
716008 [Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139
716010 [Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139
716011 [Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139
716012 [Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139
740613 libhdf5-7: Please include support for compression with libaec
748587 Duplicate and conflicting definitions of variable FILENAME upstream
839784 libhdf5-dev: pkg-config file references ONLY the C library
915807 hdf5: CVE-2017-17507 security, upstream
958174 hdf5: please add the hdf5plugins
968559 libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing moreinfo
1023446 libhdf5-openmpi-dev: h5pcc configured as static build
1023820 hdf5: Dependencies not tight enough
1031726 hdf5: CVE-2022-26061 CVE-2022-25972 CVE-2022-25942 security, upstream
1034807 hdf5: CVE-2018-11205 security, upstream
1034838 hdf5: CVE-2019-8396 CVE-2019-8398 security
1040862 hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin
1052250 pkg-config file incorrect for static linking
1063856 hdf5: new upstream release
1067758 Please provide a nojava build profile
1067789 hdf5: diff for NMU version 1.10.10+repack-3.2 patch, pending
1067950 hdf5: diff for NMU version 1.10.10+repack-3.3 patch, pending
hepmc3 (2) Homepage: http://hepmc.web.cern.ch/hepmc/ Vcs Debian Science Maintainers
1049185 hepmc3: Fails to build source after successful build ftbfs, sid, trixie
1064556 hepmc3: FTBFS on i386: 86% tests passed, 2 tests failed out of 14 experimental, ftbfs, sid, trixie
lapack (3) Homepage: https://www.netlib.org/lapack/ Vcs Debian Science Team
354463 Undefined symbols/changed size between lapack and blas
694625 libblas3gf: DGEMV does not handle properly N=0
1086680 lapack FTCBFS: unsatisfiable gfortran+python3 dependencies patch
libccp4 (1) Homepage: https://www.ccp4.ac.uk/ Vcs Debian Science Maintainers
1075155 libccp4: ftbfs with GCC-14 ftbfs, sid, trixie
libxc (3) Homepage: http://www.tddft.org/programs/octopus/wiki/index.php/Libxc Vcs Debichem Team
1035858 libxc9: broken symlink: /usr/share/doc/libxc9/README -> README.md
1047002 libxc: Fails to build source after successful build ftbfs, sid, trixie
1084870 libxc-dev: Missing Fortran Cmake Package config files
mpich (23) Homepage: https://www.mpich.org/ Vcs Debian Science Maintainers
31779 mpich: Clustering multiple CPU archs is not supported
208431 mpich: 2>GB file handling on NFS
215528 mpich: mpirun fails with rsh-redone-client
301551 mpirun is inconvenient on OpenMosix clusters
446883 Compatibility with SLURM
498213 libmpich1.0gf: SIGSEV in MPI_Bcast when the size of the array is>40000
512142 [mpich-bin] tstmachines doesn't handle spaces in path patch
530144 mpich-bin: bashism in /bin/sh script
530145 mpich-mpd-bin: bashism in /bin/sh script
530146 mpich-shmem-bin: bashism in /bin/sh script
561967 Missing header file path in using gfortran
573449 mpich-mpd-bin: /usr/bin/tstmachines.mpich-mpd is a dangling
581172 mpich-shmem-bin: Missing dependency on gawk (for cleanipcs script)
624349 libmpich2-dev: Activates debugging compiler option -g
666071 mpich2: In this version of mpich2, the mpd daemon (and other utilities) are missing.
715286 mpich: maintainer scripts assume #DEBHELPER# only sometimes does something
791676 libmpich-dev: mpicc adds compiler specific flags and fails for older gcc versions
912901 mpich: FTBFS on hppa - testsuite timeout
922848 mpich FTBFS with the Flang Fortran compiler
980943 mpich: mpirun segfaults on s390x
987716 mpich: Missing many manpages
1042412 libmpich-dev: parallel gfortran prog fails with error
1081116 mpich: please update symbols file [PATCH] patch
openmpi (27) Homepage: https://www.open-mpi.org/ Vcs Debian Science Maintainers
524553 openmpi-bin: mpiexec seems to be resolving names on server instead of each node confirmed, upstream
551708 openmpi-bin: Please add support to build with alternative compilers confirmed
576238 libopenmpi-dev: Cannot compile static application confirmed
584699 programs freeze on first MPI op. when run on multihomed IPv6 hosts confirmed, help, upstream
598553 Add support for blocking progress confirmed, help, upstream
732160 openmpi-common: Valgrind suppression file incomplete confirmed, upstream
782578 openmpi: Enable memchecker at least in a variant?
849974 openmpi: not enough slots available
851918 openmpi: MPI_Comm_dup error on s390x, ppc64, sparc64 builds of mpgrafic - maybe from openmpi
910251 libopenmpi3 3.1.2-5 Introduces 15s Delay and hfi_wait_for_device Messages
919335 mpifort (3.1.3-9) infinite loop on hurd reading from stdin
922849 openmpi FTBFS with the Flang Fortran compiler
930243 libopenmpi3: Illegal instruction on amd64 CPU without AVX support
945273 opempi warning on stderr causes autopkg test errors in dependent packages bookworm, bullseye, sid, trixie
954436 openmpi segfault on the stretch(oldstable) distrib
954997 mpirun: reading from stdin more than 64k cause crashes
961108 openmpi: providing 64-bit MPI
983600 libopenmpi-dev: Can not install with multi-arch
1032349 libopenmpi-dev: MPI_Win_create fails with MPI_ERR_WIN for v4.1.0 and ob1 newcomer
1045813 openmpi: Fails to build source after successful build ftbfs, sid, trixie
1049670 openmpi: Fails to build binary packages again after successful build ftbfs, sid, trixie
1057727 openmpi-bin is wrongly marked Multi-Arch: foreign
1077592 openmpi: rebuilding openmpi 4 for ppc64el without UCX
1078026 -lmpi_mpifh does not work
1085509 Rpath used in OpenMPI compiler wrappers
1086209 mpif90.openmpi: Cannot open module file 'mpi.mod' for reading at (1): No such file or directory ftbfs
1086673 libopenmpi3t64: /usr/lib/x86_64-linux-gnu/libmpi_cxx.so.* is missing
pyfai (3) Homepage: https://github.com/silx-kit/pyFAI Vcs Debian PaN Maintainers
1077400 pyfai: FTBFS: src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c:45695:17: error: assignment to ‘struct __pyx_obj_5pyFAI_3ext_12sparse_utils_Vector *’ from incompatible pointer type ‘PyObject *’ {aka ‘struct _object *’} [-Wincompatible-pointer-types] ftbfs, sid, trixie
1078268 pyfai: please make the package build reproducible
1085805 pyfai: Python SyntaxWarning
pyfftw (2) Homepage: https://github.com/pyFFTW/pyFFTW Vcs Debian Science Maintainers
917095 python3-pyfftw: alignment tests fail on several arches ftbfs
1071810 pyfftw: FTBFS: /tmp/pyfftw-l6u29tyw/fftw_plan_dft.c:2:17: error: implicit declaration of function ‘fftw_plan_dft’ ftbfs
python-fabio (1) Homepage: https://github.com/silx-kit/fabio Vcs Debian PaN Maintainers
920257 python3-fabio: program fails with Nexus data from Diamond Light Source
spglib (1) Homepage: https://spglib.github.io/spglib/ Vcs Debian Science Maintainers
1061357 python3-spglib: spglib python package not identified by dh_python3
ufo-filters (2) Homepage: http://ufo.kit.edu/ Vcs Debian Science Maintainers
884089 ufo-filters: Source includes "deps/oclfft" listed in Files-Excluded header
1048701 ufo-filters: Fails to build source after successful build ftbfs, sid, trixie

