Debian Science Project
Bugs of task nanoscale-physics
Total bugs: 324
Open bugs: 307
Fixed bugs: 17
Links to other tasks
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Viewing 295 (2077)
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critical 0 0
grave 0 0
serious 9 0
important 58 6
normal 133 27
minor 23 1
wishlist 45 5

Summary bugs page of task Nanoscale physics

Immediately looking into bugs of the dependencies of this task is advised (2518)*

Open bugs in dependent packages

9 serious, 58 important, 133 normal, 23 minor, 45 wishlist
988798 abinit-doc: broken symlink: /usr/share/doc/abinit/html/ -> guide/
1015347 abinit: ftbfs with LTO (link time optimization) enabled bookworm, sid
1016414 abinit: autopkgtest failure
1016598 binoculars: vtk[6,7] removal bookworm, sid
703684 cadabra: Please support left/right arrow keys in terminal upstream
845384 cadabra: Cadabra kernel keeps disconnecting unexpectedly. upstream
854987 cadabra: segmentation fault
922646 cadabra FTCBFS: wrong pkg-config/strip patch, upstream
967277 cadabra: depends on deprecated GTK 2
1000096 cadabra: depends on obsolete pcre3 library
948909 cp2k: test failure on armhf and i386 with libint2
974622 drawxtl: Please migrate to FLTK 1.3
984039 drawxtl: ftbfs with GCC-11 bookworm, ftbfs, sid
772361 quantum-espresso-data: bashism in /bin/sh script
818432 espresso: FTBFS on armel: hangs during the build ftbfs
861820 quantum-espresso-data: documentation is missing
978503 etsf-io: uscan fails due to gone download page
1016234 feynmf: FTBFS: ! LaTeX Error: File `hypdoc.sty' not found. bookworm, ftbfs, sid
616498 fityk: hangs / crashes with no explanation
622571 fityk: very high cpu usage while idle
680250 fityk: please add userdefined text as axis labels
787623 Regression: Wrong x-axis for import of SPECS .xy files
715937 [Mayhem] Bug report on garlic: garlic crashes with exit status 139
749656 garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour
967377 gdis: depends on deprecated GTK 2
ggobi (2) Homepage: Not maintained in Vcs Dirk Eddelbuettel
727611 ggobi needs porting from libgraph to libcgraph (graphviz-2.34) wontfix
967391 ggobi: depends on deprecated GTK 2
967392 ghemical: depends on deprecated GTK 2
967865 ghemical: depends on deprecated libglade2
996006 ghemical: Segmentation fault when starting
222883 gnuplot: load files and history upstream
227645 Document how to plot compressed file fixed-upstream, patch, upstream
248426 set terminal pdf doesn't work fixed-upstream
273002 Can not type non-ascii characters fixed-upstream, upstream
273245 gnuplot prevents additional axes in too many cases upstream
305501 gnuplot: home/end keys don't work
404270 gnuplot: license violation
445811 gnuplot: default y2axis labels have different offset than y1axis labels (postscript) upstream
479445 gnuplot: wrong line numbers for missing files reported during replot fixed-upstream, upstream
540406 the wxt driver deserves its own package patch
544666 completion works on filesystem object instead of gnuplot's commands upstream, wontfix
596870 gnuplot: Can not type non-ascii characters fixed-upstream, upstream
663211 gnuplot: Introduce arbitrary scaling for the (y) axis, broken bar charts
681646 gnuplot: somtimes forgets previous command (can't see it in history either)
705896 gnuplot-x11: gnuplot -persist core-dump without X11 DISPLAY moreinfo, unreproducible
711139 gnuplot-qt: the grid doesn't work with the 'qt' terminal in -persist state fixed-upstream
711141 gnuplot-qt: zooming doesn't work with the 'qt' terminal in -persist state fixed-upstream
711142 zooming in a gnuplot terminal yields blank contents when there should be a part of a segment fixed-upstream
720403 PDF and PS terminal output compress the second (and later) page(s) if text rotation is used
741074 gnuplot-nox: By default no plots (or error messages) are generated fixed-upstream
743014 unwanted space in gnuplot tab autocomplete
743247 gnuplot: Running load destroys arguments from call fixed-upstream, upstream
748400 gnuplot: Buffer overflow in epslatex terminal fixed-upstream, upstream
748966 Excess argument in call to function int_error fixed-upstream, upstream
750636 gnuplot doesn't work if $GNUTERM contains an unsupported terminal
755900 has multiple copies of some nodes!
