Debian Science Project
Summary
Bugs of task nanoscale-physics-dev
Total bugs: 135
Open bugs: 122
Fixed bugs: 13
Links to other tasks
Tasks overview
Biology 13 (177)
Chemistry 90 (906)
Data acquisition 55 (232)
Data management 57 (453)
Devices 4 (24)
Economics 26 (136)
Engineering 73 (737)
Engineering-dev 73 (766)
Geography 93 (712)
Geometry 4 (21)
Linguistics 92 (419)
Logic 39 (258)
Machine learning 43 (412)
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Mathematics-dev 185 (1693)
Meteorology 102 (741)
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Nanoscale physics 332 (2605)
Physics 93 (902)
Physics-dev 34 (269)
Presentation 89 (726)
Psychophysics 11 (154)
Robotics 117 (492)
Robotics-dev 23 (219)
Simulations 52 (587)
Social 0 (0)
Statistics 51 (368)
Tools 13 (58)
Typesetting 298 (2000)
Viewing 319 (1912)
Viewing-dev 75 (762)
Workflow 25 (161)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 7 1
important 31 1
normal 48 3
minor 14 0
wishlist 12 5

Summary bugs page of task Nanoscale physics development

Immediately looking into bugs of the dependencies of this task is advised (1173)*

Open bugs in dependent packages

7 serious, 31 important, 48 normal, 14 minor, 12 wishlist
abinit (5) Homepage: http://www.abinit.org/ Vcs Debichem Team
988798 abinit-doc: broken symlink: /usr/share/doc/abinit/html/index.md -> guide/new_user.md
1015347 abinit: ftbfs with LTO (link time optimization) enabled trixie, sid
1073088 abinit: build-depends on markdown
1076027 abinit: FTBFS with mpich as default MPI implementation on 32 bit architectures: Error: Type mismatch in argument ‘block_displ’ at (1); passed INTEGER(8) to INTEGER(4) ftbfs
1089281 abinit: Supporting rootless builds ftbfs, sid, trixie
cbflib (2) Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Vcs Debian PaN Maintainers
1041395 libcbf1: Problem with data block name size
1096415 cbflib: ftbfs with GCC-15 forky, sid
cctbx (2) Homepage: https://github.com/cctbx/cctbx_project Vcs Debian Science Maintainers
1085414 cctbx: Python SyntaxWarning
1101031 cctbx: autopkgtest regression in testing
cod-tools (1) Homepage: https://wiki.crystallography.net/cod-tools Vcs Debian Science Maintainers
1102820 cod-tools: add perl-xs-dev to Build-Depends
debian-science (3) Homepage: https://wiki.debian.org/DebianScience/ Vcs Debian Science Team
1030327 science-numericalcomputation: please stop recommending python3-theano as it is being removed
1032638 please drop transitional package science-electronics from src:debian-science
1055339 debian-science: please replace recommendation of src:dolfin by src:fenics-dolfinx
etsf-io (2) Homepage: https://github.com/ElectronicStructureLibrary/libetsf_io Vcs Debian Science Maintainers
978503 etsf-io: uscan fails due to gone download page
1044263 etsf-io: Fails to build source after successful build ftbfs, sid, trixie
fftw3 (5) Homepage: https://fftw.org Vcs Debian Science Maintainers
942359 Please provide libfftw3-long3 on all platforms
948086 package fftw3 does not install cmake config files
1044274 fftw3: Fails to build source after successful build ftbfs, sid, trixie
1054906 fftw3: Please enable avx2 patch
1075985 libfftw3-mpi3 might be misbuilt with MPICH as default trixie, sid, ftbfs
gpyfft (1) Homepage: https://github.com/geggo/gpyfft Vcs Debian Science Maintainers
878349 gpyfft: FTBFS on non-Linux: CLFFT_INCL_DIRS is not defined upstream
gsl (12) Homepage: https://www.gnu.org/software/gsl Vcs Dirk Eddelbuettel
716005 [Mayhem] Bug report on gsl-bin: gsl-histogram crashes with exit status 139