Open bugs in suggested packages

1 serious, 2 important, 3 normal, 5 wishlist
gsl-doc (5) Homepage: http://www.gnu.org/software/gsl Not maintained in Vcs Dirk Eddelbuettel
563225 gsl-doc-info: "info gsl" does not go to info pages
749076 What about changing gsl-doc-pdf to gsl-ref-pdf ?
767091 gsl-doc-info: documentation is free since 1.16
926568 gsl-doc: does this package need to be updated to match gsl 2.5?
941531 gsl-doc: build-depend on texlive-plain-generic, not obsolete texlive-generic-recommended bookworm, bullseye, patch, sid, trixie
gsl-ref-html (1) Homepage: Not maintained in Vcs Dirk Eddelbuettel
1007524 gsl-ref-html: please consider upgrading to 3.0 source format sid, trixie
gsl-ref-psdoc (1) Homepage: Not maintained in Vcs Dirk Eddelbuettel
1007359 gsl-ref-psdoc: please consider upgrading to 3.0 source format sid, trixie
h5py (3) Homepage: https://www.h5py.org/ Vcs Debian Science Maintainers
984638 could you backport h5py
1040107 h5py: deprecation of Python libraries asyncore and asynchat
1061063 armhf: h5py's tests expose unaligned memory accesses during the build patch, sid, trixie
python-threadpoolctl (1) Homepage: https://github.com/joblib/threadpoolctl Vcs Debian Science Maintainers
1001578 Missing egg-info folder

Done bugs

fftw3 (1) Homepage: https://fftw.org Vcs Debian Science Maintainers
1050691 fftw3: Please add loong64 architecture support to libfftw (libfftw3-long3).
gsl (1) Homepage: https://www.gnu.org/software/gsl Vcs Dirk Eddelbuettel
1086206 gsl: CVE-2024-50610 security, upstream
h5py (1) Homepage: https://www.h5py.org/ Vcs Debian Science Maintainers
1080198 h5py: autopkgtest regressions with mpich as default provider on 32 bit architectures
libsis-jhdf5-java (2) Homepage: https://sissource.ethz.ch/sispub/jhdf5 Vcs Debian Med Packaging Team
1078968 libsis-jhdf5-java: FTBFS against HDF5 1.14
1081977 libsis-jhdf5-java build-depends on dropped package.
mpich (1) Homepage: https://www.mpich.org/ Vcs Debian Science Maintainers
985394 mpich: broken symlinks: /usr/share/man/man1/{{mpirun,mpif90}.mpich,mpiexec.hydra}.1.gz -> {mpiexec,mpifort}.mpich.1.gz
openmpi (5) Homepage: https://www.open-mpi.org/ Vcs Debian Science Maintainers
1055425 openmpi: Fix hurd-amd64 build patch
1070985 openmpi: unowned file /usr/lib/*/libmpi_usempi_ignore_tkr-gfortranso.40 (-> no dot before 'so.40')
1078212 openmpi: FTBFS on 32bit archs (gcc-14?) patch
1085151 openmpi: FTBFS on arch:all: missing files, aborting ftbfs
1085258 openmpi-common: binary-all package hardcodes amd64 paths ftbfs
scalapack (1) Homepage: https://www.netlib.org/scalapack/ Vcs Debian Science Maintainers
1051986 scalapack: cmake files miss multiarch, referencing missing file
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Mon, 04 Nov 2024 16:44:00 -0000