755903 Have to invoke gnuplot with two copies of same input file
757906 Dependency solution problems currently with gnuplog
761470 gnuplot-qt: please provide a desktop file and icons
762006 gnuplot-x11: incorrect tic positions with y2tics
764751 gnuplot-tex: Post-install scripts should run texhash
770189 gnuplot-qt error
834396 gnuplot-x11: assertion failure rotating splot with mouse
837869 gnuplot: autoscale on y axis buggy with smooth kdensity
841137 gnuplot5-qt: double free or corruption
844484 gnuplot-qt: "Warning: slow font initialization" + graph not displayed in the window
847995 gnuplot: segfault on plot, with wxt, and "Warning: Mismatch between the program and library build versions"
859206 gnuplot: Recompile with more parallel axes
868594 gnuplot: Link against GNU readline to insert non-ascii interactively
880450 gnuplot: bad right margin when xtics label are rotated and aligned
880999 gnuplot: Segfault with false formatted command input
884538 gnuplot-qt: corrupted double-linked list
901614 gnuplot: clipped line segments disappear
905102 gnuplot-doc: gnuplot.pdf does not have images
909649 gnuplot: out of range data in tikz terminal when scaling y with two decimals fixed-upstream
914705 gnuplot: set title ... boxed is undocumented
914709 gnuplot: Mouse coordinates makes little sense in multiplot mode in wxt terminal
914713 gnuplot: set errorbars fullwidth breaks normal plots that use yerrorlines
942570 gnuplot: plot not updated with wxt/gtk3/gnome-shell/wayland
951406 gnuplot: "-" and two 'using' doesn't work in plot/splot
985248 gnuplot: format string bug in PS_load_fontfile()
989028 missing terminal types
991686 gnuplot: invalid utf8 input via terminal
1012523 gnuplot: Please review the build-dependencies
1016323 hyperref no longer working with the utf8x option of inputenc bookworm, ftbfs, sid
967449 gperiodic: depends on deprecated GTK 2
279358 grace: Grace uses a dash, not a minus sign for negative numbers.
396363 FTBFS: Makefile:69: *** target pattern contains no `%'. Stop.
477093 grace: please implement an "Index" option for annotated value type upstream, wontfix
568393 Grace is not compiled with PDF support wontfix
599791 Confirmation dialog hidden behind print setup dialog
653251 grace: 180.0000 != 180.00000 != 180.000000 in data
743359 convert to freetype support help, upstream
292385 Segmentation fault in search_component() from fixed-upstream
336770 graphviz: fdp should have a m-limit
360970 Please build the graphviz-java plugins and language module
360977 Please build the graphviz-sharp plugins and language module
383261 Segmentation fault in dot_concentrate() from fixed-upstream
388741 Font problem with Gdtclft (graphviz 2.8)
479674 graphviz-doc: Dot.ref.gz makes reference to ATT site - graphviz info moved to
514753 gv-ruby: Using engine nop globally sets -n, so neato is unusable afterwards
524408 graphviz: dot returns success even when interrupted
530310 graphviz: arrows get misdirected when nodes are one next to the other
539143 dotty.lefty: giving up on dot
540312 Dotty generated PS file are broken
557749 graphviz: different parallelograms have different angles
561212 graphviz: dotty crashes on attached file
574070 graphviz: Please add a 'dot -T help' option to cleanly list plugin renderer formats.