815100 /usr/share/doc/libgsl2/copyright: Small mistakes in the copyright file
822332 libgsl2: typo in package description
862259 libgsl-dev is not Multi-Arch compatible
913539 typo in gsl-randist(1)
960185 libgsl-dev: fails to converge on beta inv for some values
960514 libgsl25: obsolete conflicts/replaces
960515 libgsl25: strict dependency on libgslcblas0 prevents co-installability of different libgslXX versions
987651 install the examples in libgsl-dev
1001589 libgsl25: Can't be upgraded to 2.7+dfsg-2
1044663 gsl: Fails to build source after successful build ftbfs, sid, trixie
1089509 Please reconsider building libgsl-prof by default
hdf5 (22) Homepage: http://hdfgroup.org/HDF5/ Vcs Gilles Filippini
638753 libhdf5-serial-1.8.7: threadsafe memory leaks moreinfo
716008 [Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139
716010 [Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139
716011 [Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139
716012 [Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139
839784 libhdf5-dev: pkg-config file references ONLY the C library
968559 libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing moreinfo
1023446 libhdf5-openmpi-dev: h5pcc configured as static build wontfix
1040862 hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin moreinfo
1052250 pkg-config file incorrect for static linking
1100440 hdf5: CVE-2025-2153 security, upstream
1103531 hdf5: CVE-2025-2926 security, upstream
1103532 hdf5: CVE-2025-2925 security, upstream
1103533 hdf5: CVE-2025-2924 security, upstream
1103534 hdf5: CVE-2025-2923 security, upstream
1103536 hdf5: CVE-2025-2915 security, upstream
1103537 hdf5: CVE-2025-2914 security, upstream
1103538 hdf5: CVE-2025-2913 security, upstream
1103539 hdf5: CVE-2025-2912 security, upstream
1103540 hdf5: CVE-2025-2310 security, upstream
1103541 hdf5: CVE-2025-2309 security, upstream
1103542 hdf5: CVE-2025-2308 security, upstream
hepmc3 (2) Homepage: http://hepmc.web.cern.ch/hepmc/ Vcs Debian Science Maintainers
1049185 hepmc3: Fails to build source after successful build ftbfs, sid, trixie
1064556 hepmc3: FTBFS on i386: 86% tests passed, 2 tests failed out of 14 trixie, experimental, ftbfs, sid
lapack (2) Homepage: https://www.netlib.org/lapack/ Vcs Debian Science Team
354463 Undefined symbols/changed size between lapack and blas
694625 libblas3gf: DGEMV does not handle properly N=0
libccp4 (2) Homepage: https://www.ccp4.ac.uk/ Vcs Debian Science Maintainers
1075155 libccp4: ftbfs with GCC-14 ftbfs, sid, trixie
1097169 libccp4: ftbfs with GCC-15 forky, sid
libxc (3) Homepage: https://libxc.gitlab.io/ Vcs Debichem Team
1035858 libxc9: broken symlink: /usr/share/doc/libxc9/README -> README.md
1047002 libxc: Fails to build source after successful build ftbfs, sid, trixie
1084870 libxc-dev: Missing Fortran Cmake Package config files
mpich (10) Homepage: https://www.mpich.org/ Vcs Debian Science Maintainers
31779 mpich: Clustering multiple CPU archs is not supported upstream
208431 mpich: 2>GB file handling on NFS
301551 mpirun is inconvenient on OpenMosix clusters
922848 mpich FTBFS with the Flang Fortran compiler
987716 mpich: Missing many manpages
1042412 libmpich-dev: parallel gfortran prog fails with error
1102612 mpich 4.3 not initialising multiple processes
1102920 mpich: Consider switching mips64el to ch3
1102928 mpich: mpi-c.pc no longer available, causing mpi-defaults autopkgtest regression