591089 graphviz: Bad arrow direction between same rank nodes fixed-upstream
594563 graphviz: core SVG output does not preserve alpha (transparency) color component
600710 graphviz: html table, fails on large COLSPAN values fixed-upstream
605993 corrupted PostScript output from neato
611129 graphviz: recommends ttf-liberation without explanation
617517 graphviz: Menus don't seem to work
620801 graphviz: Text on self-edges of a node is poorly placed
624355 [libgvc5-plugins-gtk] "gtk" lowercase in descriptions
626239 graphviz: fails to build with 'ld --no-copy-dt-needed-entries'
642643 graphviz-doc: Link to apparently defunct documentation
643332 [graphviz] tred removes empty labels
652952 gvpr: delete() causes processing to stop
674150 libgvc5 install fails unreproducible
688445 Can't select a font with Graphviz
697701 graphviz: dot: assertion failure in dot_position
698066 graphviz: dot crashes with *** glibc detected *** dot: malloc(): memory corruption: 0x097ca580 ***
700813 dot abort()s on valid input where neato, fdp, circo, twopi don't
712218 graphviz: gc - Please add -h option
724676 graphviz: build with parallel/concurrency (buildopts -j) fails
738470 graphviz: Patch to bootstrap without Gtk+, PHP, Ruby 1.8 patch
738847 graphviz: please include a binary to view dotfiles directly upstream
755124 Package size exploded patch
755127 unnecessary conflict with libgcv5
755525 graphviz: Upgrade pulls in unnecessary junk
779596 graphviz: style parameter sometimes causes edge to disappear upstream
815367 graphviz-doc: suggest doted in /usr/bin
820681 graphviz: please consider build-depend tightened on d-shlibs and drop local overrides
840105 graphviz: FTBFS on kfreebsd: conflicting declaration of strcasecmp()
841441 graphviz: Dies dumping memory map when specifying nodesep or minlen
845492 graphviz: Double free() for dot files with multiple digraphs
853468 graphviz: sfdp, gvmap are unusable without support for triangulation
870163 graphviz: VCS out of date
880112 graphviz: Nodes of SVG images do not get inserted if output is SVG
894589 graphviz: Segmentation fault in feasible_tree() at at ns.c:516 in
922201 libgraphviz-dev: dependencies pull in an almost complete desktop installation
925284 graphviz: CVE-2019-9904 fixed-upstream, security, upstream
926724 graphviz: CVE-2019-11023 fixed-upstream, security, upstream
944297 htmltable.c:1761: pos_html_tbl: assertion delx >= 0, when using nested fixedsize table
962021 graphviz: Embeds different date based on timezone fixed-upstream, patch
967456 graphviz: depends on deprecated GTK 2
980900 debian/watch doesn't find upstream releases patch
983886 libgvc6: fails foreign package installation patch
998256 graphviz: helping upgrade to 2.49.3
1012864 graphviz: new upstream version 2.44.0 is available
716005 [Mayhem] Bug report on gsl-bin: gsl-histogram crashes with exit status 139
815100 /usr/share/doc/libgsl2/copyright: Small mistakes in the copyright file
822332 libgsl2: typo in package description
862259 libgsl-dev is not Multi-Arch compatible
913539 typo in gsl-randist(1)
960185 libgsl-dev: fails to converge on beta inv for some values
960514 libgsl25: obsolete conflicts/replaces
960515 libgsl25: strict dependency on libgslcblas0 prevents co-installability of different libgslXX versions
987651 install the examples in libgsl-dev
1001589 libgsl25: Can't be upgraded to 2.7+dfsg-2
967514 gwyddion: depends on deprecated GTK 2
354463 Undefined symbols/changed size between lapack and blas
694625 libblas3gf: DGEMV does not handle properly N=0
1004218 /usr/lib/cmake/mathgl2/MathGLTargets.cmake: mgltask is missing when using cmake find_package(MathGL2)
1004219 /usr/lib/cmake/mathgl2/MathGL2Config.cmake: missing more dependencies: libhdf4-dev libmfhdf-dev libhdf5-dev libhpdf-dev libgif-dev
1006682 /usr/lib/cmake/mathgl2/MathGL2Config.cmake: Could NOT find OpenMP_CXX
487864 mayavi2: please implement a way to save PLOT3DReader properties default values
488429 mayavi2: please implement a global data range switch
488496 mayavi2: streamlines don't cross boundaries
488569 mayavi2: please implement a SelectMultiOutput filter
525575 mayavi2: ExtractGrid filter causes errors (traceback, ...)
533109 mayavi2: fails to restore grid limits of CustomGridPlane modules from visualization (*.mv2) files
534764 mayavi2: GLXBadContext when creating new scene
671343 mayavi2: FTBFS if built twice in a row: unrepresentable changes to source
999829 mayavi2: Mayavi 4.7.1-2+b2 do not start in GNU/Debian Bullseye with apt installation upstream
1016599 mayavi2: vtk[6,7] removal bookworm, sid
31779 mpich: Clustering multiple CPU archs is not supported
208431 mpich: 2>GB file handling on NFS
215528 mpich: mpirun fails with rsh-redone-client
301551 mpirun is inconvenient on OpenMosix clusters
446883 Compatibility with SLURM
498213 libmpich1.0gf: SIGSEV in MPI_Bcast when the size of the array is>40000
512142 [mpich-bin] tstmachines doesn't handle spaces in path patch
530144 mpich-bin: bashism in /bin/sh script
530145 mpich-mpd-bin: bashism in /bin/sh script
530146 mpich-shmem-bin: bashism in /bin/sh script
561967 Missing header file path in using gfortran
573449 mpich-mpd-bin: /usr/bin/tstmachines.mpich-mpd is a dangling
576276 mpich-bin: No way to force using ssh instead of rsh patch
581172 mpich-shmem-bin: Missing dependency on gawk (for cleanipcs script)
624349 libmpich2-dev: Activates debugging compiler option -g
666071 mpich2: In this version of mpich2, the mpd daemon (and other utilities) are missing.
715286 mpich: maintainer scripts assume #DEBHELPER# only sometimes does something
791676 libmpich-dev: mpicc adds compiler specific flags and fails for older gcc versions
912901 mpich: FTBFS on hppa - testsuite timeout
922848 mpich FTBFS with the Flang Fortran compiler
980943 mpich: mpirun segfaults on s390x
987716 mpich: Missing many manpages
193616 mpqc has many missing libs in the linkages upstream
725486 mpqc: Aborts with SIGABRT if executed without further arguments
903733 mpqc: Unescaped left brace in regex is deprecated
984244 mpqc: ftbfs with GCC-11 bookworm, ftbfs, sid
543162 [ncview] segfault when clicking on "Axes" button confirmed, upstream
565216 octave: add support for loading HDF5 created outside Octave upstream, wontfix
598059 octave3.2: axis equal/square incorrect for gnuplot 4.4 upstream, wontfix
675509 octave: FLTK graphics backend not compatible with --no-line-editing option upstream, wontfix
741097 octave: nox package of Octave
783624 octave: Bad plotted data against time with long arrays confirmed, upstream
913638 Please, Depends: info-browser | info wontfix
921207 octave: gives wrong results when used with MKL
933300 liboctave-dev should not depend on a toolchain wontfix
954858 octave: GL warning 1.3 not suported
978029 octave: unable to load appropriate font
998842 octave: inv() causes segfault if io package pre-loaded
1000011 octave: depends on obsolete pcre3 library upstream
1000028 octave: depends on obsolete pcre3 library upstream
524553 openmpi-bin: mpiexec seems to be resolving names on server instead of each node confirmed, upstream
551708 openmpi-bin: Please add support to build with alternative compilers confirmed
576238 libopenmpi-dev: Cannot compile static application confirmed
584699 programs freeze on first MPI op. when run on multihomed IPv6 hosts confirmed, help, upstream
598553 Add support for blocking progress confirmed, help, upstream
732160 openmpi-common: Valgrind suppression file incomplete confirmed, upstream
782578 openmpi: Enable memchecker at least in a variant?