1103991 mpich: mpi-fort.pc no longer available, causing mpi-defaults autopkgtest regression
oce (1) Homepage: https://github.com/tpaviot/oce/wiki Vcs Debian Science Maintainers
1092130 oce: Upstream is discontinued, recommends OCCT as replacement
openmpi (28) Homepage: https://www.open-mpi.org/ Vcs Debian Science Maintainers
524553 openmpi-bin: mpiexec seems to be resolving names on server instead of each node upstream, confirmed
551708 openmpi-bin: Please add support to build with alternative compilers confirmed
576238 libopenmpi-dev: Cannot compile static application confirmed
584699 programs freeze on first MPI op. when run on multihomed IPv6 hosts upstream, confirmed, help
598553 Add support for blocking progress upstream, confirmed, help
732160 openmpi-common: Valgrind suppression file incomplete upstream, confirmed
782578 openmpi: Enable memchecker at least in a variant?
849974 openmpi: not enough slots available
851918 openmpi: MPI_Comm_dup error on s390x, ppc64, sparc64 builds of mpgrafic - maybe from openmpi
910251 libopenmpi3 3.1.2-5 Introduces 15s Delay and hfi_wait_for_device Messages
919335 mpifort (3.1.3-9) infinite loop on hurd reading from stdin
922849 openmpi FTBFS with the Flang Fortran compiler
930243 libopenmpi3: Illegal instruction on amd64 CPU without AVX support
945273 opempi warning on stderr causes autopkg test errors in dependent packages trixie, bullseye, sid, bookworm
954436 openmpi segfault on the stretch(oldstable) distrib
954997 mpirun: reading from stdin more than 64k cause crashes
961108 openmpi: providing 64-bit MPI
983600 libopenmpi-dev: Can not install with multi-arch
1032349 libopenmpi-dev: MPI_Win_create fails with MPI_ERR_WIN for v4.1.0 and ob1 newcomer
1045813 openmpi: Fails to build source after successful build ftbfs, sid, trixie
1049670 openmpi: Fails to build binary packages again after successful build ftbfs, sid, trixie
1057727 openmpi-bin is wrongly marked Multi-Arch: foreign
1086673 libopenmpi3t64: /usr/lib/x86_64-linux-gnu/libmpi_cxx.so.* is missing
1094805 openmpi: Consider re-enabling UCX in openmpi-mca-params.conf
1097520 openmpi: ftbfs with GCC-15 forky, sid
1100120 libopenmpi-dev: mpi4py spawn tests fail with MPI_ERR_UNKNOWN
1101519 openmpi: Spurious build-dep on libpsm-infinipath1-dev
1103984 obsolete conffile not removed: /etc/openmpi/openmpi-default-hostfile
pyfai (1) Homepage: https://github.com/silx-kit/pyFAI Vcs Debian PaN Maintainers
1078268 pyfai: please make the package build reproducible
pyfftw (1) Homepage: https://github.com/pyFFTW/pyFFTW Vcs Debian Science Maintainers
917095 python3-pyfftw: alignment tests fail on several arches ftbfs
python-fabio (1) Homepage: https://github.com/silx-kit/fabio Vcs Debian PaN Maintainers
920257 python3-fabio: program fails with Nexus data from Diamond Light Source
scalapack (2) Homepage: https://www.netlib.org/scalapack/ Vcs Debian Science Maintainers
1095323 scalapack: test results ignored during s390x build patch
1097848 scalapack: ftbfs with GCC-15 forky, sid
spglib (1) Homepage: https://spglib.github.io/spglib/ Vcs Debian Science Maintainers
1061357 python3-spglib: spglib python package not identified by dh_python3
ufo-filters (2) Homepage: http://ufo.kit.edu/ Vcs Debian PaN Maintainers
884089 ufo-filters: Source includes "deps/oclfft" listed in Files-Excluded header
1048701 ufo-filters: Fails to build source after successful build ftbfs, sid, trixie
vecgeom (1) Homepage: https://gitlab.cern.ch/VecGeom/VecGeom Vcs Debian Science Maintainers
1098061 vecgeom: ftbfs with GCC-15 forky, sid