849974 openmpi: not enough slots available
851918 openmpi: MPI_Comm_dup error on s390x, ppc64, sparc64 builds of mpgrafic - maybe from openmpi
910251 libopenmpi3 3.1.2-5 Introduces 15s Delay and hfi_wait_for_device Messages
919335 mpifort (3.1.3-9) infinite loop on hurd reading from stdin
922849 openmpi FTBFS with the Flang Fortran compiler
930243 libopenmpi3: Illegal instruction on amd64 CPU without AVX support
945273 opempi warning on stderr causes autopkg test errors in dependent packages bookworm, bullseye, sid
954436 openmpi segfault on the stretch(oldstable) distrib
954997 mpirun: reading from stdin more than 64k cause crashes
961108 openmpi: providing 64-bit MPI
983600 libopenmpi-dev: Can not install with multi-arch
1009748 dropped, broken symlink
922907 Updating the openmx Uploaders list
957639 openmx: ftbfs with GCC-10 bookworm, bullseye, ftbfs, sid
641474 psi3 fails using basis sets cc-pVNZ with N > 5 confirmed, moreinfo, wontfix
715813 [Mayhem] Bug report on psi3: detcasman crashes with exit status 139
716153 [Mayhem] Bug report on psi3: psiclean crashes with exit status 139
716216 [Mayhem] Bug report on psi3: nonbonded crashes with exit status 139
716393 [Mayhem] Bug report on psi3: tocprint crashes with exit status 139
716535 [Mayhem] Bug report on psi3: oeprop crashes with exit status 139
979552 python-ase: parts of the documentation fails to build
999747 sasview: broken Help links to documentation
1001101 sasview: docs FTBFS sphinx/dbus error in chroot
681188 scilab: Issue with locales values and import/export text files l10n
712781 src:scilab: please use SLICOT Debian package instead of embedded copy help
747211 scilab: Allow scilab gui to start without opengl
896119 scilab: ATOMS system is broken in Scilab 6 on buster
903209 scilab: ATOMS system is broken in Scilab 6 on buster
959732 scilab: Scilab graphic window is empty when plotting
970490 scilab-cli: Incorrect version being displayed
982041 scilab: reduce Build-Depends
984799 scilab-full-bin for armhf and i386
988426 scilab,scilab-cli,scilab-test: metapackages uninstallable on 32-bit architectures
988527 scilab: unbound variable in /usr/share/bash-completion/completions/scilab
989364 scilab: Multiple security issues in ezxml security
990155 scilab-cli: legacy conffiles leftover
999966 scilab: depends on obsolete pcre3 library
1012099 scilab: FTBFS with OpenJDK 17: no scilocalization in java.library.path bookworm, ftbfs, sid
1014391 scilab: CVE-2022-30045 incorrect memory handling in ezml support leading to a heap out-of-bounds read security
824073 python-sympy: please package the galgebra module (as a separate binary package) wontfix
826457 python-sympy: please implement a way to force a derivative to be partial or total upstream
1013405 sympy: FTBFS with Sphinx 5.0, docutils 0.18: AttributeError: 'Text' object has no attribute 'rawsource' ftbfs
1008749 v-sim: FTBFS with Python 3.10 due to faulty configure parsing ftbfs, patch, sid

Open bugs in suggested packages

6 important, 27 normal, 1 minor, 5 wishlist
axiom (8) Homepage: Not maintained in Vcs Camm Maguire
231800 axiom: )edit command broken
349877 axiom: internal error while executing user function
407109 axiom: loops forever while )read'ing expression
716026 [Mayhem] Bug report on axiom-hypertex: htadd crashes with exit status 139
716335 [Mayhem] Bug report on axiom: sman crashes with exit status 139
716442 [Mayhem] Bug report on axiom-graphics: view2d crashes with exit status 139
827955 axiom: Uses too much memory to build
976754 axiom: missing homepage + new version
222703 dx: cannot load data: socket bufsize mismatch
246320 dx: "Edit Visual Programs" fails moreinfo
319769 [Fwd: Log for failed build of dx_1:4.3.2-4 (dist=unstable)]
327563 dx: scripting incompatible with SMP dx... moreinfo, unreproducible
409906 dx: using remote executive and display/image module causes exec to sigsegv
748027 Conflicting parameter types of function _dxfCompositeField_BoundingBox
173709 dxsamples: some samples crashes
638753 libhdf5-serial-1.8.7: threadsafe memory leaks moreinfo
715959 [Mayhem] Bug report on hdf5-tools: gif2h5 crashes with exit status 139
716008 [Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139
716010 [Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139
716011 [Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139
716012 [Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139
740613 libhdf5-7: Please include support for compression with libaec
748587 Duplicate and conflicting definitions of variable FILENAME upstream
839784 libhdf5-dev: pkg-config file references ONLY the C library
915807 hdf5: CVE-2017-17507 security, upstream
958174 hdf5: please add the hdf5plugins
968559 libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing moreinfo
602849 Various patches adding back functionality which is in graphviz wontfix
maxima (10) Homepage: Not maintained in Vcs Camm Maguire
431866 maxima: solve function cause infinite loop and infinite memory allocation
597531 maxima: fails to solve a simple 4th order equation upstream
597534 maxima: cannot solve the following integral upstream
779804 Please provide the ecl version of maxima patch
867999 maxima: does not reproducibly build
905316 maxima: printf hangs with format string, works in lisp mode
965154 maxima: insecure use of /tmp security, upstream
971905 maxima-src: please choose a mailing list provider where subscription is possible without loading nonfree javascript upstream
1009332 maxima-emacs: Imaxima fails to render latex unreproducible
1013232 maxima: Incorrect remainder evaluation with unbound variables upstream
949462 python-pygraphviz: please reduce build dependencies patch

Done bugs

1011982 science-config: configuration file "90science-config" is missing semi-colon. Causes "unable to parse the config file" errors
972537 please add --enable-ros3-vfd to the build options to allow RO access to HDF5 on S3
maxima (1) Homepage: Not maintained in Vcs Camm Maguire
979102 Legally problematic GPL-3+ readline dependency
935285 mayavi2: FTBFS on arm64, ppc64el bullseye, buster, ftbfs, sid
997856 mayavi2 crashes at startup with SplashScreen error
985394 mpich: broken symlinks: /usr/share/man/man1/{{mpirun,mpif90}.mpich,mpiexec.hydra}.1.gz -> {mpiexec,mpifort}.mpich.1.gz
1016401 switch build depends on libnetpbm10-dev to libnetpbm-dev bookworm, sid
1016271 octave: FTBFS: liboctave/numeric/ error: ‘clock’ was not declared in this scope bookworm, ftbfs, sid
979041 libopempi3: aborts python code due to libfabric fork() issues
1013085 python-ase: scipy.constants.codata._physical_constants_xxxx no longer in scipy-1.8.0 bookworm, ftbfs, patch, sid, upstream
1013537 python-ase: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.9 3.10" returned exit code 13 bookworm, ftbfs, patch, sid, upstream
1013714 python-ase: FTBFS: pytest7 regression, deprecated pytest feature: pytest.warnsNone bookworm, ftbfs, sid
991753 python3-scipy: build with pythran support
1003417 scipy: build ignores test failures
1003880 libblis3-openmp: i386 triggers segfault in scipy arpack test (test_hermitian_modes)
1007769 scipy: FTBFS on sh4 ftbfs
1015745 python3-scipy: version 1.8.1-7 is breaking spyder autopkgtests
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
Last update: Mon, 08 Aug 2022 15:57:58 -0000