Open bugs in suggested packages

1 serious, 1 important, 3 normal, 5 wishlist
gsl-doc (5) Homepage: http://www.gnu.org/software/gsl Not maintained in Vcs Dirk Eddelbuettel
563225 gsl-doc-info: "info gsl" does not go to info pages
749076 What about changing gsl-doc-pdf to gsl-ref-pdf ?
767091 gsl-doc-info: documentation is free since 1.16
926568 gsl-doc: does this package need to be updated to match gsl 2.5?
941531 gsl-doc: build-depend on texlive-plain-generic, not obsolete texlive-generic-recommended bullseye, trixie, sid, bookworm, patch
gsl-ref-html (1) Homepage: Not maintained in Vcs Dirk Eddelbuettel
1007524 gsl-ref-html: please consider upgrading to 3.0 source format trixie, sid
gsl-ref-psdoc (1) Homepage: Not maintained in Vcs Dirk Eddelbuettel
1007359 gsl-ref-psdoc: please consider upgrading to 3.0 source format sid, trixie
h5py (2) Homepage: https://www.h5py.org/ Vcs Debian Science Maintainers
984638 could you backport h5py
1040107 h5py: deprecation of Python libraries asyncore and asynchat
python-threadpoolctl (1) Homepage: https://github.com/joblib/threadpoolctl Vcs Debian Science Maintainers
1001578 Missing egg-info folder

Done bugs

etsf-io (1) Homepage: https://github.com/ElectronicStructureLibrary/libetsf_io Vcs Debian Science Maintainers
1050791 etsf-io: Drop unused libnetcdf-dev build dependency patch
hdf5 (1) Homepage: http://hdfgroup.org/HDF5/ Vcs Gilles Filippini
915807 hdf5: CVE-2017-17507 security, upstream
libsis-jhdf5-java (1) Homepage: https://sissource.ethz.ch/sispub/jhdf5 Vcs Debian Med Packaging Team
1081977 libsis-jhdf5-java build-depends on dropped package.
mpich (6) Homepage: https://www.mpich.org/ Vcs Debian Science Maintainers
985394 mpich: broken symlinks: /usr/share/man/man1/{{mpirun,mpif90}.mpich,mpiexec.hydra}.1.gz -> {mpiexec,mpifort}.mpich.1.gz
1089177 mpich: upload to unstable re-used version from experimental
1089694 mpich: autopkgtest regression
1101628 eztrace: FTBFS: 2: [OTF2] src/OTF2_Archive.c:2137: error: Parameter value out of range: Invalid archive handle! ftbfs, sid, trixie
1101686 mpich: triggers test errors: MPII_init_gpu(51)....: gpu_init failed
1103419 src:mpich: fails to migrate to testing for too long sid, trixie
pyfftw (1) Homepage: https://github.com/pyFFTW/pyFFTW Vcs Debian Science Maintainers
1102541 pyfftw: autopkgtest failure on !amd64 patch
scalapack (1) Homepage: https://www.netlib.org/scalapack/ Vcs Debian Science Maintainers
1051986 scalapack: cmake files miss multiarch, referencing missing file
spglib (2) Homepage: https://spglib.github.io/spglib/ Vcs Debian Science Maintainers
1102784 spglib: FTBFS: scikit_build_core._vendor.pyproject_metadata.errors.ConfigurationError: "project.license-files" must not be used when "project.license" is not a SPDX license expression ftbfs, sid, trixie
1103017 libspglib-f08-dev fails to coinstall
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Tue, 29 Apr 2025 04:53:01 -0000